mRNA_H-elongata_contig60014.13535.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig60014.13535.1
Unique NamemRNA_H-elongata_contig60014.13535.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig60014.13535.1 vs. uniprot
Match: D7G2E4_ECTSI (Cytochrome P450 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2E4_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 3.470e-36
Identity = 60/115 (52.17%), Postives = 81/115 (70.43%), Query Frame = 1 
Query:    1 RMYPVVPGAFRKALRDISFNNFKIPAGSTISWNVLSGYRSESLYPEPKKFCPFRFLHEGKSTNHPSA--------EIKQPQPPMWGYGRHMCPGRELAKMEILVFLRMFLSKFEY 321
            R++P V   FR   +DIS+N + IP G TISWN+  G  +E+LYPEP+KFCPFRFLH G+  +  SA           QP PPMWG+G+HMCPGRELAK+E+++F++ FL KF++
Sbjct:  181 RLHPSVGAVFRTTRKDISYNGYLIPEGETISWNLNQGSLAETLYPEPRKFCPFRFLHGGEKKDTDSAASPGAGARSTGQPIPPMWGFGKHMCPGRELAKLEMVLFMKTFLPKFDF 295
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BLAST of mRNA_H-elongata_contig60014.13535.1 vs. uniprot
Match: D7G2E2_ECTSI (Cytochrome P450 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2E2_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 2.000e-35
Identity = 59/115 (51.30%), Postives = 82/115 (71.30%), Query Frame = 1 
Query:    1 RMYPVVPGAFRKALRDISFNNFKIPAGSTISWNVLSGYRSESLYPEPKKFCPFRFLHEGKSTNHPSAEIK--------QPQPPMWGYGRHMCPGRELAKMEILVFLRMFLSKFEY 321
            R+YP + G  RKA +D S+N + IP G TI+WN++ G R+E LYPEP+KFCPFRFLH  +  +  SA           QP PPMWG+G+HMCPGR+LAK+E+++F++ FL KF++
Sbjct:  405 RLYPAIAGLSRKARKDFSYNGYLIPEGQTINWNLIHGSRAEKLYPEPEKFCPFRFLHGDEKKDTDSAASPGTGARSPGQPIPPMWGFGKHMCPGRDLAKLEMVLFMKTFLPKFDF 519
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BLAST of mRNA_H-elongata_contig60014.13535.1 vs. uniprot
Match: A0A6H5KBE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBE2_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 2.790e-35
Identity = 59/115 (51.30%), Postives = 81/115 (70.43%), Query Frame = 1 
Query:    1 RMYPVVPGAFRKALRDISFNNFKIPAGSTISWNVLSGYRSESLYPEPKKFCPFRFLHEGKSTNHPSAEIK--------QPQPPMWGYGRHMCPGRELAKMEILVFLRMFLSKFEY 321
            R++P V   FR   +DIS+N + IP G TISWN+  G  +E+LYPEP++FCPFRFLH G+  +  SA           QP PPMWG+G+HMCPGRELAK+E+++F++ FL KF++
Sbjct:  316 RLHPAVGSVFRTTRKDISYNGYLIPEGETISWNLTQGSLAETLYPEPRQFCPFRFLHGGEKKDTDSAASPGTGARRSGQPIPPMWGFGKHMCPGRELAKLEMILFMKTFLPKFDF 430
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BLAST of mRNA_H-elongata_contig60014.13535.1 vs. uniprot
Match: A0A6H5JJ64_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ64_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 7.240e-30
Identity = 51/101 (50.50%), Postives = 73/101 (72.28%), Query Frame = 1 
Query:   43 RDISFNNFKIPAGSTISWNVLSGYRSESLYPEPKKFCPFRFLHEGKSTNHPSAEIK--------QPQPPMWGYGRHMCPGRELAKMEILVFLRMFLSKFEY 321
            +D S+N + IP G T +WN++ G R+E LYPEP+KFCPFRFLH G+  +  +A           QP PPMWG+G+HMCPGR+LAK+EI++F++ F+ KF++
Sbjct:  401 KDFSYNGYLIPEGQTFNWNLIHGSRAEKLYPEPQKFCPFRFLHGGEKKDTDNAASPGTGARSSGQPIPPMWGFGKHMCPGRDLAKVEIVLFMKTFMPKFDF 501
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BLAST of mRNA_H-elongata_contig60014.13535.1 vs. uniprot
