mRNA_H-elongata_contig59902.13523.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59902.13523.1
Unique NamemRNA_H-elongata_contig59902.13523.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig59902.13523.1 vs. uniprot
Match: A0A6H5J784_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J784_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.200e-31
Identity = 55/75 (73.33%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:  148 DVSSAGEDSCQICFEHEHSTAMLPCGHGGVCWDCGLQVFALTEECPMCRTKIELLVRLDSSSRRIEGEEQFVSVI 372
            DV S GE SCQICF+ +HST MLPCGHGG+CWDCGLQ++ALTEECPMCRTKIELLV+LD   RR EGE+++VS +
Sbjct:  113 DVRSVGEHSCQICFDQDHSTVMLPCGHGGLCWDCGLQIYALTEECPMCRTKIELLVQLDGEKRRYEGEDEYVSAL 187
[Close]
BLAST of mRNA_H-elongata_contig59902.13523.1 vs. uniprot
Match: D8LGR8_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGR8_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 9.370e-31
Identity = 56/75 (74.67%), Postives = 66/75 (88.00%), Query Frame = 1 
Query:  148 DVSSAGEDSCQICFEHEHSTAMLPCGHGGVCWDCGLQVFALTEECPMCRTKIELLVRLDSSSRRIEGEEQFVSVI 372
            DV SAGE SCQICF+ +HST MLPCGHGG+CWDCGLQ++ALTEECPMCRTKIELLV+LD   RR EGE+++VS +
Sbjct:  246 DVRSAGEHSCQICFDQDHSTVMLPCGHGGLCWDCGLQIYALTEECPMCRTKIELLVQLDGEKRRYEGEDEYVSAL 320
[Close]
BLAST of mRNA_H-elongata_contig59902.13523.1 vs. uniprot
Match: D8LGR9_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGR9_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 5.180e-26
Identity = 49/73 (67.12%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:  148 DVSSAGEDSCQICFEHEHSTAMLPCGHGGVCWDCGLQVFALTEECPMCRTKIELLVRLDSSSRRIEGEEQFVS 366
            D+ SAGE +CQICF+ ++ST MLPCGHGG+CW+CGL ++ LTEECPMCRTKIELLV LD+ ++R EG  +FVS
Sbjct:  106 DLRSAGERACQICFDQDYSTVMLPCGHGGLCWECGLHIYTLTEECPMCRTKIELLVPLDNENKRFEGGCEFVS 178
[Close]
BLAST of mRNA_H-elongata_contig59902.13523.1 vs. uniprot
Match: A0A6H5J9Q3_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Q3_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 1.150e-23
Identity = 47/72 (65.28%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:  148 DVSSAGEDSCQICFEHEHSTAMLPCGHGGVCWDCGLQVFALTEECPMCRTKIELLVRLDSSSRRIEGEEQFV 363
            D+ SA E +CQICF   +ST MLPCGHGG+CW+CGL ++AL EECPMCRTKIELLV LD+ ++R EG  +FV
Sbjct:  153 DLRSAVERACQICFGQNYSTVMLPCGHGGLCWECGLHIYALKEECPMCRTKIELLVPLDNENKRFEGGREFV 224
[Close]
BLAST of mRNA_H-elongata_contig59902.13523.1 vs. uniprot
Match: Q23UD8_TETTS (Zinc finger, C3HC4 type (RING finger) protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q23UD8_TETTS)

