mRNA_H-elongata_contig60154.13550.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60154.13550.1
Unique NamemRNA_H-elongata_contig60154.13550.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig60154.13550.1 vs. uniprot
Match: A0A6H5K0L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L2_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 2.520e-29
Identity = 58/76 (76.32%), Postives = 64/76 (84.21%), Query Frame = 1
Query:    4 TSSGTQVAVFRVADMTDPKRRFKVDVNARQRDLTGGV-----SAHSGLNMVLVEGGPKAVRAYVKLMTRRIRWGEE 216
            TS   QVAV+RVADM+DPKRRFKVDVNA+QR LTGGV      A+ G+NMV+VEGGPKAVRAY KLMTRRIRWGEE
Sbjct:  102 TSKELQVAVYRVADMSDPKRRFKVDVNAQQRYLTGGVVMCTDEANPGMNMVVVEGGPKAVRAYTKLMTRRIRWGEE 177          
BLAST of mRNA_H-elongata_contig60154.13550.1 vs. uniprot
Match: A0A507E7R3_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507E7R3_9FUNG)

HSP 1 Score: 88.2 bits (217), Expect = 9.450e-19
Identity = 39/71 (54.93%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    4 TSSGTQVAVFRVADMTDPKRRFKVDVNARQRDLTGGVSAHSGLNMVLVEGGPKAVRAYVKLMTRRIRWGEE 216
            TS+  QVAVFR+ D+T P+ ++KVD+NA+Q +LTG    +SG+NMV+VEGGPK ++AY KLM +RI W  +
Sbjct:  410 TSNLVQVAVFRINDLTHPQHKYKVDINAQQLNLTGVAILYSGMNMVIVEGGPKGIKAYKKLMLKRIDWSNQ 480          
BLAST of mRNA_H-elongata_contig60154.13550.1 vs. uniprot
Match: A0A0L0H6B2_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H6B2_SPIPD)

HSP 1 Score: 87.4 bits (215), Expect = 1.770e-18
Identity = 40/71 (56.34%), Postives = 55/71 (77.46%), Query Frame = 1
Query:    4 TSSGTQVAVFRVADMTDPKRRFKVDVNARQRDLTGGVSAHSGLNMVLVEGGPKAVRAYVKLMTRRIRWGEE 216
            TS+  +VAVFR+ D++ P+ +FKVD+NA+Q +LTG    +SGLN+V+VEGGPK ++AY KLM RRI W  E
Sbjct:  417 TSNLVEVAVFRINDLSHPQHKFKVDMNAQQHNLTGVAILYSGLNVVIVEGGPKGIKAYKKLMLRRIDWTNE 487          
BLAST of mRNA_H-elongata_contig60154.13550.1 vs. uniprot
Match: S4RLS4_PETMA (PRP3 pre-mRNA processing factor 3 homolog (yeast) n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RLS4_PETMA)

HSP 1 Score: 83.2 bits (204), Expect = 4.920e-17
Identity = 34/71 (47.89%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    4 TSSGTQVAVFRVADMTDPKRRFKVDVNARQRDLTGGVSAHSGLNMVLVEGGPKAVRAYVKLMTRRIRWGEE 216
            T+SG  ++V+R+ D+T+P ++FK++ NA Q  LTGGV  H  +N+V+VEGGPK+ + + +LM  RI+W EE
Sbjct:  306 TTSGVHISVYRIRDLTNPSKKFKIETNANQLFLTGGVVLHKDVNVVVVEGGPKSQKKFRRLMMNRIKWAEE 376          
BLAST of mRNA_H-elongata_contig60154.13550.1 vs. uniprot
Match: A0A7R8ZL82_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8ZL82_9CRUS)

HSP 1 Score: 79.7 bits (195), Expect = 5.830e-17
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = 1
Query:    4 TSSGTQVAVFRVADMTDPKRRFKVDVNARQRDLTGGVSAHSGLNMVLVEGGPKAVRAYVKLMTRRIRW 207
            TSSG  V+V+RV D+T+P ++FKV+ NA+Q  +TG V  H  LN+V+VEGGPK  + Y  LM RRI+W
Sbjct:   48 TSSGVNVSVYRVRDLTNPAQKFKVETNAKQLVMTGCVVLHGDLNLVVVEGGPKQQKKYRILMMRRIKW 115          
BLAST of mRNA_H-elongata_contig60154.13550.1 vs. uniprot
Match: A7SAL9_NEMVE (U4/U6 small nuclear ribonucleoprotein Prp3 n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7SAL9_NEMVE)

