mRNA_H-elongata_contig59851.13506.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig59851.13506.1 vs. uniprot
Match: D7FT45_ECTSI (Spermidine/spermine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT45_ECTSI) HSP 1 Score: 138 bits (347), Expect = 1.140e-38 Identity = 66/76 (86.84%), Postives = 70/76 (92.11%), Query Frame = 1
Query: 1 QVIEMTPFGKTLVLDGMIQSAQLDEFIYHESLVHPAMLAHSDPKRVYIGGGGELATAREVLRHKSVESCVMVDLDE 228
QV+E PFGKTLVLDG QSAQLDEFIYHE+LVHPAMLAH +PKRVYIGGGGELATAREVLRHKSVE CVMVDLD+
Sbjct: 12 QVVETAPFGKTLVLDGKTQSAQLDEFIYHETLVHPAMLAHPNPKRVYIGGGGELATAREVLRHKSVEKCVMVDLDK 87
BLAST of mRNA_H-elongata_contig59851.13506.1 vs. uniprot
Match: A0A813BDH4_9DINO (SpeE protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BDH4_9DINO) HSP 1 Score: 122 bits (306), Expect = 2.920e-32 Identity = 57/75 (76.00%), Postives = 62/75 (82.67%), Query Frame = 1
Query: 1 QVIEMTPFGKTLVLDGMIQSAQLDEFIYHESLVHPAMLAHSDPKRVYIGGGGELATAREVLRHKSVESCVMVDLD 225
Q++ PFGKTLVLDG QSAQ DEF+YHESLVHPAMLAH K V+IGGGGELATAREVLRH VE CVMVD+D
Sbjct: 54 QIVHTAPFGKTLVLDGKTQSAQADEFVYHESLVHPAMLAHGKAKSVFIGGGGELATAREVLRHTGVEKCVMVDID 128
BLAST of mRNA_H-elongata_contig59851.13506.1 vs. uniprot
Match: A0A7S1CPT3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CPT3_9STRA) HSP 1 Score: 122 bits (306), Expect = 4.070e-32 Identity = 55/76 (72.37%), Postives = 65/76 (85.53%), Query Frame = 1
Query: 1 QVIEMTPFGKTLVLDGMIQSAQLDEFIYHESLVHPAMLAHSDPKRVYIGGGGELATAREVLRHKSVESCVMVDLDE 228
Q+IE PFGKTLVLDG QSA DE++YHESLVHPAMLAH++PK V++GGGGE AT RE+LRH SVE CVMVD+D+
Sbjct: 45 QIIETGPFGKTLVLDGKTQSALADEYVYHESLVHPAMLAHANPKSVFVGGGGEFATTREILRHPSVEKCVMVDIDK 120
BLAST of mRNA_H-elongata_contig59851.13506.1 vs. uniprot
Match: A0A7S4B7S3_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B7S3_CHRCT) HSP 1 Score: 117 bits (293), Expect = 4.530e-32 Identity = 51/75 (68.00%), Postives = 66/75 (88.00%), Query Frame = 1
Query: 4 VIEMTPFGKTLVLDGMIQSAQLDEFIYHESLVHPAMLAHSDPKRVYIGGGGELATAREVLRHKSVESCVMVDLDE 228
++E+ PFG+ L++DG+IQS+Q DEF+YHE LVHPA+LAH +PK VYIGGGGE +TAREVLRH +VE CVMVD+D+
Sbjct: 46 LVELEPFGRVLMIDGLIQSSQSDEFVYHECLVHPALLAHPNPKSVYIGGGGEGSTAREVLRHSTVERCVMVDIDK 120
BLAST of mRNA_H-elongata_contig59851.13506.1 vs. uniprot
Match: A0A836C836_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C836_9STRA) HSP 1 Score: 122 bits (306), Expect = 6.760e-32 Identity = 57/76 (75.00%), Postives = 66/76 (86.84%), Query Frame = 1
Query: 1 QVIEMTPFGKTLVLDGMIQSAQLDEFIYHESLVHPAMLAHSDPKRVYIGGGGELATAREVLRHKSVESCVMVDLDE 228
QVI+ PFGKTLVLDG QSA DEF+YHE+LVHPAML H +PKRV+IGGGGE ATARE+LRH+SVE C+MVDLD+
Sbjct: 77 QVIDCAPFGKTLVLDGKSQSAAGDEFVYHEALVHPAMLLHGNPKRVFIGGGGEGATAREMLRHRSVEKCIMVDLDK 152
BLAST of mRNA_H-elongata_contig59851.13506.1 vs. uniprot
Match: A0A2R5G8N6_9STRA (Spermidine synthase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G8N6_9STRA) HSP 1 Score: 123 bits (308), Expect = 6.840e-32 Identity = 57/76 (75.00%), Postives = 64/76 (84.21%), Query Frame = 1
Query: 1 QVIEMTPFGKTLVLDGMIQSAQLDEFIYHESLVHPAMLAHSDPKRVYIGGGGELATAREVLRHKSVESCVMVDLDE 228
QVIE T FG+TLV+DG QSA+ DE IYHESLVHPAML H PK+V+IGGGGE ATAREVLRH SVE CVM+D+DE
