mRNA_H-elongata_contig59913.13526.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59913.13526.1
Unique NamemRNA_H-elongata_contig59913.13526.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59913.13526.1 vs. uniprot
Match: A0A6H5JVE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE7_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.490e-9
Identity = 55/153 (35.95%), Postives = 73/153 (47.71%), Query Frame = 1 
Query:  121 QQIAALAWTAVPVG------CSPFDSGLLSRVQIERLPAINR--------LRRDCARFTWSPPPALQL------RGGA-PAAVSFADDFN---LGVNGTEAPQQPSKGRESLSLQYDKTGSLPRAGEHDGQIAALALPALLSLLVDPMLSIVD 507
              +  + WT V +       C  + + LL  V ++   A  R        LR +C R     P  ++L      RGGA PA V  ADD N    G NG  A  Q   G     ++ +    L    +HDGQI+ALALPAL+SLLVDP+LS+VD
Sbjct:    3 HHLYGIGWTQVILYVSSLALCCRYGTSLLPGVVLQGRSAAARGFQQRHHPLRSNCPRLPPGEPDPVRLSRLSRLRGGAQPAEVYVADDSNESYAGGNGDGAENQAKAG----DMKKEGKWLLLGVSQHDGQISALALPALMSLLVDPILSLVD 151
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59913.13526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JVE7_9PHAE2.490e-935.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59913contigH-elongata_contig59913:169..2998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size510
Cds size507
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930970.6527019-CDS-H-elongata_contig59913:170..2401622930970.6527019-CDS-H-elongata_contig59913:170..240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59913 171..240 -
1691679645.3195717-CDS-H-elongata_contig59913:170..2401691679645.3195717-CDS-H-elongata_contig59913:170..240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59913 171..240 -
1622930970.6744843-CDS-H-elongata_contig59913:2561..29981622930970.6744843-CDS-H-elongata_contig59913:2561..2998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59913 2562..2998 -
1691679645.338404-CDS-H-elongata_contig59913:2561..29981691679645.338404-CDS-H-elongata_contig59913:2561..2998Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59913 2562..2998 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59913.13526.1prot_H-elongata_contig59913.13526.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59913 171..2998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59913.13526.1

>prot_H-elongata_contig59913.13526.1 ID=prot_H-elongata_contig59913.13526.1|Name=mRNA_H-elongata_contig59913.13526.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp
RRSQEEISSCFPWTHGSMPGRSLHGIRAILYIHIFAGFLHQQIAALAWTA
