mRNA_H-elongata_contig5878.13372.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5878.13372.1
Unique NamemRNA_H-elongata_contig5878.13372.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5878.13372.1 vs. uniprot
Match: D8LJS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS1_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.190e-23
Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 MANVK-EEKVPVTEVLEEDDEFEEFAEANWDETAEDQEDLQQWQXXXXXXXXXXDFCNQLRAELDKIK 201
            M++VK EEKVPV EVLEEDDEFEEFAEANWDETAEDQEDLQQWQ  XXXXXXXXDFCNQLRAEL+K K
Sbjct:    1 MSDVKVEEKVPVAEVLEEDDEFEEFAEANWDETAEDQEDLQQWQDDXXXXXXXXDFCNQLRAELEKTK 68
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BLAST of mRNA_H-elongata_contig5878.13372.1 vs. uniprot
Match: A0A7S2CP29_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CP29_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.500e-11
Identity = 34/56 (60.71%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:   22 KVPVTEVLEEDDEFEEFAEANWDETAEDQEDLQQWQXXXXXXXXXXDFCNQLRAEL 189
            + P  EVLEEDDEFEEFAE NWD++AED ED  QW+          DF NQLRAEL
Sbjct:   23 EAPKLEVLEEDDEFEEFAEKNWDKSAEDGEDAAQWEEDWDDGELDDDFTNQLRAEL 78
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BLAST of mRNA_H-elongata_contig5878.13372.1 vs. uniprot
Match: A0A7S1ZHX0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZHX0_TRICV)

HSP 1 Score: 55.1 bits (131), Expect = 3.150e-8
Identity = 30/56 (53.57%), Postives = 32/56 (57.14%), Query Frame = 1 
Query:   28 PVTEVLEEDDEFEEFAEANWDETAEDQEDLQQWQXXXXXXXXXXDFCNQLRAELDK 195
            P+TE +EEDDEFEEF    WD   ED ED QQWQ          DF   LRAEL K
Sbjct:   38 PITEAIEEDDEFEEFEPCRWDAHDEDAEDAQQWQDNWDDDDIEDDFTKNLRAELTK 93
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BLAST of mRNA_H-elongata_contig5878.13372.1 vs. uniprot
Match: A0A7S4EAY6_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EAY6_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 4.850e-8
Identity = 33/60 (55.00%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   16 EEKVPVTEVLEEDDEFEEFAEANWDETAEDQEDLQQWQXXXXXXXXXXDFCNQLRAELDK 195
            E++ P  EV EEDDEFEEFA+ NWD  AED ED + WQ  X       DFC  LR EL K
Sbjct:  115 EKRKPDYEVYEEDDEFEEFAQDNWDAAAEDAEDPKLWQDDXDDDDVDDDFCRHLREELQK 174
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BLAST of mRNA_H-elongata_contig5878.13372.1 vs. uniprot
Match: A0A8J5X4N4_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X4N4_DIALT)

HSP 1 Score: 52.0 bits (123), Expect = 2.330e-7
Identity = 30/52 (57.69%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:   40 VLEEDDEFEEFAEANWDETAEDQEDLQQWQXXXXXXXXXXDFCNQLRAELDK 195
            +LEEDDEFEEF   +WD TAED ED Q WQ          DF  QLRAEL K
Sbjct:   12 MLEEDDEFEEFEAESWDLTAEDAEDQQLWQDDWDEDDAKNDFTQQLRAELAK 63
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BLAST of mRNA_H-elongata_contig5878.13372.1 vs. uniprot
Match: I1CD22_RHIO9 (26S proteasome complex subunit DSS1 n=2 Tax=Rhizopus TaxID=4842 RepID=I1CD22_RHIO9)

HSP 1 Score: 50.1 bits (118), Expect = 2.070e-6
Identity = 28/52 (53.85%), Postives = 31/52 (59.62%), Query Frame = 1 
Query:   40 VLEEDDEFEEFAEANWDETAEDQEDLQQWQXXXXXXXXXXDFCNQLRAELDK 195
            VLEEDDEFEEFA  +W E  EDQ D   W+          DF  QLRAEL+K
Sbjct:   24 VLEEDDEFEEFAAEDWGEEEEDQNDAHFWEDNWDDDDIEDDFSKQLRAELEK 75
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BLAST of mRNA_H-elongata_contig5878.13372.1 vs. uniprot
Match: A0A0U2T7H1_9MAXI (Putative 26S proteasome complex subunit DSS1 n=1 Tax=Pseudodiaptomus poplesia TaxID=213370 RepID=A0A0U2T7H1_9MAXI)

