mRNA_H-elongata_contig59695.13487.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59695.13487.1
Unique NamemRNA_H-elongata_contig59695.13487.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig59695.13487.1 vs. uniprot
Match: A0A6H5JTU3_9PHAE (tRNA-intron lyase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTU3_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.040e-22
Identity = 48/80 (60.00%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:   25 LPSAPGTKNKEARPRIHVEGGRAFVYDASSAALLLSEHRIWANPVGVRRAGRKSSEHNFPCVLTQEQTTLILRRNFADVY 264
            L +    +    RP++HV  GR  VYD +SAA LLSEHRIWA PVGVRRA  KS EH+FPCVL+ EQ TL+LRR  ADV+
Sbjct:    6 LTAGAAARGSGRRPQVHVVDGRVLVYDPASAATLLSEHRIWATPVGVRRARNKSPEHSFPCVLSPEQATLVLRRRLADVF 85
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BLAST of mRNA_H-elongata_contig59695.13487.1 vs. uniprot
Match: D8LBR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR0_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 2.970e-10
Identity = 29/49 (59.18%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:   25 LPSAPGTKNKEARPRIHVEGGRAFVYDASSAALLLSEHRIWANPVGVRR 171
            L +    +    RPR+HV  GR  VYD +SAA LLSEHRIWA PVGVRR
Sbjct:    2 LTAGAAARGSGRRPRVHVVDGRVLVYDPASAATLLSEHRIWATPVGVRR 50
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59695.13487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTU3_9PHAE1.040e-2260.00tRNA-intron lyase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
D8LBR0_ECTSI2.970e-1059.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59695contigH-elongata_contig59695:1383..2530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size585
Cds size504
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59695.13487.1prot_H-elongata_contig59695.13487.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59695 1464..2530 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930966.535616-UTR-H-elongata_contig59695:1382..14631622930966.535616-UTR-H-elongata_contig59695:1382..1463Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59695 1383..1463 -
1691679643.592279-UTR-H-elongata_contig59695:1382..14631691679643.592279-UTR-H-elongata_contig59695:1382..1463Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59695 1383..1463 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930966.5481024-CDS-H-elongata_contig59695:1463..18001622930966.5481024-CDS-H-elongata_contig59695:1463..1800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59695 1464..1800 -
1691679643.6029346-CDS-H-elongata_contig59695:1463..18001691679643.6029346-CDS-H-elongata_contig59695:1463..1800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59695 1464..1800 -
1622930966.5646167-CDS-H-elongata_contig59695:2363..25301622930966.5646167-CDS-H-elongata_contig59695:2363..2530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59695 2364..2530 -
1691679643.6109009-CDS-H-elongata_contig59695:2363..25301691679643.6109009-CDS-H-elongata_contig59695:2363..2530Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59695 2364..2530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59695.13487.1

>prot_H-elongata_contig59695.13487.1 ID=prot_H-elongata_contig59695.13487.1|Name=mRNA_H-elongata_contig59695.13487.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp
AQDVRPRPLPSAPGTKNKEARPRIHVEGGRAFVYDASSAALLLSEHRIWA
NPVGVRRAGRKSSEHNFPCVLTQEQTTLILRRNFADVYAGFLPGVDERIP
AADATPNVTGVTFDDGGGAALAAPCDAAGSLSSVESVRVKGLNAVCRRRA
IALSFPCHTVCFRELTT*
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mRNA from alignment at H-elongata_contig59695:1383..2530-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59695.13487.1 ID=mRNA_H-elongata_contig59695.13487.1|Name=mRNA_H-elongata_contig59695.13487.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1148bp|location=Sequence derived from alignment at H-elongata_contig59695:1383..2530- (Himanthalia elongata Himel1 dioecious)
GCGCAAGATGTACGACCTCGTCCACTGCCTTCGGCACCAGGAACGAAGAA
CAAGGAAGCTCGACCGCGCATACATGTGGAGGGCGGGAGGGCCTTCGTCT
ACGATGCGTCCAGCGCGGCCTTGCTCCTCTCGGAGCACCGCATTTGGGCA
AACCCAGTCGGCGTAAGGCAAGCCAGCCTCAGAGAACCGCCCAAACACAA
ACTTACACACAAACAAACGGTACTGGTCTGCGATTTCCGCGATAGGTATA
CCTTCAAAAGCTCGTGTTCCCAGAGCAAGTGTGAGTTACCCCGTTTGTAT
CGTAGAGCTACAGCTCAAGACAAGCTTCTCGACGGTACGGATGTCTTTCA
AACACGGGGGGGGGTAGGGAGGTGTAGAGGGGGAGGGGCGGGGTTCTCCC
AGTGGCATCTCCACTTCTTACAATCCGTCGGATAGGCTGCATTTTACGCT
TTCTTCTAGTCCGGGAATTTCTACGATTCCCCGCAACAGACACGCTATTC
GGAAGCGAACCCCCCCCCCTTCGCTTCGTGACAACGCTTGTATCTTGTCG
CCACTTCAGAGTAGCGTAGGTATCACATCGCGGATAGCGATGGACCAACC
ATCGATGTCTTCGGTCCAGCTACCGTACGAGTACGGTAATGTCCTGAAAC
TGCCAAGTGGCCATCATCGCGGGGGCATGCTCCCTCACGTCTCGTCATCG
CCGTCGCCGTTGAACTTTTTACTTGTGCAGGCGCGCCGGCAGGAAATCAT
CTGAGCACAACTTTCCGTGTGTTCTGACCCAAGAGCAGACGACTCTGATC
CTCCGGCGAAACTTCGCCGACGTTTACGCAGGGTTTCTACCCGGCGTGGA
TGAAAGAATCCCCGCCGCAGACGCCACGCCGAACGTCACGGGGGTCACGT
TCGACGACGGCGGGGGCGCAGCACTGGCGGCTCCCTGTGATGCCGCCGGG
AGCCTGTCGTCAGTTGAATCGGTGCGAGTGAAGGGGTTGAATGCCGTTTG
TCGAAGGCGTGCCATAGCGCTCAGCTTTCCTTGCCATACGGTTTGCTTCC
GCGAGTTGACCACGTGATCTGTAGCGTAAACCTTCCACGTAACTACACAC
GCCGTCGACGGTTACCCAGCCCGAGGAAATCGTGTGCCTGTCCCGTGG
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Coding sequence (CDS) from alignment at H-elongata_contig59695:1383..2530-

>mRNA_H-elongata_contig59695.13487.1 ID=mRNA_H-elongata_contig59695.13487.1|Name=mRNA_H-elongata_contig59695.13487.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig59695:1383..2530- (Himanthalia elongata Himel1 dioecious)
GCGCAAGATGTACGACCTCGTCCACTGCCTTCGGCACCAGGAACGAAGAA
CAAGGAAGCTCGACCGCGCATACATGTGGAGGGCGGGAGGGCCTTCGTCT
ACGATGCGTCCAGCGCGGCCTTGCTCCTCTCGGAGCACCGCATTTGGGCA
AACCCAGTCGGCGTAAGGCGCAAGATGTACGACCTCGTCCACTGCCTTCG
GCACCAGGAACGAAGAACAAGGAAGCTCGACCGCGCATACATGTGGAGGG
CGGGAGGGCCTTCGTCTACGATGCGTCCAGCGCGGCCTTGCTCCTCTCGG
AGCACCGCATTTGGGCAAACCCAGTCGGCGTAAGGCGCGCCGGCAGGAAA
TCATCTGAGCACAACTTTCCGTGTGTTCTGACCCAAGAGCAGACGACTCT
GATCCTCCGGCGAAACTTCGCCGACGTTTACGCAGGGTTTCTACCCGGCG
TGGATGAAAGAATCCCCGCCGCAGACGCCACGCCGAACGTCACGGGGGTC
ACGTTCGACGACGGCGGGGGCGCAGCACTGGCGGCTCCCTGTGATGCCGC
CGGGAGCCTGTCGTCAGTTGAATCGGTGCGAGTGAAGGGGTTGAATGCCG
TTTGTCGAAGGCGTGCCATAGCGCTCAGCTTTCCTTGCCATACGGTTTGC
TTCCGCGAGTTGACCACGTGAGCGCGCCGGCAGGAAATCATCTGAGCACA
ACTTTCCGTGTGTTCTGACCCAAGAGCAGACGACTCTGATCCTCCGGCGA
AACTTCGCCGACGTTTACGCAGGGTTTCTACCCGGCGTGGATGAAAGAAT
CCCCGCCGCAGACGCCACGCCGAACGTCACGGGGGTCACGTTCGACGACG
GCGGGGGCGCAGCACTGGCGGCTCCCTGTGATGCCGCCGGGAGCCTGTCG
TCAGTTGAATCGGTGCGAGTGAAGGGGTTGAATGCCGTTTGTCGAAGGCG
TGCCATAGCGCTCAGCTTTCCTTGCCATACGGTTTGCTTCCGCGAGTTGA
CCACGTGA
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