HSP 1 Score: 69.7 bits (169), Expect = 1.120e-8
Identity = 39/135 (28.89%), Postives = 73/135 (54.07%), Query Frame = 1 
Query:    1 EFLRKILEWAKREAKTASVDXXXXXXPSETETDQCPPSSPNSRLQKGTSDVSSAGEDSCQICFEHEHSTAMLPCGHGGVCWDCGLQVFALTEECPMCRTKIELLVRLDSSSRRIEGEEQFVSVISS*GVSVAFDS 405
            EF +K+ + + +E    +V         ++++ Q      + +  K   D S+A    C ICFE+E  T  LPCGHGG+C++CG+ V   T EC +CR +I+ +V++D  S   + +++ +++ ++    V  D+
Sbjct:  775 EFEKKMQQQSNKELAKLNVKPKEMVKKQKSDSSQI-----SQKSYKENGDESNAN---CVICFENEPDTVYLPCGHGGICYECGMDVMKKTGECYLCRHEIKQVVQIDFKST--DAQKKIIAITAALEEKVDIDA 899
[Close]
BLAST of mRNA_H-elongata_contig59902.13523.1 vs. uniprot
Match: I7LXF1_TETTS (Zinc finger, C3HC4 type (RING finger) protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7LXF1_TETTS)

HSP 1 Score: 64.7 bits (156), Expect = 5.680e-8
Identity = 22/53 (41.51%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:  166 EDSCQICFEHEHSTAMLPCGHGGVCWDCGLQVFALTEECPMCRTKIELLVRLD 324
            E +C ICF++   +  + CGHGG+C+DC L ++ +T EC +CR KI+ ++++D
Sbjct:  162 EQNCLICFQNSQDSVFMNCGHGGICYDCSLDIWKITGECYLCREKIKQILQID 214
[Close]
BLAST of mRNA_H-elongata_contig59902.13523.1 vs. uniprot
Match: I7MAP5_TETTS (Zinc finger, C3HC4 type (RING finger) protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7MAP5_TETTS)

HSP 1 Score: 65.5 bits (158), Expect = 1.740e-7
Identity = 27/81 (33.33%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:  133 QKGTSDVSSAGEDSCQICFEHEHSTAMLPCGHGGVCWDCGLQVFALTEECPMCRTKIELLVRLDSSSRRIEGEEQFVSVIS 375
            QK   +  +    +C +CFE++  T  + CGHGG+C++C L ++  T+EC +CR K+E L +L+ +S   + ++  + V+S
Sbjct:  522 QKQEEESKNTSIQNCLVCFENQPDTVFMNCGHGGICYECALLIWKNTQECYLCRQKVEQLYQLEYNS---DNKDNVMKVLS 599
[Close]
BLAST of mRNA_H-elongata_contig59902.13523.1 vs. uniprot
Match: A0CW58_PARTE (RING-type domain-containing protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0CW58_PARTE)

HSP 1 Score: 64.3 bits (155), Expect = 3.550e-7
Identity = 26/65 (40.00%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:  145 SDVSSAGEDSCQICFEHEHSTAMLPCGHGGVCWDCGLQVFALTEECPMCRTKIELLVRLDSSSRR 339
            S +S +  +SC ICFE+E +   + CGHGGVC++C + ++   EEC +CR+KIE ++++  S ++
Sbjct:  430 SSISLSSINSCCICFENEPNALFMQCGHGGVCYNCAIDLWKNKEECYLCRSKIERVLQIKMSEQQ 494
[Close]
BLAST of mRNA_H-elongata_contig59902.13523.1 vs. uniprot
Match: A0A7M7N5B5_STRPU (Uncharacterized protein n=2 Tax=Echinacea TaxID=7674 RepID=A0A7M7N5B5_STRPU)

HSP 1 Score: 63.2 bits (152), Expect = 9.550e-7
Identity = 29/63 (46.03%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:  157 SAGEDSCQICFEHEHSTAMLPCGHGGVCWDCGLQVFALTEECPMCRTKIELLVRLDSSSRRIE 345
            S  E +C +CF+ E S    PCGHGG C DC +Q+    E+CP+CRT I   +R DSS+  +E
Sbjct:  561 SISETACSLCFDKEASVTFRPCGHGGFCPDCAIQL----EQCPLCRTIIMQRLRSDSSTIGVE 619
[Close]
BLAST of mRNA_H-elongata_contig59902.13523.1 vs. uniprot
Match: A0A6J1VV24_9SAUR (E3 ubiquitin-protein ligase NEURL3 n=2 Tax=Acanthophiinae TaxID=42167 RepID=A0A6J1VV24_9SAUR)