HSP 1 Score: 82.8 bits (203), Expect = 7.620e-17
Identity = 39/71 (54.93%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    4 TSSGTQVAVFRVADMTDPKRRFKVDVNARQRDLTGGVSAHSGLNMVLVEGGPKAVRAYVKLMTRRIRWGEE 216
            TS G  VAVFRV D+ DP+R++KVD+NA+Q  LTG V     + +V+VEGGPKAV+ + +LM  RI+W EE
Sbjct:  535 TSLGVHVAVFRVDDLHDPQRKYKVDINAQQLYLTGCVMVFKEMYLVVVEGGPKAVKKFKRLMLHRIKWAEE 605          
BLAST of mRNA_H-elongata_contig60154.13550.1 vs. uniprot
Match: UPI000A2A93AE (U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A93AE)

HSP 1 Score: 82.4 bits (202), Expect = 1.040e-16
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    4 TSSGTQVAVFRVADMTDPKRRFKVDVNARQRDLTGGVSAHSGLNMVLVEGGPKAVRAYVKLMTRRIRWGE 213
            TS G  VAVFR+ D+ DP++++KVD+NA+Q  LTG V  +  LN+ +VEGGPKA++ Y +LM  RI+W E
Sbjct:  539 TSLGVHVAVFRIDDLHDPQKKYKVDINAQQYYLTGCVVIYKELNLAIVEGGPKAIKKYKQLMLHRIKWTE 608          
BLAST of mRNA_H-elongata_contig60154.13550.1 vs. uniprot
Match: A0A024G3P8_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G3P8_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.440e-16
Identity = 40/66 (60.61%), Postives = 51/66 (77.27%), Query Frame = 1
Query:   22 VAVFRVADMTDPKRRFKVDVNARQRDLTGGV--SAHSGLNMVLVEGGPKAVRAYVKLMTRRIRWGE 213
            VA+FRV D+++P+ RFKVDVNA+Q  LTGGV       +N+V+VEGG KAVR Y +LMTRRIRW +
Sbjct: 1283 VALFRVPDLSNPQHRFKVDVNAQQYHLTGGVVLCKEDDINVVIVEGGKKAVRHYTRLMTRRIRWND 1348          
BLAST of mRNA_H-elongata_contig60154.13550.1 vs. uniprot
Match: F0W5Y1_9STRA (U4/U6 small nuclear ribonucleoprotein Prp3 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W5Y1_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.640e-16
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = 1
Query:   22 VAVFRVADMTDPKRRFKVDVNARQRDLTGGV--SAHSGLNMVLVEGGPKAVRAYVKLMTRRIRWGE 213
            VA+FRV D+++P+ RFKVDVNA+Q  LTGGV       +N+V+VEGG KAVR Y  LMTRRIRW +
Sbjct:  463 VALFRVPDLSNPQHRFKVDVNAQQSHLTGGVLLCKEDDINVVIVEGGKKAVRHYTHLMTRRIRWND 528          
BLAST of mRNA_H-elongata_contig60154.13550.1 vs. uniprot
Match: A0A077Z9Z8_TRITR (U4:U6 small nuclear ribonucleoprotein Prp3 n=2 Tax=Trichuris TaxID=36086 RepID=A0A077Z9Z8_TRITR)

HSP 1 Score: 81.3 bits (199), Expect = 2.640e-16
Identity = 35/65 (53.85%), Postives = 50/65 (76.92%), Query Frame = 1
Query:   13 GTQVAVFRVADMTDPKRRFKVDVNARQRDLTGGVSAHSGLNMVLVEGGPKAVRAYVKLMTRRIRW 207
            GT VAVFRV D+TDP ++FK+++NA+Q ++ G V  H  +N+V+VEGGPK +R + +LM  RIRW
Sbjct:  470 GTHVAVFRVLDLTDPTKKFKIEMNAKQLNIHGIVVLHKDINIVVVEGGPKQIRFFKRLMMHRIRW 534          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60154.13550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K0L2_9PHAE2.520e-2976.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A507E7R3_9FUNG9.450e-1954.93Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A0L0H6B2_SPIPD1.770e-1856.34Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
S4RLS4_PETMA4.920e-1747.89PRP3 pre-mRNA processing factor 3 homolog (yeast) ... [more]
A0A7R8ZL82_9CRUS5.830e-1754.41Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
A7SAL9_NEMVE7.620e-1754.93U4/U6 small nuclear ribonucleoprotein Prp3 n=2 Tax... [more]
UPI000A2A93AE1.040e-1652.86U4/U6 small nuclear ribonucleoprotein Prp3 isoform... [more]
A0A024G3P8_9STRA1.440e-1660.61Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
F0W5Y1_9STRA2.640e-1660.61U4/U6 small nuclear ribonucleoprotein Prp3 putativ... [more]
A0A077Z9Z8_TRITR2.640e-1653.85U4:U6 small nuclear ribonucleoprotein Prp3 n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60154contigH-elongata_contig60154:1568..2237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score86.7
Seed ortholog evalue5e-15
Seed eggNOG ortholog109760.SPPG_08410T0
Preferred namePRP3
KEGG koko:K12843
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0030532,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0071704,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1990904
EggNOG free text desc.u4 u6 small nuclear ribonucleoprotein
EggNOG OGs38CXJ@33154,3NW0X@4751,KOG2769@1,KOG2769@2759
COG Functional cat.A
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size216
Cds size216
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930975.123683-CDS-H-elongata_contig60154:1567..16691622930975.123683-CDS-H-elongata_contig60154:1567..1669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60154 1568..1669 -
1691679647.4266367-CDS-H-elongata_contig60154:1567..16691691679647.4266367-CDS-H-elongata_contig60154:1567..1669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60154 1568..1669 -
1622930975.1404498-CDS-H-elongata_contig60154:2123..22371622930975.1404498-CDS-H-elongata_contig60154:2123..2237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60154 2124..2237 -
1691679647.4414318-CDS-H-elongata_contig60154:2123..22371691679647.4414318-CDS-H-elongata_contig60154:2123..2237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60154 2124..2237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60154.13550.1prot_H-elongata_contig60154.13550.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60154 1568..2237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60154.13550.1

