mRNA_H-elongata_contig59867.13515.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59867.13515.1
Unique NamemRNA_H-elongata_contig59867.13515.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59867.13515.1 vs. uniprot
Match: A5GPB8_SYNPW (Phosphoglycerate kinase n=1 Tax=Synechococcus sp. (strain WH7803) TaxID=32051 RepID=A5GPB8_SYNPW)

HSP 1 Score: 48.9 bits (115), Expect = 4.470e-5
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 3 
Query:  321 CLGVCGSMQQVAAVEKAGLSDQMSHISTGGGASLEL 428
            C  + G    VAAVEKAGL+++MSHISTGGGASLEL
Sbjct:   24 CCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLEL 59
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BLAST of mRNA_H-elongata_contig59867.13515.1 vs. uniprot
Match: A0A7S4MSY2_9EUKA (Phosphoglycerate kinase (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MSY2_9EUKA)

HSP 1 Score: 50.1 bits (118), Expect = 4.590e-5
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 3 
Query:  321 CLGVCGSMQQVAAVEKAGLSDQMSHISTGGGASLEL 428
            C+ + G    VAAVE+AGL+D+MSHISTGGGASLEL
Sbjct:   76 CITIIGGGDSVAAVEQAGLADKMSHISTGGGASLEL 111
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BLAST of mRNA_H-elongata_contig59867.13515.1 vs. uniprot
Match: UPI0019F246B9 (Phosphoglycerate kinase n=1 Tax=filamentous cyanobacterium LEGE 11480 TaxID=2777977 RepID=UPI0019F246B9)

HSP 1 Score: 51.6 bits (122), Expect = 7.030e-5
Identity = 27/39 (69.23%), Postives = 29/39 (74.36%), Query Frame = 3 
Query:  312 PTVCLGVCGSMQQVAAVEKAGLSDQMSHISTGGGASLEL 428
            P  C  + G    VAAVEK GL+DQMSHISTGGGASLEL
Sbjct:  347 PKGCTTIIGGGDSVAAVEKVGLADQMSHISTGGGASLEL 385
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BLAST of mRNA_H-elongata_contig59867.13515.1 vs. uniprot
Match: A0A7S0Q943_9EUKA (Phosphoglycerate kinase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q943_9EUKA)

HSP 1 Score: 51.2 bits (121), Expect = 9.840e-5
Identity = 27/38 (71.05%), Postives = 30/38 (78.95%), Query Frame = 3 
Query:  315 TVCLGVCGSMQQVAAVEKAGLSDQMSHISTGGGASLEL 428
            T C  + G    VAAVEKAGL+D+MSHISTGGGASLEL
Sbjct:  401 TGCTTIIGGGDSVAAVEKAGLADKMSHISTGGGASLEL 438
[Close]
BLAST of mRNA_H-elongata_contig59867.13515.1 vs. uniprot
Match: A0A835YTR9_9STRA (Phosphoglycerate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTR9_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 9.840e-5
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 3 
Query:  312 PTVCLGVCGSMQQVAAVEKAGLSDQMSHISTGGGASLEL 428
            P  C+ + G    VAAVEKAGL+++MSHISTGGGASLEL
Sbjct:  400 PKGCITIIGGGDSVAAVEKAGLAEKMSHISTGGGASLEL 438
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59867.13515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A5GPB8_SYNPW4.470e-569.44Phosphoglycerate kinase n=1 Tax=Synechococcus sp. ... [more]
A0A7S4MSY2_9EUKA4.590e-569.44Phosphoglycerate kinase (Fragment) n=1 Tax=Vannell... [more]
UPI0019F246B97.030e-569.23Phosphoglycerate kinase n=1 Tax=filamentous cyanob... [more]
A0A7S0Q943_9EUKA9.840e-571.05Phosphoglycerate kinase n=1 Tax=Coccolithus braaru... [more]
A0A835YTR9_9STRA9.840e-566.67Phosphoglycerate kinase n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59867contigH-elongata_contig59867:2153..2581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size429
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59867.13515.1prot_H-elongata_contig59867.13515.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59867 2232..2576 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930969.7171602-UTR-H-elongata_contig59867:2152..22311622930969.7171602-UTR-H-elongata_contig59867:2152..2231Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59867 2153..2231 +
1691679644.964794-UTR-H-elongata_contig59867:2152..22311691679644.964794-UTR-H-elongata_contig59867:2152..2231Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59867 2153..2231 +
1622930969.7573235-UTR-H-elongata_contig59867:2576..25811622930969.7573235-UTR-H-elongata_contig59867:2576..2581Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59867 2577..2581 +
1691679644.9810402-UTR-H-elongata_contig59867:2576..25811691679644.9810402-UTR-H-elongata_contig59867:2576..2581Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59867 2577..2581 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930969.7340796-CDS-H-elongata_contig59867:2231..25761622930969.7340796-CDS-H-elongata_contig59867:2231..2576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59867 2232..2576 +
1691679644.9728632-CDS-H-elongata_contig59867:2231..25761691679644.9728632-CDS-H-elongata_contig59867:2231..2576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59867 2232..2576 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59867.13515.1