HSP 1 Score: 61.2 bits (147), Expect = 9.790e-7
Identity = 22/51 (43.14%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:  169 DSCQICFEHEHSTAMLPCGHGGVCWDCGLQVFALTEECPMCRTKIELLVRL 321
            + C +CF  E ST M PC H G C  C L++F ++  CP+CR K+E ++R+
Sbjct:  187 EDCMVCFASEASTMMFPCHHTGFCSSCSLKIFKISGRCPLCREKVEKILRI 237
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59902.13523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5J784_9PHAE1.200e-3173.33RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LGR8_ECTSI9.370e-3174.67RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LGR9_ECTSI5.180e-2667.12RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J9Q3_9PHAE1.150e-2365.28RING-type domain-containing protein n=1 Tax=Ectoca... [more]
Q23UD8_TETTS1.120e-828.89Zinc finger, C3HC4 type (RING finger) protein n=1 ... [more]
I7LXF1_TETTS5.680e-841.51Zinc finger, C3HC4 type (RING finger) protein n=1 ... [more]
I7MAP5_TETTS1.740e-733.33Zinc finger, C3HC4 type (RING finger) protein n=1 ... [more]
A0CW58_PARTE3.550e-740.00RING-type domain-containing protein n=1 Tax=Parame... [more]
A0A7M7N5B5_STRPU9.550e-746.03Uncharacterized protein n=2 Tax=Echinacea TaxID=76... [more]
A0A6J1VV24_9SAUR9.790e-743.14E3 ubiquitin-protein ligase NEURL3 n=2 Tax=Acantho... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59902contigH-elongata_contig59902:120..2328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue1.4e-28
Seed eggNOG ortholog2880.D8LGR8
EggNOG free text desc.Zinc finger, C3HC4 type (RING finger)
EggNOG OGs2D0IR@1,2SECD@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-07_005280.1
Exons3
Model size1713
Cds size381
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59902.13523.1prot_H-elongata_contig59902.13523.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59902 1450..2328 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930970.285063-UTR-H-elongata_contig59902:119..14491622930970.285063-UTR-H-elongata_contig59902:119..1449Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59902 120..1449 -
1691679645.2038457-UTR-H-elongata_contig59902:119..14491691679645.2038457-UTR-H-elongata_contig59902:119..1449Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59902 120..1449 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930970.2981694-CDS-H-elongata_contig59902:1449..15211622930970.2981694-CDS-H-elongata_contig59902:1449..1521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59902 1450..1521 -
1691679645.216314-CDS-H-elongata_contig59902:1449..15211691679645.216314-CDS-H-elongata_contig59902:1449..1521Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59902 1450..1521 -
1622930970.31528-CDS-H-elongata_contig59902:1686..18731622930970.31528-CDS-H-elongata_contig59902:1686..1873Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59902 1687..1873 -
1691679645.224543-CDS-H-elongata_contig59902:1686..18731691679645.224543-CDS-H-elongata_contig59902:1686..1873Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59902 1687..1873 -
1622930970.3326077-CDS-H-elongata_contig59902:2206..23281622930970.3326077-CDS-H-elongata_contig59902:2206..2328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59902 2207..2328 -
1691679645.235024-CDS-H-elongata_contig59902:2206..23281691679645.235024-CDS-H-elongata_contig59902:2206..2328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59902 2207..2328 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59902.13523.1