Match: A0A6P5WLC5_DURZI (beta-amyrin 28-oxidase-like n=2 Tax=Malvaceae TaxID=3629 RepID=A0A6P5WLC5_DURZI)

HSP 1 Score: 82.8 bits (203), Expect = 5.020e-18
Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = 1 
Query:    1 RMYPVVPGAFRKALRDISFNNFKIPAGSTISWNVLSGYRSESLYPEPKKFCPFRFLHEGKSTNHPSAEIKQPQPPMWGYGRHMCPGRELAKMEILVFLRMFLSKFEY 321
            R+ P + GAFR+A+ D +F  F IP G  + WNV S +++   +PEP+KF P RF  EG   N P+     P    +G G  MCPG+E A++EILVF+   + KF +
Sbjct:   13 RLAPPLQGAFREAITDFTFAGFSIPKGWKLHWNVNSTHKNAKWFPEPEKFDPARF--EG---NGPAPYTYVP----FGGGPRMCPGKEYARLEILVFMHNLIKKFNW 110
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BLAST of mRNA_H-elongata_contig60014.13535.1 vs. uniprot
Match: A0A1R3J7N8_COCAP (Cytochrome P450 n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3J7N8_COCAP)

HSP 1 Score: 82.0 bits (201), Expect = 1.710e-17
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 1 
Query:    1 RMYPVVPGAFRKALRDISFNNFKIPAGSTISWNVLSGYRSESLYPEPKKFCPFRFLHEGKSTNHPSAEIKQPQPPMWGYGRHMCPGRELAKMEILVFLRMFLSKFEY 321
            R+ P + GAFR+A+ D  FN F IP G  + W+  S +R+   +PEP+KF P RF  EG   N P+     P    +G G  MCPG+E A++EILVF+   +++F++
Sbjct:   33 RLAPPLQGAFREAINDFMFNGFSIPKGWKLYWSANSTHRNPECFPEPEKFDPSRF--EG---NGPAPYTFVP----FGGGPRMCPGKEYARLEILVFMHNLVTRFKW 130
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BLAST of mRNA_H-elongata_contig60014.13535.1 vs. uniprot
Match: UPI0018F80427 (beta-amyrin 28-monooxygenase-like n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=UPI0018F80427)

HSP 1 Score: 85.1 bits (209), Expect = 4.200e-17
Identity = 44/107 (41.12%), Postives = 63/107 (58.88%), Query Frame = 1 
Query:    1 RMYPVVPGAFRKALRDISFNNFKIPAGSTISWNVLSGYRSESLYPEPKKFCPFRFLHEGKSTNHPSAEIKQPQPPMWGYGRHMCPGRELAKMEILVFLRMFLSKFEY 321
            R+ P + GAFR+A+ D  FN F IP GS + WN  S ++S   +PEP+KF P RF   G     P+     P    +G G  MCPG+E A++EILVF+   + +F++
Sbjct:  355 RLAPPLQGAFREAINDFIFNGFYIPKGSKVYWNANSTHKSPEFFPEPEKFDPSRFKGNG-----PAPYTFVP----FGGGPRMCPGKEYARLEILVFVHNLVKRFKW 452
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BLAST of mRNA_H-elongata_contig60014.13535.1 vs. uniprot
Match: A0A1R3J036_COCAP (Cytochrome P450 n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3J036_COCAP)

HSP 1 Score: 80.9 bits (198), Expect = 4.600e-17
Identity = 42/107 (39.25%), Postives = 64/107 (59.81%), Query Frame = 1 
Query:    1 RMYPVVPGAFRKALRDISFNNFKIPAGSTISWNVLSGYRSESLYPEPKKFCPFRFLHEGKSTNHPSAEIKQPQPPMWGYGRHMCPGRELAKMEILVFLRMFLSKFEY 321
            R+ P + GAFR+A+ D +F  + +P G  + WNV S +++   +PEP+KF P RF  EG   N P+     P    +G G  MCPG+E A++EILVF+   + +F +
Sbjct:   33 RLAPPLQGAFREAIHDFTFAGYSVPKGWKLHWNVNSTHKNADCFPEPEKFVPSRF--EG---NGPAPYTFVP----FGGGPRMCPGKEYARLEILVFMHNVMKRFNW 130
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BLAST of mRNA_H-elongata_contig60014.13535.1 vs. uniprot
Match: A0A3S3M9R1_9MAGN (Cytochrome P450 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3M9R1_9MAGN)

HSP 1 Score: 84.0 bits (206), Expect = 6.980e-17
Identity = 46/107 (42.99%), Postives = 66/107 (61.68%), Query Frame = 1 
Query:    1 RMYPVVPGAFRKALRDISFNNFKIPAGSTISWNVLSGYRSESLYPEPKKFCPFRFLHEGKSTNHPSAEIKQPQPPMWGYGRHMCPGRELAKMEILVFLRMFLSKFEY 321
