mRNA_H-elongata_contig59085.13418.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig59085.13418.1
Unique NamemRNA_H-elongata_contig59085.13418.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig59085.13418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig59085contigH-elongata_contig59085:1176..1738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size563
Cds size495
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930958.556051-UTR-H-elongata_contig59085:1175..12431622930958.556051-UTR-H-elongata_contig59085:1175..1243Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59085 1176..1243 +
1691679640.592595-UTR-H-elongata_contig59085:1175..12431691679640.592595-UTR-H-elongata_contig59085:1175..1243Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig59085 1176..1243 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930958.568741-CDS-H-elongata_contig59085:1243..17381622930958.568741-CDS-H-elongata_contig59085:1243..1738Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59085 1244..1738 +
1691679640.6037855-CDS-H-elongata_contig59085:1243..17381691679640.6037855-CDS-H-elongata_contig59085:1243..1738Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig59085 1244..1738 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig59085.13418.1prot_H-elongata_contig59085.13418.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig59085 1244..1738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig59085.13418.1

>prot_H-elongata_contig59085.13418.1 ID=prot_H-elongata_contig59085.13418.1|Name=mRNA_H-elongata_contig59085.13418.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=165bp
MCTSFESPRMPSYGTLKSGTSEVCAQHTLNGMPDAFADICAGNGCSKQPC
YGMVTREMREHCVEDVLKGMADCAKYASEGIANVSGKMCGDYGCSLHPSY
RVNGTMKPEYCAVNAFEGMANVYLKRCADDEPYKKPIYGMAGRKRPKCCS
ENALKGIASVTKECA
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mRNA from alignment at H-elongata_contig59085:1176..1738+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig59085.13418.1 ID=mRNA_H-elongata_contig59085.13418.1|Name=mRNA_H-elongata_contig59085.13418.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=563bp|location=Sequence derived from alignment at H-elongata_contig59085:1176..1738+ (Himanthalia elongata Himel1 dioecious)
AGATTTCTGGAAACTCGAGCATCGGATAGGTACTTGAAACACTGGAGATT
ATCTACTTTGCTTGGAAGATGTGTACCAGCTTCGAATCCCCTAGGATGCC
GAGTTACGGGACGCTCAAGAGCGGCACGTCGGAGGTTTGTGCGCAACATA
CTTTGAATGGGATGCCCGATGCTTTTGCAGATATATGTGCTGGAAATGGG
TGCTCTAAGCAACCGTGCTACGGGATGGTGACCAGGGAGATGCGAGAGCA
CTGCGTCGAGGATGTTTTAAAGGGAATGGCGGACTGTGCCAAGTATGCGT
CCGAGGGTATAGCAAATGTTTCCGGCAAAATGTGTGGCGACTATGGTTGC
TCTCTGCACCCGAGCTACAGGGTAAATGGCACGATGAAGCCGGAGTACTG
CGCCGTAAATGCTTTTGAGGGGATGGCTAATGTTTATTTGAAGAGATGCG
CCGACGATGAACCCTATAAGAAGCCAATTTACGGAATGGCGGGCAGAAAG
AGACCCAAATGTTGCTCTGAGAATGCGTTGAAGGGGATCGCTAGCGTTAC
AAAGGAGTGTGCG
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Coding sequence (CDS) from alignment at H-elongata_contig59085:1176..1738+

>mRNA_H-elongata_contig59085.13418.1 ID=mRNA_H-elongata_contig59085.13418.1|Name=mRNA_H-elongata_contig59085.13418.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=990bp|location=Sequence derived from alignment at H-elongata_contig59085:1176..1738+ (Himanthalia elongata Himel1 dioecious)
ATGTGTACCAGCTTCGAATCCCCTAGGATGCCGAGTTACGGGACGCTCAA
GAGCGGCACGTCGGAGGTTTGTGCGCAACATACTTTGAATGGGATGCCCG
ATGCTTTTGCAGATATATGTGCTGGAAATGGGTGCTCTAAGCAACCGTGC
TACGGGATGGTGACCAGGGAGATGCGAGAGCACTGCGTCGAGGATGTTTT
AAAGGGAATGGCGGACTGTGCCAAGTATGCGTCCGAGGGTATAGCAAATG
TTTCCGGCAAAATGTGTGGCGACTATGGTTGCTCTCTGCACCCGAGCTAC
AGGGTAAATGGCACGATGAAGCCGGAGTACTGCGCCGTAAATGCTTTTGA
GGGGATGGCTAATGTTTATTTGAAGAGATGCGCCGACGATGAACCCTATA
AGAAGCCAATTTACGGAATGGCGGGCAGAAAGAGACCCAAATGTTGCTCT
GAGAATGCGTTGAAGGGGATCGCTAGCGTTACAAAGGAGTGTGCGATGTG
TACCAGCTTCGAATCCCCTAGGATGCCGAGTTACGGGACGCTCAAGAGCG
GCACGTCGGAGGTTTGTGCGCAACATACTTTGAATGGGATGCCCGATGCT
TTTGCAGATATATGTGCTGGAAATGGGTGCTCTAAGCAACCGTGCTACGG
GATGGTGACCAGGGAGATGCGAGAGCACTGCGTCGAGGATGTTTTAAAGG
GAATGGCGGACTGTGCCAAGTATGCGTCCGAGGGTATAGCAAATGTTTCC
GGCAAAATGTGTGGCGACTATGGTTGCTCTCTGCACCCGAGCTACAGGGT
AAATGGCACGATGAAGCCGGAGTACTGCGCCGTAAATGCTTTTGAGGGGA
TGGCTAATGTTTATTTGAAGAGATGCGCCGACGATGAACCCTATAAGAAG
CCAATTTACGGAATGGCGGGCAGAAAGAGACCCAAATGTTGCTCTGAGAA
TGCGTTGAAGGGGATCGCTAGCGTTACAAAGGAGTGTGCG
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