mRNA_H-elongata_contig59695.13486.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59695.13486.1
Unique NamemRNA_H-elongata_contig59695.13486.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59695.13486.1 vs. uniprot
Match: A0A6H5JTU3_9PHAE (tRNA-intron lyase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTU3_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 1.020e-61
Identity = 144/342 (42.11%), Postives = 176/342 (51.46%), Query Frame = 1 
Query:   25 LPSAPGTKNKEARPRIHVEGGRAFVYDASSAALLLSEHRIWANPVGVRRAGRKSSEHNFPCVLTQEQTTLILRRNFADVYAGFLPGVDERIPAADATPNVTGVTFDDGGGAALAAPCDAAGSLSSVESVKTTREGLE--WSYPRTLAEKKSMAVFEDLWAKGLCVAVGSNYGADYVVYNGPPTECHSTAAVLVSRGSNDELSPAEVSAFARVQQAAAKMAVVATASV------PAKAKAATLTTSAC--------------DSGLATIENEPRSEDGLVEENS--------------------------------------------VRYVTLRFHSVSSRM 852
            L +    +    RP++HV  GR  VYD +SAA LLSEHRIWA PVGVRRA  KS EH+FPCVL+ EQ TL+LRR  ADV+        E          +     DDG G A     DA   +++ +        L+  W +P T    KS AVFEDLWAKGLC A GSNY AD+VVYNGPPTE HS AAV+VSRG+NDELSPAE+S FARVQQA  K AV+ATA +      P   +A TL ++A                +G+    + PR  +G  E  S                                            VRY+TL+FHSVSSR+
Sbjct:    6 LTAGAAARGSGRRPQVHVVDGRVLVYDPASAATLLSEHRIWATPVGVRRARNKSPEHSFPCVLSPEQATLVLRRRLADVFYPRHSSASET--GCHGHETLEERHSDDGDGGAEEQE-DANVPMTTKKVCHDPPRSLDSKWRFPETAVGTKSTAVFEDLWAKGLCPASGSNYAADFVVYNGPPTERHSIAAVIVSRGANDELSPAELSGFARVQQAVGKRAVIATAPLATNDTSPMVVEANTLASAAVATAAVVAPRGSEGKPTGVEGRTSTPRRHEGGQETASGTVLGTASEKLPTQAPAAANAVAXXXXXXXXXXXXXXXTPANEGVRYITLQFHSVSSRV 344
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BLAST of mRNA_H-elongata_contig59695.13486.1 vs. uniprot
Match: D8LBR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR0_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.570e-9
Identity = 29/49 (59.18%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:   25 LPSAPGTKNKEARPRIHVEGGRAFVYDASSAALLLSEHRIWANPVGVRR 171
            L +    +    RPR+HV  GR  VYD +SAA LLSEHRIWA PVGVRR
Sbjct:    2 LTAGAAARGSGRRPRVHVVDGRVLVYDPASAATLLSEHRIWATPVGVRR 50
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BLAST of mRNA_H-elongata_contig59695.13486.1 vs. uniprot
Match: A0A1Y2GZU4_9FUNG (tRNA-splicing endonuclease subunit Sen34 n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GZU4_9FUNG)

HSP 1 Score: 57.4 bits (137), Expect = 1.060e-5
Identity = 55/238 (23.11%), Postives = 93/238 (39.08%), Query Frame = 1 
Query:   58 ARPRIHVEGGRAFVYDASSAALLLSEHRIWANPVG-VRRAGRKSSEHNFPCVLTQEQTTLILRRNFADVYAGFLPGVDER--IPAADATPNVTGVTFDDGGGAALAAPCDAAGSLSSV-----------------------------------ESVKTTREGLEWSYPRTLAEKKSMAVFEDLW-AKGLCVAVGSNYGADYVVYNGPPTECHSTAAVLVSRGSNDELSPAEVSAFARV 654
            ++PRIH+ G  A V+D      L   +RI  +  G + R+  ++     P  L  E+  ++  R+  D+       VDE      +D+ P   G    +     L AP  AA +L S                                    + +  T   + W+YP T  +++ +A+F  LW      +A G  +G DY++Y   P  CH+     V + SN  L   +++  AR+