            R+ P + G FRKA+ D S+++F IP G ++ W V S ++SE  +PEP+KF P RF  EG   + P+     P    +G G  MCPGRE A++EILVFL   + +F +
Sbjct:  242 RLSPPIQGTFRKAIVDFSYSSFSIPKGWSVWWTVSSTHKSEEYFPEPEKFNPSRF--EG---DIPAPYTYVP----FGGGPRMCPGREFARIEILVFLHNLVREFRW 339
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BLAST of mRNA_H-elongata_contig60014.13535.1 vs. uniprot
Match: A0A834G931_RHOSS (Uncharacterized protein n=3 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834G931_RHOSS)

HSP 1 Score: 84.3 bits (207), Expect = 7.830e-17
Identity = 43/106 (40.57%), Postives = 58/106 (54.72%), Query Frame = 1 
Query:   19 PGAFRKALRDISFNNFKIPAGSTISWNVLSGYRSESLYPEPKKFCPFRFLHEGKSTNHPSAEIKQPQPPMWGY-----GRHMCPGRELAKMEILVFLRMFLSKFEY 321
            PG FR+AL D ++N F IP G  I WN  S +R+   +PEP+KF P RF   G              PP + Y     G  MCPG+ELA++EILVF+   + +F +
Sbjct:  356 PGTFREALTDFTYNGFSIPKGCKIYWNARSTHRNHEFFPEPQKFDPSRFEGSG--------------PPPYAYAPFGGGPRMCPGKELARLEILVFMHHLVKRFRW 447
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig60014.13535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2E4_ECTSI3.470e-3652.17Cytochrome P450 n=1 Tax=Ectocarpus siliculosus Tax... [more]
D7G2E2_ECTSI2.000e-3551.30Cytochrome P450 n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5KBE2_9PHAE2.790e-3551.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ64_9PHAE7.240e-3050.50CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6P5WLC5_DURZI5.020e-1842.06beta-amyrin 28-oxidase-like n=2 Tax=Malvaceae TaxI... [more]
A0A1R3J7N8_COCAP1.710e-1741.12Cytochrome P450 n=1 Tax=Corchorus capsularis TaxID... [more]
UPI0018F804274.200e-1741.12beta-amyrin 28-monooxygenase-like n=1 Tax=Triptery... [more]
A0A1R3J036_COCAP4.600e-1739.25Cytochrome P450 n=1 Tax=Corchorus capsularis TaxID... [more]
A0A3S3M9R1_9MAGN6.980e-1742.99Cytochrome P450 n=1 Tax=Cinnamomum micranthum f. k... [more]
A0A834G931_RHOSS7.830e-1740.57Uncharacterized protein n=3 Tax=Rhododendron simsi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig60014contigH-elongata_contig60014:1749..2484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.2
Seed ortholog evalue1.8e-29
Seed eggNOG ortholog2880.D7G2E2
Preferred nameCYP26A1
KEGG rclassRC00144,RC00154,RC00206,RC00257,RC00524,RC00613,RC00661,RC00723,RC00724,RC00773,RC01218,RC01453,RC01504,RC01622,RC02078,RC02079,RC02664,RC03041,RC03235
KEGG koko:K04123,ko:K07437,ko:K09587,ko:K09588,ko:K09589,ko:K09590,ko:K09843,ko:K12637,ko:K12638,ko:K12639,ko:K12640,ko:K12664,ko:K12665,ko:K17875,ko:K20667
KEGG ReactionR06294,R06295,R06296,R06297,R07202,R07430,R07431,R07444,R07445,R07448,R07449,R07450,R07451,R07452,R07453,R07454,R07455,R07457,R07458,R07471,R07786,R07787,R07791,R07792,R08390,R08392,R08840,R08841,R09815,R09816,R09817,R10067,R10669,R10682,R10683,R10684
KEGG Pathwayko00830,ko00904,ko00905,ko00906,ko01100,ko01110,map00830,map00904,map00905,map00906,map01100,map01110
KEGG ModuleM00371
