prot_H-elongata_contig60128.13547.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig60128.13547.1
Unique Nameprot_H-elongata_contig60128.13547.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length320
Homology
BLAST of mRNA_H-elongata_contig60128.13547.1 vs. uniprot
Match: D8LSX4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSX4_ECTSI)

HSP 1 Score: 281 bits (718), Expect = 9.270e-86
Identity = 176/360 (48.89%), Postives = 211/360 (58.61%), Query Frame = 0
Query:    1 MIVREEMARSAGGGEKGMGRGIAASVRETLACGDSRDGAGEQTEENRQRLLESVDALVVARGSGRRFDDDDSFLELWNEAREAAASF--------SVPPLETDGDVAQTRPP--------------------------------------PLARHLGFGGHGPRVAEKLSMLMGTRALAAERTQPYPRGDKNSTAPTETLEIVPPALFFGDLRAGDGAATAKTIELCRDRGVQAFSTRYLGGQGGEEAWRGAAAAADYEHEDVTADEVLAKWVLELGSGVIWRPSEVAEVARTLPLARFFLPVEWMTEIVYRGGCSPLEWATTLSRLLPPGGTPTEEELEKEVDEMIERLMTEDPEDGTE 314
            MIV E  +  AGG      RGIAA+V ETLA G   DG G +T+    RLL+SVDALV+AR SG  FDDD  FLE+W+EA +AAAS         +VP  +T  D      P                                          HLG GGHG +VA++L++L+     A       P      T P +      P+L+FGDLRAGDGAAT  TIELCR+RGVQAFS    GG+G EEA +GAAAAADYEHEDVT DEVLAKWV+E+  GV+WRP EV EVAR LPLAR++LP EW++EI  RGGC P  WA TLSRL P  GTP+EE+L  EV+E +  LMT  P+DG E
Sbjct:  339 MIVGESNSAVAGG------RGIAAAVSETLASGRVDDG-GIETDGTATRLLDSVDALVLARESGEYFDDDRLFLEMWDEAHQAAASPPRESTGLPAVPTEQTGLDTPADDDPFGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLGVGGHGSKVADRLALLVDQSPAAGAAAADVP-----GTVPRKL-----PSLYFGDLRAGDGAATTATIELCRERGVQAFSLECAGGRGAEEARKGAAAAADYEHEDVTDDEVLAKWVMEIDGGVVWRPREVKEVARVLPLARYYLPPEWISEIADRGGCPPEAWARTLSRLCPSEGTPSEEQLGAEVEETVAGLMT--PDDGEE 679          
BLAST of mRNA_H-elongata_contig60128.13547.1 vs. uniprot
Match: A0A6H5L373_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L373_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.180e-29
Identity = 78/166 (46.99%), Postives = 97/166 (58.43%), Query Frame = 0
Query:   53 SVDALVVARGSGRRFDDDDSFLELWNEAREAAASFSVPPLETDGDVAQTRPPPLARHLGFGGHGPRVAEKLSMLMGTRALAAERTQPYPRGDKNSTAPTETLEIVPPALFFGDLRAGDGAATAKTIELCRDRGVQAFSTRYLGGQGGEEAWRGAAAAADYEHEDVT 218
            S D  VV  G GR FD     L   + A E++         ++ D   +R   L  HLG GGHGP+VA++L++L+     A          D   T P +      P+L+FGDLRAGDGAAT  TIELCR+RGVQAFS  Y GG+G EEA +GAAAAADYEHEDV+
Sbjct:   69 SDDNSVV--GEGRPFDFPADSLTADSPAAESSXXXXXXXXGSN-DELDSR---LGSHLGVGGHGPKVADRLALLVDQSPAAGSAA------DVPGTVPRKL-----PSLYFGDLRAGDGAATTATIELCRERGVQAFSLEYAGGRGAEEAGKGAAAAADYEHEDVS 217          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60128.13547.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSX4_ECTSI9.270e-8648.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L373_9PHAE1.180e-2946.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60128contigH-elongata_contig60128:1648..3538 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60128.13547.1mRNA_H-elongata_contig60128.13547.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig60128 1648..3565 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig60128.13547.1 ID=prot_H-elongata_contig60128.13547.1|Name=mRNA_H-elongata_contig60128.13547.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=320bp
MIVREEMARSAGGGEKGMGRGIAASVRETLACGDSRDGAGEQTEENRQRL
LESVDALVVARGSGRRFDDDDSFLELWNEAREAAASFSVPPLETDGDVAQ
TRPPPLARHLGFGGHGPRVAEKLSMLMGTRALAAERTQPYPRGDKNSTAP
TETLEIVPPALFFGDLRAGDGAATAKTIELCRDRGVQAFSTRYLGGQGGE
EAWRGAAAAADYEHEDVTADEVLAKWVLELGSGVIWRPSEVAEVARTLPL
ARFFLPVEWMTEIVYRGGCSPLEWATTLSRLLPPGGTPTEEELEKEVDEM
IERLMTEDPEDGTEDDVDD*
back to top