Sbjct:   10 SKPRIHLVGSEALVWDIQDVRKLRQTYRIVGSLTGSLARSPMQNIFQGLPLRLLPEEVYVLRSRDLVDL-------VDENRSYNVSDSAPRPDGFQASN-----LIAP--AANNLMSATRSTXXXXXXXXXXXXASECAHLYLHTLSDCLPYYKPISPTEMSVSWTYPNTTRQQQKVAIFMHLWETHKFFLAPGMKFGGDYLLYKNDPLVCHADLIASVVQCSNQSLPLVDLATHARL 233
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BLAST of mRNA_H-elongata_contig59695.13486.1 vs. uniprot
Match: A0A059LSC9_9CHLO (tRNA-intron lyase n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LSC9_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 2.400e-5
Identity = 32/82 (39.02%), Postives = 50/82 (60.98%), Query Frame = 1 
Query:  340 DDGGGA--ALAAPCDAAGSLSSVESVKTTREGLEWSYPRTLAEKKSMAVFEDLWAKGLCVAVGSNYGADYVVYNGPPTECHS 579
            +DGG A  + +AP  +A + S+   V       +W+YPRT A++  +AVF DL A+G  +  GS +GAD+++Y G PT  H+
Sbjct:  110 EDGGAAPTSKSAPEPSAAAASAASPV-------DWTYPRTAAQRARLAVFVDLHARGYRLTGGSKFGADFLLYPGDPTLFHA 184
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59695.13486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JTU3_9PHAE1.020e-6142.11tRNA-intron lyase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
D8LBR0_ECTSI1.570e-959.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Y2GZU4_9FUNG1.060e-523.11tRNA-splicing endonuclease subunit Sen34 n=1 Tax=L... [more]
A0A059LSC9_9CHLO2.400e-539.02tRNA-intron lyase n=1 Tax=Helicosporidium sp. ATCC... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59695contigH-elongata_contig59695:96..2530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontRNA endonuclease-like domain
Ec32 orthologEc-27_003060.1
Exons4
Model size997
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59695.13486.1prot_H-elongata_contig59695.13486.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59695 235..1066 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930966.6048055-UTR-H-elongata_contig59695:95..2341622930966.6048055-UTR-H-elongata_contig59695:95..234Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59695 96..234 -
1691679643.6192636-UTR-H-elongata_contig59695:95..2341691679643.6192636-UTR-H-elongata_contig59695:95..234Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59695 96..234 -
1622930966.661272-UTR-H-elongata_contig59695:1066..11291622930966.661272-UTR-H-elongata_contig59695:1066..1129Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59695 1067..1129 -
1691679643.6429975-UTR-H-elongata_contig59695:1066..11291691679643.6429975-UTR-H-elongata_contig59695:1066..1129Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59695 1067..1129 -
1622930966.6755836-UTR-H-elongata_contig59695:1559..18001622930966.6755836-UTR-H-elongata_contig59695:1559..1800Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59695 1560..1800 -
1691679643.6508412-UTR-H-elongata_contig59695:1559..18001691679643.6508412-UTR-H-elongata_contig59695:1559..1800Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59695 1560..1800 -