GOsGO:0000003,GO:0000226,GO:0000280,GO:0000902,GO:0000904,GO:0001101,GO:0001501,GO:0001523,GO:0001568,GO:0001578,GO:0001655,GO:0001709,GO:0001756,GO:0001767,GO:0001768,GO:0001775,GO:0001822,GO:0001944,GO:0001972,GO:0002376,GO:0002682,GO:0002694,GO:0003002,GO:0003006,GO:0003007,GO:0003131,GO:0003151,GO:0003674,GO:0003824,GO:0004497,GO:0005488,GO:0005501,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006066,GO:0006081,GO:0006082,GO:0006091,GO:0006629,GO:0006694,GO:0006714,GO:0006720,GO:0006721,GO:0006722,GO:0006766,GO:0006775,GO:0006805,GO:0006950,GO:0006952,GO:0006954,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007140,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007276,GO:0007283,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007507,GO:0007584,GO:0008144,GO:0008150,GO:0008152,GO:0008202,GO:0008219,GO:0008289,GO:0008299,GO:0008300,GO:0008395,GO:0008401,GO:0008544,GO:0008610,GO:0009056,GO:0009058,GO:0009111,GO:0009314,GO:0009410,GO:0009411,GO:0009414,GO:0009415,GO:0009416,GO:0009555,GO:0009605,GO:0009628,GO:0009639,GO:0009642,GO:0009646,GO:0009647,GO:0009653,GO:0009685,GO:0009686,GO:0009687,GO:0009719,GO:0009725,GO:0009741,GO:0009753,GO:0009755,GO:0009790,GO:0009791,GO:0009792,GO:0009826,GO:0009846,GO:0009856,GO:0009860,GO:0009867,GO:0009887,GO:0009888,GO:0009893,GO:0009908,GO:0009909,GO:0009911,GO:0009913,GO:0009932,GO:0009952,GO:0009954,GO:0009965,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010012,GO:0010016,GO:0010033,GO:0010035,GO:0010114,GO:0010154,GO:0010162,GO:0010171,GO:0010208,GO:0010224,GO:0010268,GO:0010295,GO:0010358,GO:0010431,GO:0010468,GO:0010584,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0010817,GO:0010830,GO:0010831,GO:0010927,GO:0012501,GO:0012505,GO:0014031,GO:0014032,GO:0014033,GO:0014070,GO:0014706,GO:0016020,GO:0016042,GO:0016043,GO:0016049,GO:0016053,GO:0016054,GO:0016101,GO:0016102,GO:0016103,GO:0016107,GO:0016114,GO:0016115,GO:0016125,GO:0016128,GO:0016129,GO:0016131,GO:0016132,GO:0016134,GO:0016135,GO:0016137,GO:0016138,GO:0016202,GO:0016491,GO:0016705,GO:0016709,GO:0019222,GO:0019752,GO:0019825,GO:0019840,GO:0019953,GO:0020037,GO:0021532,GO:0021546,GO:0021570,GO:0021593,GO:0021661,GO:0021700,GO:0021797,GO:0021871,GO:0021903,GO:0021915,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022611,GO:0022900,GO:0023051,GO:0023052,GO:0023057,GO:0030010,GO:0030104,GO:0030154,GO:0030198,GO:0030216,GO:0030278,GO:0030326,GO:0030522,GO:0030855,GO:0030900,GO:0030902,GO:0030917,GO:0031016,GO:0031090,GO:0031406,GO:0031424,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032526,GO:0032787,GO:0032870,GO:0032989,GO:0033189,GO:0033273,GO:0033293,GO:0033561,GO:0033993,GO:0034653,GO:0034672,GO:0034754,GO:0035051,GO:0035107,GO:0035108,GO:0035113,GO:0035282,GO:0035295,GO:0036094,GO:0039017,GO:0040007,GO:0042110,GO:0042175,GO:0042221,GO:0042363,GO:0042445,GO:0042446,GO:0042476,GO:0042573,GO:0042574,GO:0042592,GO:0042692,GO:0042814,GO:0043009,GO:0043062,GO:0043167,GO:0043168,GO:0043177,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043288,GO:0043290,GO:0043436,GO:0043586,GO:0043587,GO:0043588,GO:0044085,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0045165,GO:0045229,GO:0045321,GO:0045580,GO:0045595,GO:0045597,GO:0045619,GO:0045844,GO:0046164,GO:0046345,GO:0046394,GO:0046395,GO:0046649,GO:0046906,GO:0048037,GO:0048229