mRNA_H-elongata_contig60120.13546.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60120.13546.1
Unique NamemRNA_H-elongata_contig60120.13546.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60120.13546.1 vs. uniprot
Match: D7FP24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP24_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 2.980e-9
Identity = 35/64 (54.69%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   43 QRGCVWLTVEQPWKGRPVLRSVHGGGAARRPFFTYVVLYKPCEPDALEYIPTTLQKNASVYDHE 234
            Q   +WLTV Q  +GRPVLRS++  G A R    YVVLY+PC PD LEY+PT ++KNAS  D +
Sbjct:  151 QSANIWLTVGQS-RGRPVLRSLYCCGCAYRTC-CYVVLYRPCNPDVLEYLPT-VKKNASSGDED 211
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60120.13546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP24_ECTSI2.980e-954.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60120contigH-elongata_contig60120:1358..2346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930974.4648218-CDS-H-elongata_contig60120:1357..14901622930974.4648218-CDS-H-elongata_contig60120:1357..1490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60120 1358..1490 -
1691679647.2262158-CDS-H-elongata_contig60120:1357..14901691679647.2262158-CDS-H-elongata_contig60120:1357..1490Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60120 1358..1490 -
1622930974.480952-CDS-H-elongata_contig60120:2215..23461622930974.480952-CDS-H-elongata_contig60120:2215..2346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60120 2216..2346 -
1691679647.2338438-CDS-H-elongata_contig60120:2215..23461691679647.2338438-CDS-H-elongata_contig60120:2215..2346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60120 2216..2346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60120.13546.1prot_H-elongata_contig60120.13546.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60120 1358..2346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60120.13546.1

>prot_H-elongata_contig60120.13546.1 ID=prot_H-elongata_contig60120.13546.1|Name=mRNA_H-elongata_contig60120.13546.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
IAATAAKKEEPVHRQRGCVWLTVEQPWKGRPVLRSVHGGGAARRPFFTYV
VLYKPCEPDALEYIPTTLQKNASVYDHELELGFDEQDH
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mRNA from alignment at H-elongata_contig60120:1358..2346-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60120.13546.1 ID=mRNA_H-elongata_contig60120.13546.1|Name=mRNA_H-elongata_contig60120.13546.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=989bp|location=Sequence derived from alignment at H-elongata_contig60120:1358..2346- (Himanthalia elongata Himel1 dioecious)
ATAGCGGCGACGGCGGCGAAAAAAGAAGAGCCGGTCCATCGACAGAGAGG
CTGTGTCTGGCTTACCGTGGAACAACCGTGGAAGGGGCGACCCGTGCTTC
GTTCGGTTCACGGTGGAGGTGCTGCGCGCAGGCGAGAGCTGGCCTTTCTA
AGAGAAACAAAGGTCTCTTTTTATCATTTATCCTTCTGGGTATCTCACTA
TCTCCGTGCCTCTTCTCTTTTGTGTCTATTTTTGTCTCTTTTGTGTCTAT
TTTTGTCTCTTTTGTGTCTATTTTTGTCTCTTTTGAGGTCTATTTTTGTC
TCTTTTGTGTCTATTTTGTCTATTTTGTGTCTGTCTCTGTATCTTTGCGT
ATTTGTGTGTTTGTGTCGTGCCATGTGAACACCTGCACAGTATGAGTAGG
TGTAAGTGTAATATAGCTTTACCGTCAAAAAGCAGAGAGTTACAGGGTTG
ACTTGGCCAGAGCGCACCACGCTTGCACTGCACTCGAGGAGCGATCATCC
CCTTCGCTCTTGGTGTATTGTGGCGCGGAAGTCCGAGAGTTGGCTTCTGC
GGCACTGATCGCTTAGCAAGCGTCTAATCGAGACGGAGACTACATCTCTC
CATCCCCGCGTGACACCACACAAAAGAGTAGAATGCTGCTGAGACTCCGC
CTGGAGGACCCTGCGCGAGCCGCCTCTTTTTGTTGGTGTCCAGGGCTTAT
CCGTCCCCTTCTATTTTAACCCCCTCGCGTACACGCTTATTTTTTCCGTT
GCGCTACTCTTTTTCTCAGTCTCTTCTTAGTTTTTCTTGGCCGATCCTTG
TCCCCCCCCCTCATAACGCCTCATCCTGCCCGATTCTCCCCCCGTCCCCC
CACCAGACCCTTCTTTACCTACGTGGTTCTCTATAAACCCTGCGAACCTG
ACGCTCTCGAGTACATCCCCACCACTCTCCAGAAAAATGCCTCTGTGTAC
GACCACGAACTCGAACTCGGCTTTGACGAACAAGACCAC
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Coding sequence (CDS) from alignment at H-elongata_contig60120:1358..2346-

>mRNA_H-elongata_contig60120.13546.1 ID=mRNA_H-elongata_contig60120.13546.1|Name=mRNA_H-elongata_contig60120.13546.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig60120:1358..2346- (Himanthalia elongata Himel1 dioecious)
ATAGCGGCGACGGCGGCGAAAAAAGAAGAGCCGGTCCATCGACAGAGAGG
CTGTGTCTGGCTTACCGTGGAACAACCGTGGAAGGGGCGACCCGTGCTTC
GTTCGGTTCACGGTGGAGGTGCTGCGCGCAGATAGCGGCGACGGCGGCGA
AAAAAGAAGAGCCGGTCCATCGACAGAGAGGCTGTGTCTGGCTTACCGTG
GAACAACCGTGGAAGGGGCGACCCGTGCTTCGTTCGGTTCACGGTGGAGG
TGCTGCGCGCAGACCCTTCTTTACCTACGTGGTTCTCTATAAACCCTGCG
AACCTGACGCTCTCGAGTACATCCCCACCACTCTCCAGAAAAATGCCTCT
GTGTACGACCACGAACTCGAACTCGGCTTTGACGAACAAGACCACACCCT
TCTTTACCTACGTGGTTCTCTATAAACCCTGCGAACCTGACGCTCTCGAG
TACATCCCCACCACTCTCCAGAAAAATGCCTCTGTGTACGACCACGAACT
CGAACTCGGCTTTGACGAACAAGACCAC
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