HSP 1 Score: 48.9 bits (115), Expect = 4.010e-6
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:   40 VLEEDDEFEEFAEANWDETAEDQEDLQQWQXXXXXXXXXXDFCNQLRAELD 192
            +LEEDDEFEEF + +WD   EDQ D++ W+          DFCNQLR  L+
Sbjct:   10 LLEEDDEFEEFEQEDWDIRREDQTDIKVWEDNWDNDDLESDFCNQLRKVLE 60
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BLAST of mRNA_H-elongata_contig5878.13372.1 vs. uniprot
Match: UPI00077AF97D (26S proteasome complex subunit DSS1-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AF97D)

HSP 1 Score: 47.4 bits (111), Expect = 1.900e-5
Identity = 26/52 (50.00%), Postives = 31/52 (59.62%), Query Frame = 1 
Query:   40 VLEEDDEFEEFAEANWDETAEDQEDLQQWQXXXXXXXXXXDFCNQLRAELDK 195
            +LEEDDEFEEFA   W    EDQ D+  W+          DF +QLRAEL+K
Sbjct:   11 LLEEDDEFEEFAAEEWTVVDEDQTDIHVWEDNWDDDTVEDDFSHQLRAELEK 62
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BLAST of mRNA_H-elongata_contig5878.13372.1 vs. uniprot
Match: A0A0A1NYM3_RHIZD (26S proteasome complex subunit DSS1 n=4 Tax=Rhizopus TaxID=4842 RepID=A0A0A1NYM3_RHIZD)

HSP 1 Score: 47.0 bits (110), Expect = 3.360e-5
Identity = 33/52 (63.46%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:   40 VLEEDDEFEEFAEANWDETAEDQEDLQQWQXXXXXXXXXXDFCNQLRAELDK 195
            VLEEDDEFEEFA  +W E  EDQ D   W+XXXXXX     F  QLRAEL+K
Sbjct:   24 VLEEDDEFEEFATEDWGEDEEDQSDAHFWEXXXXXXDIDDAFSKQLRAELEK 75
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BLAST of mRNA_H-elongata_contig5878.13372.1 vs. uniprot
Match: A0A0D2WWT7_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WWT7_CAPO3)

HSP 1 Score: 46.6 bits (109), Expect = 4.170e-5
Identity = 25/52 (48.08%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:   40 VLEEDDEFEEFAEANWDETAEDQEDLQQWQXXXXXXXXXXDFCNQLRAELDK 195
            +LEEDDEFEEF +  W+ +AED+ D Q W+          DF  QLRAEL +
Sbjct:   22 LLEEDDEFEEFPQEEWNGSAEDKTDQQLWEDNWDDDAAEDDFAKQLRAELSQ 73
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5878.13372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LJS1_ECTSI1.190e-2388.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CP29_9STRA2.500e-1160.71Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1ZHX0_TRICV3.150e-853.57Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4EAY6_9STRA4.850e-855.00Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
A0A8J5X4N4_DIALT2.330e-757.69Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
I1CD22_RHIO92.070e-653.8526S proteasome complex subunit DSS1 n=2 Tax=Rhizop... [more]
A0A0U2T7H1_9MAXI4.010e-649.02Putative 26S proteasome complex subunit DSS1 n=1 T... [more]
UPI00077AF97D1.900e-550.0026S proteasome complex subunit DSS1-like n=1 Tax=A... [more]
A0A0A1NYM3_RHIZD3.360e-563.4626S proteasome complex subunit DSS1 n=4 Tax=Rhizop... [more]
A0A0D2WWT7_CAPO34.170e-548.08Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5878contigH-elongata_contig5878:3993..6725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDSS1/SEM1
Ec32 orthologEc-12_003050.1
Exons3
Model size201
Cds size201
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5878.13372.1prot_H-elongata_contig5878.13372.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5878 3993..6725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930953.103331-CDS-H-elongata_contig5878:3992..40581622930953.103331-CDS-H-elongata_contig5878:3992..4058Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5878 3993..4058 +
1691679638.5017502-CDS-H-elongata_contig5878:3992..40581691679638.5017502-CDS-H-elongata_contig5878:3992..4058Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5878 3993..4058 +
1622930953.1236138-CDS-H-elongata_contig5878:5485..55481622930953.1236138-CDS-H-elongata_contig5878:5485..5548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5878 5486..5548 +
1691679638.5109308-CDS-H-elongata_contig5878:5485..55481691679638.5109308-CDS-H-elongata_contig5878:5485..5548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5878 5486..5548 +
1622930953.1399183-CDS-H-elongata_contig5878:6653..67251622930953.1399183-CDS-H-elongata_contig5878:6653..6725Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5878 6654..6725 +
1691679638.5194209-CDS-H-elongata_contig5878:6653..67251691679638.5194209-CDS-H-elongata_contig5878:6653..6725Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5878 6654..6725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5878.13372.1

