mRNA_H-elongata_contig5927.13438.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5927.13438.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 101 bits (251), Expect = 3.520e-23 Identity = 45/76 (59.21%), Postives = 59/76 (77.63%), Query Frame = 1
Query: 7 VPLYIDNTSALHVASNRTYNPRAKHIALRYCFVQELVEECKISIHYVKTEDQLADLGTKHLSKHRHRNLTKLINEI 234
+P+Y DNT+ LH NR+++ R KHIALR+ F++ELV E KISIHYV TED LAD+GTKH +KHR ++L LIN +
Sbjct: 581 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNL 656
BLAST of mRNA_H-elongata_contig5927.13438.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 100 bits (249), Expect = 6.790e-23 Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = 1
Query: 7 VPLYIDNTSALHVASNRTYNPRAKHIALRYCFVQELVEECKISIHYVKTEDQLADLGTKHLSKHRHRNLTKLINEI 234
+P+Y DNT+ LH NR+++ R KHIALR+ F++ELV E KISIHYV TED LAD+GTKH +KHR ++L LIN
Sbjct: 1589 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664
BLAST of mRNA_H-elongata_contig5927.13438.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 1.250e-22 Identity = 44/76 (57.89%), Postives = 58/76 (76.32%), Query Frame = 1
Query: 7 VPLYIDNTSALHVASNRTYNPRAKHIALRYCFVQELVEECKISIHYVKTEDQLADLGTKHLSKHRHRNLTKLINEI 234
+P+Y DNT+ LH NR+++ R KHIALR+ F++ELV E KISIHYV+TED LAD+GTKH + HR ++L LIN
Sbjct: 920 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNF 995
BLAST of mRNA_H-elongata_contig5927.13438.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 3.740e-22 Identity = 44/76 (57.89%), Postives = 56/76 (73.68%), Query Frame = 1
Query: 7 VPLYIDNTSALHVASNRTYNPRAKHIALRYCFVQELVEECKISIHYVKTEDQLADLGTKHLSKHRHRNLTKLINEI 234
+P+Y DNT+ LH NR+++ R KHIALR+ F++ELV E KISIHY TED LAD+GTKH +KHR +L LIN
Sbjct: 360 LPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNF 435
BLAST of mRNA_H-elongata_contig5927.13438.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 1.830e-20 Identity = 39/74 (52.70%), Postives = 58/74 (78.38%), Query Frame = 1
Query: 7 VPLYIDNTSALHVASNRTYNPRAKHIALRYCFVQELVEECKISIHYVKTEDQLADLGTKHLSKHRHRNLTKLIN 228
VPLY DNT+ LH NR+++ R KHIALR+ +++EL+ E +ISIHY+ T+ +AD+GTKHL+KHR ++L +I+
Sbjct: 1090 VPLYCDNTATLHALGNRSFSSRTKHIALRFFYIRELISEGRISIHYIPTDSNIADIGTKHLNKHRLKHLLDIIS 1163
BLAST of mRNA_H-elongata_contig5927.13438.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 1.180e-19 Identity = 44/78 (56.41%), Postives = 62/78 (79.49%), Query Frame = 1
Query: 4 SVPLYIDNTSALHVASNRTYNPRAKHIALRYCFVQELVEECKISIHYVKTEDQLADLGTKHLSKHRHRNLTKLINEIK 237
S PLYI NT+ LHV N+T++ R KH+ALR+ +++E+V+E +ISIHY+ TED LAD+GTKHL+K RH+ L I++IK
Sbjct: 613 SAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCL---IDKIK 686
BLAST of mRNA_H-elongata_contig5927.13438.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 1.950e-18 Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 1
Query: 7 VPLYIDNTSALHVASNRT-YNPRAKHIALRYCFVQELVEECKISIHYVKTEDQLADLGTKHLSKHRHRNLTKLINEI 234
VPLY DNT+ LH NR+ ++ R KHIALR+ +++ELV E +ISIHY+ T+ AD+GTKHL+KHR ++L +I+
Sbjct: 901 VPLYCDNTATLHALGNRSSFSSRTKHIALRFFYIRELVSEGRISIHYIPTDSNPADIGTKHLNKHRLKHLLDIISSF 977
BLAST of mRNA_H-elongata_contig5927.13438.1 vs. uniprot
Match: A0A6H5KCX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX7_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 2.820e-18 Identity = 40/70 (57.14%), Postives = 53/70 (75.71%), Query Frame = 1
Query: 28 TSALHVASNRTYNPRAKHIALRYCFVQELVEECKISIHYVKTEDQLADLGTKH-LSKHRHRNLTKLINEI 234
T+ LH NR+++ R KHIALR+ F++ELV E KISIHYV TED LAD+GTKH ++KHR ++L L+N
Sbjct: 189 TATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFINKHRFKHLMDLVNNF 258
BLAST of mRNA_H-elongata_contig5927.13438.1 vs. uniprot
Match: A0A6H5J9N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N2_9PHAE) HSP 1 Score: 85.9 bits (211), Expect = 4.920e-18 Identity = 39/76 (51.32%), Postives = 54/76 (71.05%), Query Frame = 1
Query: 7 VPLYIDNTSALHVASNRTYNPRAKHIALRYCFVQELVEECKISIHYVKTEDQLADLGTKHLSKHRHRNLTKLINEI 234
VPLY DNT+ LH NR+++ R KHIALR+ F+++LV E KI IH+V T+ AD+GTKHL+K R ++L +I
Sbjct: 278 VPLYCDNTATLHSLGNRSHSSRTKHIALRFFFIRDLVSEGKIFIHFVPTDSNPADIGTKHLNKDRFQHLLNMIKNF 353
BLAST of mRNA_H-elongata_contig5927.13438.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 4.980e-18 Identity = 39/76 (51.32%), Postives = 56/76 (73.68%), Query Frame = 1
Query: 7 VPLYIDNTSALHVASNRTYNPRAKHIALRYCFVQELVEECKISIHYVKTEDQLADLGTKHLSKHRHRNLTKLINEI 234
VPLY DNT+ LH NR+++ R HIALR+ +++ELV E +ISIHYV T+ LAD+GTK+L+KH ++L +I+
Sbjct: 1118 VPLYCDNTATLHALGNRSFSSRENHIALRFFYIRELVLEGRISIHYVPTDSNLADIGTKYLNKHWLKHLLDIISSF 1193 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5927.13438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5927.13438.1 >prot_H-elongata_contig5927.13438.1 ID=prot_H-elongata_contig5927.13438.1|Name=mRNA_H-elongata_contig5927.13438.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp GSVPLYIDNTSALHVASNRTYNPRAKHIALRYCFVQELVEECKISIHYVKback to top mRNA from alignment at H-elongata_contig5927:9384..9626+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5927.13438.1 ID=mRNA_H-elongata_contig5927.13438.1|Name=mRNA_H-elongata_contig5927.13438.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig5927:9384..9626+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5927:9384..9626+ >mRNA_H-elongata_contig5927.13438.1 ID=mRNA_H-elongata_contig5927.13438.1|Name=mRNA_H-elongata_contig5927.13438.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig5927:9384..9626+ (Himanthalia elongata Himel1 dioecious)back to top |