>prot_H-elongata_contig59867.13515.1 ID=prot_H-elongata_contig59867.13515.1|Name=mRNA_H-elongata_contig59867.13515.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MFLFLMKHGAKASHAPARVPPSSQGEHCSIRVEHYPSGVEHCSTRVEHYL
SGVEHCSSRVEQSSSLAEQSSSGVEHSTYGLSGCVWIDATGCGRREGRPQ
RPNVAHLHRGRSEP*
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mRNA from alignment at H-elongata_contig59867:2153..2581+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59867.13515.1 ID=mRNA_H-elongata_contig59867.13515.1|Name=mRNA_H-elongata_contig59867.13515.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=429bp|location=Sequence derived from alignment at H-elongata_contig59867:2153..2581+ (Himanthalia elongata Himel1 dioecious)
CGATGAGAAAACCTAGACTGAAAGAGAAGGCGGTCTTCCACGCACAAGGT
TCTAAGGTAGTAAATGCGGGTGGTAGATTATGTTTCTGTTTCTTATGAAA
CACGGTGCGAAGGCGTCTCACGCTCCAGCGCGCGTTCCTCCTTCCTCTCA
AGGTGAACATTGTTCCATTCGTGTAGAACATTATCCCTCTGGTGTTGAAC
ATTGTTCCACTCGTGTAGAACATTATCTCTCTGGTGTTGAACATTGTTCC
TCTCGTGTTGAACAATCCTCGTCTCTTGCTGAACAATCTTCCTCTGGTGT
TGAACATTCTACCTACGGTCTGTCTGGGTGTGTGTGGATCGATGCAACAG
GTTGCGGCCGTCGAGAAGGCCGGCCTCAGCGACCAAATGTCGCACATCTC
CACCGGGGGCGGAGCGAGCCTTGAGCTGC
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Coding sequence (CDS) from alignment at H-elongata_contig59867:2153..2581+

>mRNA_H-elongata_contig59867.13515.1 ID=mRNA_H-elongata_contig59867.13515.1|Name=mRNA_H-elongata_contig59867.13515.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig59867:2153..2581+ (Himanthalia elongata Himel1 dioecious)
ATGTTTCTGTTTCTTATGAAACACGGTGCGAAGGCGTCTCACGCTCCAGC
GCGCGTTCCTCCTTCCTCTCAAGGTGAACATTGTTCCATTCGTGTAGAAC
ATTATCCCTCTGGTGTTGAACATTGTTCCACTCGTGTAGAACATTATCTC
TCTGGTGTTGAACATTGTTCCTCTCGTGTTGAACAATCCTCGTCTCTTGC
TGAACAATCTTCCTCTGGTGTTGAACATTCTACCTACGGTCTGTCTGGGT
GTGTGTGGATCGATGCAACAGGTTGCGGCCGTCGAGAAGGCCGGCCTCAG
CGACCAAATGTCGCACATCTCCACCGGGGGCGGAGCGAGCCTTGAATGTT
TCTGTTTCTTATGAAACACGGTGCGAAGGCGTCTCACGCTCCAGCGCGCG
TTCCTCCTTCCTCTCAAGGTGAACATTGTTCCATTCGTGTAGAACATTAT
CCCTCTGGTGTTGAACATTGTTCCACTCGTGTAGAACATTATCTCTCTGG
TGTTGAACATTGTTCCTCTCGTGTTGAACAATCCTCGTCTCTTGCTGAAC
AATCTTCCTCTGGTGTTGAACATTCTACCTACGGTCTGTCTGGGTGTGTG
TGGATCGATGCAACAGGTTGCGGCCGTCGAGAAGGCCGGCCTCAGCGACC
AAATGTCGCACATCTCCACCGGGGGCGGAGCGAGCCTTGA
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