>prot_H-elongata_contig5878.13372.1 ID=prot_H-elongata_contig5878.13372.1|Name=mRNA_H-elongata_contig5878.13372.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MANVKEEKVPVTEVLEEDDEFEEFAEANWDETAEDQEDLQQWQDDWDDDD
KDDDFCNQLRAELDKIK
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mRNA from alignment at H-elongata_contig5878:3993..6725+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5878.13372.1 ID=mRNA_H-elongata_contig5878.13372.1|Name=mRNA_H-elongata_contig5878.13372.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2733bp|location=Sequence derived from alignment at H-elongata_contig5878:3993..6725+ (Himanthalia elongata Himel1 dioecious)
ATGGCGAACGTCAAGGAGGAGAAGGTGCCCGTTACAGAAGTGCTGGAGGA
GGACGATGAGTTTGAGGTGAGGGGTGCTCATGGCATGATCACTGCCAAGT
GATCATCTGGGCTTCACCATAGAACCGTACGACTGACTCTTGGTGAACGA
GCGTACACCAACTTTACGAAAGTTGCTCCCCTGGACTTCGCTGTTCGTGG
TGAAAAGTGTGATTCGAGGGGTGTTAATGAGTTCATATGTTTTTTAAAAG
GAAACTGTGTGTGCTCGCTGGTAACTCTATGGAAGTCGCTTGATGTCACC
ACCCCGGGTGGCCTCATTGCACTAGGTAGGTCCCACTCCAGTAGGTATTC
GAAGTCCATTCAAGGTACCTGGTACAATAAGTAGCAATGCTATTTCCTTC
TACAGTAGAGCAATGGTAATGGACAAAGCGGAAACTGAATCGGCACCAAC
TCACGGTATCGTTATATGTTATTTGAAGCGCCTGCTGCGAGACCGCGGGG
CCAGAGCCGTAGTTTTCTGAAAACACAAGAGAGCACTAACCCCCATGCTA
CCCAAACCCTGCCCTTGATAATTCATTGTGCCTCGAAAAAACGAGGTGAA
AAGCGAGGGGTGGCACTAATAAAAATAATAACTGTAATAACAGTGGAACT
ACGGACATCATAAGCAACTGAGGAACGTAAGGGGGCGCCATACCGGTTTG
CAACTAACCCCCTACCCACTATGAGGCGCTTTCTCTAATTACGAATCGGT
GTGGCGCCCCCTTACGGTTCATGCTGGTTTTCACGGTCTAACGCAAAACA
ATAAAAAAGGGGAACATAAGGTCAAGATATGTTTAGTTTACTCAAACCTA
GCTTTGTTATTAATTTACATTTTGTGTAAGGGTGTGCTGGTTAAGCGGAA
GTCGCGGAGACTTCTAGCTCTACTCATGAACATCTATTGCCCGTATTTGT
ACAGTATAGTATGGGGGAGCTAATATATATATAAACATTATTACTTAGGC
CGGGTCTTATCGGAATACATAAATTTATATTTCCAGCCGGTTTAAATTTA
AATCGGGCTCTGATTGGACAAAGGCTAGGCGTTATTTCGACCAATTGAGC
CCGATTTAAATTTAAATCAACTGAAAATATATATTTTTGTATTCCGAGAA
GACCCGGCCTTATCACCCAAACCCCGCTCTTATCTGCAGAAATCGGTCAA
AGTCGCGACTCTCGAAGTATATGCATCCCTCTCCGAATTATCGTCGAGGG
CAGATACAAAATTTCAGTGATTTCGCCAAGTGAAATGCCTGCCAACCATG
CCAATCTAATGTTATCCTCAGCAACCTGTTCAAGGCCGGCATTTTTCGTG
CAGCTAAAGACGCCACGTTCACGAAAGCGAATGGGCTACTGCCACGACGA