>prot_H-elongata_contig59902.13523.1 ID=prot_H-elongata_contig59902.13523.1|Name=mRNA_H-elongata_contig59902.13523.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
EFLRKILEWAKREAKTASVDSVDSVDPSETETDQCPPSSPNSRLQKGTSD
VSSAGEDSCQICFEHEHSTAMLPCGHGGVCWDCGLQVFALTEECPMCRTK
IELLVRLDSSSRRIEGEEQFVSVISS*
back to top

mRNA from alignment at H-elongata_contig59902:120..2328-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59902.13523.1 ID=mRNA_H-elongata_contig59902.13523.1|Name=mRNA_H-elongata_contig59902.13523.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2209bp|location=Sequence derived from alignment at H-elongata_contig59902:120..2328- (Himanthalia elongata Himel1 dioecious)
GAATTTTTGCGCAAGATTCTGGAATGGGCCAAACGCGAAGCGAAGACCGC
GAGTGTCGATAGTGTCGATAGTGTCGATCCGAGCGAAACGGAAACGGACC
AATGCCCTCCTTCTAGCCCCAAGTGAGTCATTCAGGCATTGGACGCGTCC
ATGGCGCGGCTTACGAACTATTTTAGTTTGATTGTTGTTTATTCTCTATT
CCCGCACCAAGGCATCCGGCAATCGTGTCCAAAATTGGGGAGTGCTTGAA
TGGGTCTGAATCTATTAGTTGTGCGATGGAGCAGAAGTTAGTGCATGTCG
CATCTCGCTTGTTATTTTCTGCGTCGGTGCTGATGTAATATTTTGGCGAG
CTAGCTTCGAAGGCAGGCAAACAGGCAGACGACATACATACGTCAGGGGT
CTCTTCTCGCCGCTAAGCTTCTATCTCTGTGCCACTCGTGTACCCTTCTG
GAAAGTTCGAGGCTTCAGAAAGGGACGAGCGATGTGTCTTCGGCAGGCGA
AGACTCGTGTCAGATCTGCTTCGAGCACGAGCATTCGACGGCCATGTTGC
CATGCGGGCACGGAGGCGTCTGCTGGGATTGCGGACTCCAGGTTTTTGCT
CTCACGGAGGAATGCCCCATGTGCCGAACGAAGATCGAGTTGGTGAGACA
ACGCGTTTATGAAGTTTTGGCAGTTGACAACACAAGGTGGACTTGAAAGC
TTGCGTGTGTCTCGAGTATTATTTGCTCAACAACGCGCACCATTGATCCT
CGTTCCGTTCCGTGCCGTGCCCCCCTCATCCCAACCCTACTGGGACGCGA
TCGACAGCTCGTCCGTCTTGACAGCAGTTCTCGCCGGATCGAGGGAGAGG
AACAGTTCGTCTCGGTCATCTCTTCGTAAGGGGTTTCCGTCGCTTTTGAC
TCACAACCACCTCGCGGGTGCAGTTTGATTTATTATACTGAAGCACGCGC
TTGGAGAATATAAGACGCACGAGGATACCAGGGGTTCTGTAATTTTTGCG
TATTTTTCTTATGAATAGTAAGGTTCGTTGCTGAAATGCTGGGCACAGGA
GCCCCTCTGCCCGCCATTGCTAACCCTATAAATTAGGATTACATTATTAG
AGGTCGTGGAACACCCCGGGGCGAAATGCTTTCTGTAATTTCACCCGACG
CCCGCCCGCGCCCCCCTCCTTTTTTTTTAGCGCTTCACGTTTCATACCGG
TTAAGCCTCTGTTGTGGTTGAAGATAGCTAAGTGCAAAAATACTGGCAGC
AAGGGTTGAAAGGTCGTAATCTTCGTGCATTCGGCTAGATTGTCTTCCTT
TAAATAGCGTCGCCTGACAGTGTTGTGGTAGCGTTTAGACTCGAAAGGGA
CGGCTATTTGTGGGTACCAGGCTCTCCTCACACCCTGAGGTGGCGGGTTT
GCTGCTAAACACGTAAAAACATTGTTAATATCTCGACGGCTCGGTGAAGT
AGTCGGTCGCTAACATTTGATACCTTCCTTAAGGGAGTGTGCTGCACAAG
GGTGGGTTCTTTTTTCGACTTGATTTGGCCTTGGCGGTTGTCTTTCCGTT
CTCCTATTCGCTCGAGACTCAAACTGTAAGCTGCTTCACGATTTGGAAGA
AATAGCGTACAAACTGGTAGCGCTTTCACGTTATATTAATATATATTAGC
GTTGTGGTATTACTGGTATTGATGGTATTACTGGTATTGATGGTATTGAT
GGTATTACTGGTATTGATGGTATTACTGGTATTGATGGTATTACTGGTAT
TACTGGCCACCCAAAGCTAGCCGCACTGCCCGTGTATGTGTGTGTCGTTG
GTGATCCCGCGTGTTGTTTACTCAGCATAGGGGGAACTTATGCAGAACAG
GGACCAGGGTAGTCATATATTTTTATTTTTAAAGTAAATGTATAGATAAG
GCAAAAACCCCATCTCTAATGTTAATCCCCTCCCCACACCTTCAACATAT
AGTCGAAGGTCTAACAGCTGAGGTATGCAAAATTGGAGTACGTCCCGTCC
CCCGTCCCGTCCCCCGGAAAAACGATGGTTTTTGCTGTTTATAGCGATTT
CAAGGTCTGAATTAATGAAATCTAGCTTTCGTATGATTGATTGATTGAAT
TATCACATAAGATGATGTCAAAATCCAGCCCGTGGTCACAAGGTTGAAAA
AACCCCCACCATCCGGAAGGAGAAAAACGTTCAAGGTACTCTCCAATACA
AAAGGAAAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig59902:120..2328-