,GO:0048232,GO:0048284,GO:0048285,GO:0048316,GO:0048366,GO:0048367,GO:0048384,GO:0048385,GO:0048387,GO:0048437,GO:0048438,GO:0048441,GO:0048443,GO:0048444,GO:0048448,GO:0048449,GO:0048455,GO:0048465,GO:0048466,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048532,GO:0048562,GO:0048568,GO:0048580,GO:0048582,GO:0048583,GO:0048585,GO:0048588,GO:0048589,GO:0048598,GO:0048608,GO:0048609,GO:0048634,GO:0048636,GO:0048641,GO:0048643,GO:0048646,GO:0048653,GO:0048654,GO:0048655,GO:0048656,GO:0048657,GO:0048658,GO:0048701,GO:0048704,GO:0048705,GO:0048706,GO:0048729,GO:0048731,GO:0048736,GO:0048738,GO:0048762,GO:0048793,GO:0048827,GO:0048831,GO:0048838,GO:0048854,GO:0048856,GO:0048863,GO:0048864,GO:0048868,GO:0048869,GO:0048871,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050878,GO:0050891,GO:0050896,GO:0051094,GO:0051146,GO:0051147,GO:0051149,GO:0051153,GO:0051155,GO:0051216,GO:0051239,GO:0051240,GO:0051249,GO:0051321,GO:0051704,GO:0051716,GO:0051777,GO:0055001,GO:0055002,GO:0055006,GO:0055007,GO:0055011,GO:0055013,GO:0055014,GO:0055088,GO:0055114,GO:0060173,GO:0060255,GO:0060322,GO:0060323,GO:0060348,GO:0060349,GO:0060363,GO:0060365,GO:0060429,GO:0060485,GO:0060536,GO:0060537,GO:0060560,GO:0061004,GO:0061053,GO:0061061,GO:0061436,GO:0061448,GO:0061458,GO:0065007,GO:0065008,GO:0070268,GO:0070887,GO:0071229,GO:0071295,GO:0071299,GO:0071300,GO:0071310,GO:0071395,GO:0071396,GO:0071466,GO:0071495,GO:0071496,GO:0071695,GO:0071704,GO:0071840,GO:0072001,GO:0072048,GO:0072098,GO:0072329,GO:0072358,GO:0072359,GO:0080132,GO:0085029,GO:0090242,GO:0090567,GO:0090596,GO:0090696,GO:0090697,GO:0090698,GO:0097094,GO:0097159,GO:0097438,GO:0098827,GO:0099402,GO:0140013,GO:1901135,GO:1901137,GO:1901360,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1901615,GO:1901616,GO:1901617,GO:1901657,GO:1901659,GO:1901700,GO:1901701,GO:1901861,GO:1901863,GO:1902105,GO:1902644,GO:1902809,GO:1902811,GO:1903046,GO:1903706,GO:1904888,GO:1905392,GO:1905393,GO:2000026,GO:2000241,GO:2000243,GO:2001014,GO:2001016,GO:2001035,GO:2001037
EggNOG free text desc.cytochrome p450
EggNOG OGsCOG2124@1,KOG0157@2759
EC1.14.13.112,1.14.13.134,1.14.13.201,1.14.13.79,1.14.13.93
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00199,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size318
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig60014.13535.1prot_H-elongata_contig60014.13535.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig60014 1749..2481 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.2917333-CDS-H-elongata_contig60014:1748..19231622930973.2917333-CDS-H-elongata_contig60014:1748..1923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60014 1749..1923 -
1691679646.799978-CDS-H-elongata_contig60014:1748..19231691679646.799978-CDS-H-elongata_contig60014:1748..1923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60014 1749..1923 -
1622930973.3125596-CDS-H-elongata_contig60014:2338..24811622930973.3125596-CDS-H-elongata_contig60014:2338..2481Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60014 2339..2481 -