VPVGCSPFDSGLLSRVQIERLPAINRLRRDCARFTWSPPPALQLRGGAPA
AVSFADDFNLGVNGTEAPQQPSKGRESLSLQYDKTGSLPRAGEHDGQIAA
LALPALLSLLVDPMLSIVD
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mRNA from alignment at H-elongata_contig59913:169..2998-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59913.13526.1 ID=mRNA_H-elongata_contig59913.13526.1|Name=mRNA_H-elongata_contig59913.13526.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2830bp|location=Sequence derived from alignment at H-elongata_contig59913:169..2998- (Himanthalia elongata Himel1 dioecious)
CGCCGCTCACAGGAGGAAATCAGCAGTTGTTTTCCCTGGACTCACGGGAG
TATGCCTGGCCGATCGCTCCATGGAATAAGAGCTATACTTTATATACATA
TATTTGCGGGGTTTTTGCATCAGCAAATCGCGGCTCTTGCCTGGACGGCA
GTGCCAGTGGGTTGCTCACCGTTTGATTCGGGTCTGTTGTCGCGCGTCCA
GATCGAGAGACTGCCTGCCATTAACCGGTTGAGAAGAGATTGTGCACGTT
TTACGTGGTCGCCTCCGCCTGCCCTTCAACTACGGGGTGGAGCACCTGCC
GCGGTTTCTTTTGCGGATGACTTCAATCTTGGAGTTAATGGAACAGAAGC
ACCGCAACAGCCCTCCAAAGGACGAGAGTCTCTCTCTCTACAGTACGATA
AGACCGGATCGCTTCCGCGAGCAGGCGAGCATGATGGGTGAGAAAGCCAG
GGATAGATATTTTGACCCCGAAATCCGTGGTGATTGTTGGCGGTGATTAA
TCAATGCTGTTATGTCATCGTTGCCTGGCGCGAGCAGCTCGAATGACCCT
TTTTGCCCTGGTTGTTAGCGCCTACCATGGATCCACGGCGCTAGTGCTAA
CCCAATTTTACCCCCACCCCTACCAACTCCAGCTGGCAAGCGTAATCCCA
AAGCATGATAAATGCGAGGTGCTCGTGACCTGTCTAGCGATACTGAGTAC
TACGTACAGACTAGGAGATACGAGGTTACCAATACCCGGGACTGTCATTT
TCAGTTTTTTTACTAATAAAATAATCAAATCCACAGACAGTTCGGCGAGT
GTCCTGAAATGGCCTCTCCTACATCATAATGTCGACCCGATGCGGCTATC
ATTGGGGAACCCAATTATTAATTATTATCGTGTGGCGATTTTGTGGTGGT
GACCAGGAATCTACTCACTCAAACCTGACTATAGTTGCTACGCTGGAGTT
CACGATCCTGACGTTAGGAAAGCGTGGATATTCGGAGGGTTTGAATGGGT
ATTTTAAAATAAAGTTAGGAAAAATAATGTCAGGCGTACTCTCTGGTCTA
CCGTAGGTAAGGACCGAGGATGGTCGATCGATGTAACCGCTCAAATTTTC
TATATTCTATACTAGTAGTTAGAAGACACGCAACGGACAAAAGCGTTTTG
ACGGGATCTCTCAAGAAGACTTGTTATTAGAATGCAACACCTATTGTCCC
GTCTGTGCTGGTGAAAAACGCCGTGTGGCTCAATGGTCCCTCGGCGTGTG
GTAAGCCGTATCACCTCCTTTTTACAGGTTGGCTGATAAAGACGGTGTCC
CGTGCGTCACGCTCTGGCTCCTCAACACCTTTGTGTCCGTATTTCAATGA
GAGTCGAGCTACGGCAGTCATTGCTTATACGGCTGATGATGCTTTCTTCG
TATTATATATTAGTGATTGGTTAACACGCGAGAACTCCCTAATAGTACAT
GTATAAAATAGCCCGTTCTTAAATATTTCGTCTGTCCCCTGCTGCGCCCG
GAGAGATCGCAGAATATCCCTTCCAGGTTGGTCAATCCCACACTGTATCT
AATTCAAGACCTAGTGCTAGGAAGGGAGTGAGGGACCACCTCAGCTGTCT
CTTCCGCACGACGGGAGGTTACACACGCACCCAAGACTCTTACGATAAAA
TCCATGCATGTGCTCCACATCCAGCAGTGATGTAGCTTAATTGACTTAAC
CGTCGCAAAAGCCCTCCGGCGACAACGCTGGAGATCATAAAAACTCTTGG
AAACTCCGAGAACTACTCGTTGTTAACGGTTGCTGCTGTAGAATAGGAGC
AGTTCGCAGGGCGTAGACGACATGGCCATAAAACCACAAACCTAGATATG
AATATCCCCCCCTCCCCACTGTACCTTCTATCTACTCTACCACTCTGGGT