>mRNA_H-elongata_contig59902.13523.1 ID=mRNA_H-elongata_contig59902.13523.1|Name=mRNA_H-elongata_contig59902.13523.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig59902:120..2328- (Himanthalia elongata Himel1 dioecious)
GAATTTTTGCGCAAGATTCTGGAATGGGCCAAACGCGAAGCGAAGACCGC
GAGTGTCGATAGTGTCGATAGTGTCGATCCGAGCGAAACGGAAACGGACC
AATGCCCTCCTTCTAGCCCCAAGAATTTTTGCGCAAGATTCTGGAATGGG
CCAAACGCGAAGCGAAGACCGCGAGTGTCGATAGTGTCGATAGTGTCGAT
CCGAGCGAAACGGAAACGGACCAATGCCCTCCTTCTAGCCCCAATTCGAG
GCTTCAGAAAGGGACGAGCGATGTGTCTTCGGCAGGCGAAGACTCGTGTC
AGATCTGCTTCGAGCACGAGCATTCGACGGCCATGTTGCCATGCGGGCAC
GGAGGCGTCTGCTGGGATTGCGGACTCCAGGTTTTTGCTCTCACGGAGGA
ATGCCCCATGTGCCGAACGAAGATCGAGTTGTTCGAGGCTTCAGAAAGGG
ACGAGCGATGTGTCTTCGGCAGGCGAAGACTCGTGTCAGATCTGCTTCGA
GCACGAGCATTCGACGGCCATGTTGCCATGCGGGCACGGAGGCGTCTGCT
GGGATTGCGGACTCCAGGTTTTTGCTCTCACGGAGGAATGCCCCATGTGC
CGAACGAAGATCGAGTTGCTCGTCCGTCTTGACAGCAGTTCTCGCCGGAT
CGAGGGAGAGGAACAGTTCGTCTCGGTCATCTCTTCGTAACTCGTCCGTC
TTGACAGCAGTTCTCGCCGGATCGAGGGAGAGGAACAGTTCGTCTCGGTC
ATCTCTTCGTAA
back to top