ATATGCTGGTGATTTTGAAATCAACCATGACGTCCCGAATCCCGCTTTGC
CCTACCCTTGACGGCCGTGACGTCCGTTATTGTCGCCGCCCAGGAGTTTG
CCGAAGCAAACTGGGACGAGACTGCGGAGGATCAGGAGGACCTTCAGCAA
TGGCAGGTGAGCGCACACCGTCGTTATCCAAGAATTGTTTTGATATCCAG
AAGACTTTCTTTCACATGACCCCTTCCGTGCAGTCCAGAACGTGCTATTG
AGGGTACTTGTACTTAGTCTCATACCGTCGATGGACTTCCAAATTCACGG
CGCGGGAGTGGGGGGGGGTCTCTTATCCCCGGTTTGACTATCGGCTATCG
AAAGCGCTGAACGTAGCTAGGCGCGTAGCTAGGCGGCGATATTTCCCTAG
AGTGGTTTTATTAACCGTACGAGGCGTTGACTATTTTGTTGTTAAATATT
GCATGCGCCGTAAGCTGTTATTAATAGTTTTCCTTGTGTGATTGAACACG
AGGATGTTGTCACGTTTTCGGATCATCCCTGGTCAGGTTAGGTGCGCGTA
AAGAGGGATCACCAAAATGCGGCCCATGGACCTTCGAACATACTTTTGAA
ACCACAAAACGATATACTAGTGGTATTTGTTTGATCAAAAGCTCTCTCTT
TACCCGAGCAGTCTTAAGTCTTAACCCTTTTTTTATTTATACCATTGACA
GCAGGACAGTAGTGCAAAATCATTAATAATCAATAATTAATTAGTTCGAA
TCCCCAGGATTGTTTGATTTTGGTGTTCTCTATGAGTAGCGGCAGAATAC
GTAAACGCGGGAGGAAGTTATCAGGTCGCATCACGATATAAAATCGTAAG
CGTGAACCAACGGGGGAGAAATGAAAAAGGTTCATCCCTTAGGACCACGG
GCTATGACGGGATAAGCAACAATGCAGAAGGCAGGATGGATAGAGCCTAG
CGTGTTGAATGGCCAATGATACAGTATCGCACTTGATCGTGTTATCCTAC
ACCTACACACGCTGAAGGTGAAAATATAATATCATCAGTGTTCGACTATC
GTTGGTCGTTGCCATGATGCCTCCTGTATCACGGTGTGTATCTATGTATG
TATGTATTTTTATTAAATTGCACATAACCGCGCAATCTGGCGCTGTAATC
AATGATTTTTTTTTTTTACGTCCCAACAAAACCCACTATTCGATGCAGTT
ACCAATACGATTGTGAACTTTTATATCGCGCTTCACGTTTCTCCGAACGA
ACCATAATAAGGATGACTGGGATGACGACGATAAAGACGACGACTTCTGC
AACCAGCTGAGGGCGGAGCTGGATAAAATCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig5878:3993..6725+

>mRNA_H-elongata_contig5878.13372.1 ID=mRNA_H-elongata_contig5878.13372.1|Name=mRNA_H-elongata_contig5878.13372.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig5878:3993..6725+ (Himanthalia elongata Himel1 dioecious)
ATGGCGAACGTCAAGGAGGAGAAGGTGCCCGTTACAGAAGTGCTGGAGGA
GGACGATGAGTTTGAGATGGCGAACGTCAAGGAGGAGAAGGTGCCCGTTA
CAGAAGTGCTGGAGGAGGACGATGAGTTTGAGGAGTTTGCCGAAGCAAAC
TGGGACGAGACTGCGGAGGATCAGGAGGACCTTCAGCAATGGCAGGAGTT
TGCCGAAGCAAACTGGGACGAGACTGCGGAGGATCAGGAGGACCTTCAGC
AATGGCAGGATGACTGGGATGACGACGATAAAGACGACGACTTCTGCAAC
CAGCTGAGGGCGGAGCTGGATAAAATCAAGGATGACTGGGATGACGACGA
TAAAGACGACGACTTCTGCAACCAGCTGAGGGCGGAGCTGGATAAAATCA
AG
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