GTTAGGCGACTTCTTCGAAAAGATCTCGCCCAGATATCGTCGAACCCATA
GCGTTTGCTCTAATAGTTTGCGTCTGAGCTGTGCAGGGAAAAAGGAGACG
GAGACACTGCTCCCTGTGGGTGGCGTTAAATGTGCCACCTCCAGCATGCA
ACTGGTGTCCGAAATTAAACGCTACACGACGGTATCTGAATTGTTTCATC
ATCACAGTTGGCCGAGGGGGAGATATACATACACCCTCCCACCCTCCTAC
ACAAACCTAACCGCTACCTTATGACGCCAACGACTGAAGCCAACCTTGTA
AAGCTGCGGAAACCAGGTCCATCTATGGGTTCCCAACGATCAATGTGTCT
CTCTCTCTTCGTCTGGTTCCCGCCTGCACACAAGTGTTGATCGTGATGCT
GGGCACCCCCCCTCCCCATACCGCTCGTGAACCTCTCGGTTGAATTTCGT
TCGCGATCTTTTTATCTCGAGCATTCGCTGTCTCAACCTGTATACAAATC
GCCCTCCATGATATAATCTAAATGATGATGGCAGAAAAAAAAATTGTGAC
TCTTTCTCCTCGCTCTGCCCAAACCCTGCGCCCTCAATCAACAGGTGGAT
ATGTTTCCCTCGAGTTTTTGGTTTCCCTTATAACCACAACAAACAAAAAA
GAACAACGTGTCTGGAACGCCTTGGTGTGGATCGCGACACGATCTCATTT
AGTTCTACATCTACACCCTCGCCTCAACGAGACAGAAAGAAGAGGCATTT
CTCTGCCAGCCTGTCTCTCTATACATAGTCCTCTGTCAGCATGTTCCCCT
GACATCCACACGCACCGCATCTCCTGCTGTGCCCCACACGACGTACCACT
ATAAATAGGCAGATAGCTGCGCTGGCGCTGCCGGCCCTACTTTCCTTGCT
GGTGGATCCCATGCTGTCAATCGTGGATAC
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Coding sequence (CDS) from alignment at H-elongata_contig59913:169..2998-

>mRNA_H-elongata_contig59913.13526.1 ID=mRNA_H-elongata_contig59913.13526.1|Name=mRNA_H-elongata_contig59913.13526.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1014bp|location=Sequence derived from alignment at H-elongata_contig59913:169..2998- (Himanthalia elongata Himel1 dioecious)
CGCCGCTCACAGGAGGAAATCAGCAGTTGTTTTCCCTGGACTCACGGGAG
TATGCCTGGCCGATCGCTCCATGGAATAAGAGCTATACTTTATATACATA
TATTTGCGGGGTTTTTGCATCAGCAAATCGCGGCTCTTGCCTGGACGGCA
GTGCCAGTGGGTTGCTCACCGTTTGATTCGGGTCTGTTGTCGCGCGTCCA
GATCGAGAGACTGCCTGCCATTAACCGGTTGAGAAGAGATTGTGCACGTT
TTACGTGGTCGCCTCCGCCTGCCCTTCAACTACGGGGTGGAGCACCTGCC
GCGGTTTCTTTTGCGGATGACTTCAATCTTGGAGTTAATGGAACAGAAGC
ACCGCAACAGCCCTCCAAAGGACGAGAGTCTCTCTCTCTACAGTACGATA
AGACCGGATCGCTTCCGCGAGCAGGCGAGCATGATGGCGCCGCTCACAGG
AGGAAATCAGCAGTTGTTTTCCCTGGACTCACGGGAGTATGCCTGGCCGA
TCGCTCCATGGAATAAGAGCTATACTTTATATACATATATTTGCGGGGTT
TTTGCATCAGCAAATCGCGGCTCTTGCCTGGACGGCAGTGCCAGTGGGTT
GCTCACCGTTTGATTCGGGTCTGTTGTCGCGCGTCCAGATCGAGAGACTG
CCTGCCATTAACCGGTTGAGAAGAGATTGTGCACGTTTTACGTGGTCGCC
TCCGCCTGCCCTTCAACTACGGGGTGGAGCACCTGCCGCGGTTTCTTTTG
CGGATGACTTCAATCTTGGAGTTAATGGAACAGAAGCACCGCAACAGCCC
TCCAAAGGACGAGAGTCTCTCTCTCTACAGTACGATAAGACCGGATCGCT
TCCGCGAGCAGGCGAGCATGATGGGCAGATAGCTGCGCTGGCGCTGCCGG
CCCTACTTTCCTTGCTGGTGGATCCCATGCTGTCAATCGTGGATGCAGAT
AGCTGCGCTGGCGCTGCCGGCCCTACTTTCCTTGCTGGTGGATCCCATGC
TGTCAATCGTGGAT
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