1691679646.8134801-CDS-H-elongata_contig60014:2338..24811691679646.8134801-CDS-H-elongata_contig60014:2338..2481Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig60014 2339..2481 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.330838-UTR-H-elongata_contig60014:2481..24841622930973.330838-UTR-H-elongata_contig60014:2481..2484Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60014 2482..2484 -
1691679646.8218071-UTR-H-elongata_contig60014:2481..24841691679646.8218071-UTR-H-elongata_contig60014:2481..2484Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig60014 2482..2484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig60014.13535.1

>prot_H-elongata_contig60014.13535.1 ID=prot_H-elongata_contig60014.13535.1|Name=mRNA_H-elongata_contig60014.13535.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MYPVVPGAFRKALRDISFNNFKIPAGSTISWNVLSGYRSESLYPEPKKFC
PFRFLHEGKSTNHPSAEIKQPQPPMWGYGRHMCPGRELAKMEILVFLRMF
LSKFEY
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mRNA from alignment at H-elongata_contig60014:1749..2484-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig60014.13535.1 ID=mRNA_H-elongata_contig60014.13535.1|Name=mRNA_H-elongata_contig60014.13535.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=736bp|location=Sequence derived from alignment at H-elongata_contig60014:1749..2484- (Himanthalia elongata Himel1 dioecious)
AGGATGTATCCTGTGGTCCCTGGCGCCTTCCGAAAGGCTCTGAGGGACAT
ATCATTCAATAATTTCAAGATCCCTGCTGGGTCCACGATCAGCTGGAACG
TCCTCAGCGGGTACAGGTCGGAAAGCCTTTACCCTGAGCCGAAGAAGTGA
GTTTGCTTTCTGTTTTGGAAGCACGGGCCGTTCGCTTATTCATGATTGAC
GGGTTCACCCCAGGCCGGAGCTGCGTCCAGCGCATCTACTGGCGCTCGGT
GCGATCCTTTAGGTCGAGATCATCGAAGGCTCCCTCGTATCCCGATCATA
TGCTGGCGCCAGCACGCGGTTCATGCAAGTCTTTAGGTTTACACGATATT
TCCGCCATGACCCACACGGTTATATTTTAGTCTAAGCTTACTTCCCCTTT
TTGGTGTCAGTGTCCGACGAGGGAAAACCGAGCTAACATATAGCGGAAAA
CCGATCGTCACAATAACTAAGTGGCGATAGTTCGGGCAGTGCGTCACTGC
ATATTTGCCTCCTATTTCCCAGTTGAATATACCCATGTAATCCCGTCTCG
TTCCGATCCAGGTTTTGTCCGTTCCGCTTTTTACACGAGGGAAAATCAAC
CAATCATCCCAGTGCCGAAATTAAGCAGCCCCAGCCACCTATGTGGGGAT
ATGGACGTCACATGTGCCCTGGGCGAGAATTGGCCAAGATGGAAATTCTG
GTATTCCTCAGGATGTTTCTATCGAAGTTTGAGTAC
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Coding sequence (CDS) from alignment at H-elongata_contig60014:1749..2484-

>mRNA_H-elongata_contig60014.13535.1 ID=mRNA_H-elongata_contig60014.13535.1|Name=mRNA_H-elongata_contig60014.13535.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig60014:1749..2484- (Himanthalia elongata Himel1 dioecious)
ATGTATCCTGTGGTCCCTGGCGCCTTCCGAAAGGCTCTGAGGGACATATC
ATTCAATAATTTCAAGATCCCTGCTGGGTCCACGATCAGCTGGAACGTCC
TCAGCGGGTACAGGTCGGAAAGCCTTTACCCTGAGCCGAAGAAATGTATC
CTGTGGTCCCTGGCGCCTTCCGAAAGGCTCTGAGGGACATATCATTCAAT
AATTTCAAGATCCCTGCTGGGTCCACGATCAGCTGGAACGTCCTCAGCGG
GTACAGGTCGGAAAGCCTTTACCCTGAGCCGAAGAAGTTTTGTCCGTTCC
GCTTTTTACACGAGGGAAAATCAACCAATCATCCCAGTGCCGAAATTAAG
CAGCCCCAGCCACCTATGTGGGGATATGGACGTCACATGTGCCCTGGGCG
AGAATTGGCCAAGATGGAAATTCTGGTATTCCTCAGGATGTTTCTATCGA
AGTTTGAGTACGTTTTGTCCGTTCCGCTTTTTACACGAGGGAAAATCAAC
CAATCATCCCAGTGCCGAAATTAAGCAGCCCCAGCCACCTATGTGGGGAT
ATGGACGTCACATGTGCCCTGGGCGAGAATTGGCCAAGATGGAAATTCTG
GTATTCCTCAGGATGTTTCTATCGAAGTTTGAGTAC
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