>prot_H-elongata_contig60154.13550.1 ID=prot_H-elongata_contig60154.13550.1|Name=mRNA_H-elongata_contig60154.13550.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
MTSSGTQVAVFRVADMTDPKRRFKVDVNARQRDLTGGVSAHSGLNMVLVE
GGPKAVRAYVKLMTRRIRWGEE
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mRNA from alignment at H-elongata_contig60154:1568..2237-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60154.13550.1 ID=mRNA_H-elongata_contig60154.13550.1|Name=mRNA_H-elongata_contig60154.13550.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=670bp|location=Sequence derived from alignment at H-elongata_contig60154:1568..2237- (Himanthalia elongata Himel1 dioecious)
ATGACGTCATCGGGAACGCAGGTGGCGGTTTTCCGCGTGGCAGACATGAC AGACCCCAAGCGGCGCTTCAAGGTGGACGTTAACGCGAGGCAGAGAGATC TCACGGGGGGAGTGGTATCGTGCACGTAAGATCCACCGCCTTGCGGTCTT TTGATCAATAGACGCTATTTCGTTGTACGACGTTTGAATCGACGATAAAC TTTGAAAAGACCGATTGCAATCGATCGAGGGAGATAGGGAGGGAGGCAGA AGTGGCGGCGGCAACATGTTTTAGTTGGAATAGACGCGCATATAGCTGAC AATTTTTAGGGGCCCAGCGCAAGAGAAACGATACGCACACGAGTCTATCT CGAGGAAGAGGCTTGACCGTCCATTTCTCGCTCGGCCCGCTTTGGTGCGT GGGTTGTTTTTGCTTGTTTACATGGCTTATTAAGCCCCCATTGTTAGGGG TTCGGGTCTACACGATTGCGGAAAGTCTTGCCAGGGGGGCAAGAATTAAA AAAAAAACTCCTTCCACGATTTATCTACACGTATTGCCCCCGTTGCCTCT CGTTACCGTGACAGGGAGAGCGCCCACTCCGGGCTAAATATGGTGTTGGT TGAGGGGGGCCCCAAGGCCGTGCGGGCGTACGTAAAGCTCATGACACGTC GCATACGCTGGGGGGAAGAA
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Coding sequence (CDS) from alignment at H-elongata_contig60154:1568..2237-

>mRNA_H-elongata_contig60154.13550.1 ID=mRNA_H-elongata_contig60154.13550.1|Name=mRNA_H-elongata_contig60154.13550.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig60154:1568..2237- (Himanthalia elongata Himel1 dioecious)
ATGACGTCATCGGGAACGCAGGTGGCGGTTTTCCGCGTGGCAGACATGAC
AGACCCCAAGCGGCGCTTCAAGGTGGACGTTAACGCGAGGCAGAGAGATC
TCACGGGGGGAGTGATGACGTCATCGGGAACGCAGGTGGCGGTTTTCCGC
GTGGCAGACATGACAGACCCCAAGCGGCGCTTCAAGGTGGACGTTAACGC
GAGGCAGAGAGATCTCACGGGGGGAGTGAGCGCCCACTCCGGGCTAAATA
TGGTGTTGGTTGAGGGGGGCCCCAAGGCCGTGCGGGCGTACGTAAAGCTC
ATGACACGTCGCATACGCTGGGGGGAAGAAAGCGCCCACTCCGGGCTAAA
TATGGTGTTGGTTGAGGGGGGCCCCAAGGCCGTGCGGGCGTACGTAAAGC
TCATGACACGTCGCATACGCTGGGGGGAAGAA
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