1622930966.6932783-UTR-H-elongata_contig59695:2363..25301622930966.6932783-UTR-H-elongata_contig59695:2363..2530Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59695 2364..2530 -
1691679643.6585903-UTR-H-elongata_contig59695:2363..25301691679643.6585903-UTR-H-elongata_contig59695:2363..2530Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59695 2364..2530 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930966.6205726-CDS-H-elongata_contig59695:234..5361622930966.6205726-CDS-H-elongata_contig59695:234..536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59695 235..536 -
1691679643.6272597-CDS-H-elongata_contig59695:234..5361691679643.6272597-CDS-H-elongata_contig59695:234..536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59695 235..536 -
1622930966.6352527-CDS-H-elongata_contig59695:981..10661622930966.6352527-CDS-H-elongata_contig59695:981..1066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59695 982..1066 -
1691679643.6352766-CDS-H-elongata_contig59695:981..10661691679643.6352766-CDS-H-elongata_contig59695:981..1066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59695 982..1066 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59695.13486.1

>prot_H-elongata_contig59695.13486.1 ID=prot_H-elongata_contig59695.13486.1|Name=mRNA_H-elongata_contig59695.13486.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
MAVFEDLWAKGLCVAVGSNYGADYVVYNGPPTECHSTAAVLVSRGSNDEL
SPAEVSAFARVQQAAAKMAVVATASVPAKAKAATLTTSACDSGLATIENE
PRSEDGLVEENSVRYVTLRFHSVSSRMS*
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mRNA from alignment at H-elongata_contig59695:96..2530-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59695.13486.1 ID=mRNA_H-elongata_contig59695.13486.1|Name=mRNA_H-elongata_contig59695.13486.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2435bp|location=Sequence derived from alignment at H-elongata_contig59695:96..2530- (Himanthalia elongata Himel1 dioecious)
GCGCAAGATGTACGACCTCGTCCACTGCCTTCGGCACCAGGAACGAAGAA
CAAGGAAGCTCGACCGCGCATACATGTGGAGGGCGGGAGGGCCTTCGTCT
ACGATGCGTCCAGCGCGGCCTTGCTCCTCTCGGAGCACCGCATTTGGGCA
AACCCAGTCGGCGTAAGGCAAGCCAGCCTCAGAGAACCGCCCAAACACAA
ACTTACACACAAACAAACGGTACTGGTCTGCGATTTCCGCGATAGGTATA
CCTTCAAAAGCTCGTGTTCCCAGAGCAAGTGTGAGTTACCCCGTTTGTAT
CGTAGAGCTACAGCTCAAGACAAGCTTCTCGACGGTACGGATGTCTTTCA
AACACGGGGGGGGGTAGGGAGGTGTAGAGGGGGAGGGGCGGGGTTCTCCC
AGTGGCATCTCCACTTCTTACAATCCGTCGGATAGGCTGCATTTTACGCT
TTCTTCTAGTCCGGGAATTTCTACGATTCCCCGCAACAGACACGCTATTC
GGAAGCGAACCCCCCCCCCTTCGCTTCGTGACAACGCTTGTATCTTGTCG
CCACTTCAGAGTAGCGTAGGTATCACATCGCGGATAGCGATGGACCAACC
ATCGATGTCTTCGGTCCAGCTACCGTACGAGTACGGTAATGTCCTGAAAC
TGCCAAGTGGCCATCATCGCGGGGGCATGCTCCCTCACGTCTCGTCATCG
CCGTCGCCGTTGAACTTTTTACTTGTGCAGGCGCGCCGGCAGGAAATCAT
CTGAGCACAACTTTCCGTGTGTTCTGACCCAAGAGCAGACGACTCTGATC