Sbjct: 121 QVIETTQFGRTLVMDGQTQSAEADEHIYHESLVHPAMLLHKSPKKVFIGGGGEFATAREVLRHSSVERCVMIDIDE 196
BLAST of mRNA_H-elongata_contig59851.13506.1 vs. uniprot
Match: A0A7S3JWK0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JWK0_9STRA) HSP 1 Score: 121 bits (304), Expect = 6.910e-32 Identity = 60/75 (80.00%), Postives = 63/75 (84.00%), Query Frame = 1
Query: 1 QVIEMTPFGKTLVLDGMIQSAQLDEFIYHESLVHPAMLAHSDPKRVYIGGGGELATAREVLRHKSVESCVMVDLD 225
Q+IE PFGKTLVLDG QSA DEF+YHESLVH AML H DPKRVYIGGGGELATAREVLRH SV+ VMVDLD
Sbjct: 46 QIIETKPFGKTLVLDGKTQSALGDEFVYHESLVHAAMLWHDDPKRVYIGGGGELATAREVLRHASVQEVVMVDLD 120
BLAST of mRNA_H-elongata_contig59851.13506.1 vs. uniprot
Match: R1EEV0_EMIHU (PABS domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EEV0_EMIHU) HSP 1 Score: 120 bits (301), Expect = 2.110e-31 Identity = 52/74 (70.27%), Postives = 67/74 (90.54%), Query Frame = 1
Query: 4 VIEMTPFGKTLVLDGMIQSAQLDEFIYHESLVHPAMLAHSDPKRVYIGGGGELATAREVLRHKSVESCVMVDLD 225
++++ PFG+TL++DG+IQS Q DEF+YHE+LVHPA+LAH +P+ VYIGGGGE +TAREVLRHKSVE CVMVD+D
Sbjct: 35 LVDLEPFGRTLMIDGLIQSTQCDEFVYHEALVHPALLAHPNPRSVYIGGGGEGSTAREVLRHKSVERCVMVDID 108
BLAST of mRNA_H-elongata_contig59851.13506.1 vs. uniprot
Match: A0A0P1AJP4_PLAHL (Spermidine synthase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJP4_PLAHL) HSP 1 Score: 120 bits (301), Expect = 2.590e-31 Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 1
Query: 1 QVIEMTPFGKTLVLDGMIQSAQLDEFIYHESLVHPAMLAHSDPKRVYIGGGGELATAREVLRHKSVESCVMVDLDE 228
Q+IE FGKTLVLDG QSA+LDE IYHE+LVHPAMLAH +PK V+IGGGGE ATAREVL+HKSVE VMVD+DE
Sbjct: 54 QIIETYSFGKTLVLDGKTQSAKLDEAIYHETLVHPAMLAHKNPKTVFIGGGGEFATAREVLKHKSVEKVVMVDIDE 129
BLAST of mRNA_H-elongata_contig59851.13506.1 vs. uniprot
Match: A0A5A8EFJ0_CAFRO (PABS domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EFJ0_CAFRO) HSP 1 Score: 122 bits (305), Expect = 2.630e-31 Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 1
Query: 1 QVIEMTPFGKTLVLDGMIQSAQLDEFIYHESLVHPAMLAHSDPKRVYIGGGGELATAREVLRHKSVESCVMVDLDE 228
Q++E PFGKTLVLDG QSA+ DE +YHESLVHPA+L H +PK VYIGGGGE ATARE+LRHK+VE CVMVD+DE
Sbjct: 36 QIVETAPFGKTLVLDGKSQSAKFDEPVYHESLVHPALLMHPNPKSVYIGGGGEGATAREILRHKTVEKCVMVDIDE 111 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59851.13506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig59851.13506.1 >prot_H-elongata_contig59851.13506.1 ID=prot_H-elongata_contig59851.13506.1|Name=mRNA_H-elongata_contig59851.13506.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp MTPFGKTLVLDGMIQSAQLDEFIYHESLVHPAMLAHSDPKRVYIGGGGELback to top mRNA from alignment at H-elongata_contig59851:2804..3608+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig59851.13506.1 ID=mRNA_H-elongata_contig59851.13506.1|Name=mRNA_H-elongata_contig59851.13506.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=805bp|location=Sequence derived from alignment at H-elongata_contig59851:2804..3608+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig59851:2804..3608+ >mRNA_H-elongata_contig59851.13506.1 ID=mRNA_H-elongata_contig59851.13506.1|Name=mRNA_H-elongata_contig59851.13506.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig59851:2804..3608+ (Himanthalia elongata Himel1 dioecious)back to top |