CTCCGGCGAAACTTCGCCGACGTTTACGCAGGGTTTCTACCCGGCGTGGA
TGAAAGAATCCCCGCCGCAGACGCCACGCCGAACGTCACGGGGGTCACGT
TCGACGACGGCGGGGGCGCAGCACTGGCGGCTCCCTGTGATGCCGCCGGG
AGCCTGTCGTCAGTTGAATCGGTGCGAGTGAAGGGGTTGAATGCCGTTTG
TCGAAGGCGTGCCATAGCGCTCAGCTTTCCTTGCCATACGGTTTGCTTCC
GCGAGTTGACCACGTGATCTGTAGCGTAAACCTTCCACGTAACTACACAC
GCCGTCGACGGTTACCCAGCCCGAGGAAATCGTGTGCCTGTCCCGTGGAA
ACGCCTGTATTCGAGATGAGGGGATGTGTGGGGGGGGGGGGGGGGGAATC
TTGACGGTTGATAAGTGCTTCAGGCATCTTTAGTGGGACACTCGGTGGGG
AACGCATGCGAGTAGGTTGTGCAGCATACCTCGGGCCCCGCGACGGTAGG
CGTCGTTTCGCGTAGGTGCGGATGGTGTGCTTCAGGCAAGGATCTACTGT
AGTTCTTGCCCATATGACCGTGCCGTGTATGCCGGATGAACGCGCTATAA
GGTGAAAACCACCCGGGAGGGGCTAGAGTGGAGCTATCCTCGAACACTCG
CCGAGAAGAAGTCGATGGCCGTTTTCGAAGACTTGTGGGCCAAGGGCCTG
TGCGTCGCAGTTGGCAGCAATTATGGTGCAGACTACGTCGTCTACAATGG
TGAACTTGTCCACGACAATCCGTCTCCGCTCGATCAATTGATTGGTTTTT
GTCCTGTTGACATCTTAAATTCTGAGAGGTTCCAAGGTGGCGAGTCGTGG
CGTGAGAGGTGTGCCCCGCGTTTCCATGGCGGCGGTCGTTGCGGATCTAA
AGAAATCGCCGGCTCGGCGTTGCCAGTTGCGTGACACGATGGAGGCGCGT
TATCCCGCGAATATGGGACAGTTGTGGGTATGCTGAATTGAAGTTATGAC
CTTTATCGGCTTTAGGCGTTTTTTCCCCTATTGAAAAAATGTCGTAGACA
AGAGCGCTCCCCAGCCCTCTATTCCCTAGGCGAGCTCTTTGTATCCCCCC
CACCCCCCGCATGAAACGAGATGACCAACCACGACATCGTTGCCGATTCA
CATACTTCCTGGCTGCTTCTCTTTCGGCGATCCTTCGCGTATAGGCCCTC
CCACAGAATGCCACTCCACAGCCGCTGTACTTGTGAGTCGAGGCTCGAAC
GACGAGCTTTCTCCGGCGGAGGTGTCAGCATTTGCTCGAGTACAACAAGC
AGCGGCTAAGATGGCGGTCGTCGCGACGGCATCGGTTCCTGCCAAGGCAA
AGGCCGCGACTCTGACCACATCAGCCTGCGACTCCGGCCTAGCCACCATC
GAAAACGAGCCACGTTCGGAAGACGGGTTAGTGGAAGAGAACAGCGTTCG
GTACGTTACACTGCGGTTCCACTCCGTGAGCAGTAGGATGTCGTGATAAG
TGATACCTAAGTGATAGCGATTGTGAAAATGAAAACGTAACTAGTGTATG
CAGGTCTCCCGTTCATCTTGAAGGCCTCGATTCGAGCATCGATTTGAGCA
AGGTTCAAAGTAAACCGTTTGTAAGGTACTCTACC
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Coding sequence (CDS) from alignment at H-elongata_contig59695:96..2530-

>mRNA_H-elongata_contig59695.13486.1 ID=mRNA_H-elongata_contig59695.13486.1|Name=mRNA_H-elongata_contig59695.13486.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig59695:96..2530- (Himanthalia elongata Himel1 dioecious)
ATGGCCGTTTTCGAAGACTTGTGGGCCAAGGGCCTGTGCGTCGCAGTTGG
CAGCAATTATGGTGCAGACTACGTCGTCTACAATGATGGCCGTTTTCGAA
GACTTGTGGGCCAAGGGCCTGTGCGTCGCAGTTGGCAGCAATTATGGTGC
AGACTACGTCGTCTACAATGGCCCTCCCACAGAATGCCACTCCACAGCCG
CTGTACTTGTGAGTCGAGGCTCGAACGACGAGCTTTCTCCGGCGGAGGTG
TCAGCATTTGCTCGAGTACAACAAGCAGCGGCTAAGATGGCGGTCGTCGC
GACGGCATCGGTTCCTGCCAAGGCAAAGGCCGCGACTCTGACCACATCAG
CCTGCGACTCCGGCCTAGCCACCATCGAAAACGAGCCACGTTCGGAAGAC
GGGTTAGTGGAAGAGAACAGCGTTCGGTACGTTACACTGCGGTTCCACTC
CGTGAGCAGTAGGATGTCGTGAGCCCTCCCACAGAATGCCACTCCACAGC
CGCTGTACTTGTGAGTCGAGGCTCGAACGACGAGCTTTCTCCGGCGGAGG
TGTCAGCATTTGCTCGAGTACAACAAGCAGCGGCTAAGATGGCGGTCGTC
GCGACGGCATCGGTTCCTGCCAAGGCAAAGGCCGCGACTCTGACCACATC
AGCCTGCGACTCCGGCCTAGCCACCATCGAAAACGAGCCACGTTCGGAAG
ACGGGTTAGTGGAAGAGAACAGCGTTCGGTACGTTACACTGCGGTTCCAC
TCCGTGAGCAGTAGGATGTCGTGA
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