mRNA_H-elongata_contig58703.13362.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig58703.13362.1
Unique Name	mRNA_H-elongata_contig58703.13362.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

[Close]

BLAST of mRNA_H-elongata_contig58703.13362.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 2.660e-19
Identity = 40/48 (83.33%), Postives = 43/48 (89.58%), Query Frame = 1

Query:    1 IGVSWEDKGQMVRGKPLEWWRVKARDYPMLASLARRVLCIPASHAQSE 144
            + VSWE+KGQ VRGKPLEWWRVKAR+YP LASLARRVLCIPA  AQSE
Sbjct:  465 LAVSWEEKGQEVRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSE 512

[Close]

BLAST of mRNA_H-elongata_contig58703.13362.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 2.120e-7
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 1

Query:   16 EDK-GQMVRGKPLEWWRVKARDYPMLASLARRVLCIPASHAQSE 144
            EDK G  V   PL+WWRV+  D+P LA+LARRVL IPA+ A+SE
Sbjct:  212 EDKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESE 255

[Close]

BLAST of mRNA_H-elongata_contig58703.13362.1 vs. uniprot
Match: A0A1A8CIX7_9TELE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothobranchius kadleci TaxID=1051664 RepID=A0A1A8CIX7_9TELE)

HSP 1 Score: 48.9 bits (115), Expect = 3.080e-6
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 1

Query:   46 PLEWWRVKARDYPMLASLARRVLCIPASHAQSE 144
            PLEWW+V A  YP+LASLA+  LCIPA+   SE
Sbjct:   23 PLEWWKVNAYAYPILASLAKAYLCIPATSVPSE 55

[Close]

BLAST of mRNA_H-elongata_contig58703.13362.1 vs. uniprot
Match: A0A1A8B7X3_NOTFU (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8B7X3_NOTFU)

HSP 1 Score: 48.9 bits (115), Expect = 2.440e-5
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 1

Query:   46 PLEWWRVKARDYPMLASLARRVLCIPASHAQSE 144
            PLEWW+V A  YP+LASLA+  LCIPA+   SE
Sbjct:  252 PLEWWKVNAYAYPILASLAKAYLCIPATSVPSE 284

[Close]

BLAST of mRNA_H-elongata_contig58703.13362.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 48.5 bits (114), Expect = 3.430e-5
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 1

Query:   34 VRGKPLEWWRVKARDYPMLASLARRVLCIPASHAQSE 144
            V   PL+ WR K  +YP+LA+LARRVL IP+S AQSE
Sbjct:  479 VFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSE 515

[Close]

BLAST of mRNA_H-elongata_contig58703.13362.1 vs. uniprot
Match: A0A1A7Y149_9TELE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Iconisemion striatum TaxID=60296 RepID=A0A1A7Y149_9TELE)

HSP 1 Score: 46.6 bits (109), Expect = 5.050e-5
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 1

Query:   46 PLEWWRVKARDYPMLASLARRVLCIPASHAQSE 144
            PLEWW+V A  YP+LA LA+  LCIPA+   SE
Sbjct:   75 PLEWWKVHAYAYPILAPLAKAYLCIPATSVPSE 107

[Close]

BLAST of mRNA_H-elongata_contig58703.13362.1 vs. uniprot
Match: UPI001CF4EC83 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Bufo gargarizans TaxID=30331 RepID=UPI001CF4EC83)

HSP 1 Score: 47.8 bits (112), Expect = 5.450e-5
Identity = 19/33 (57.58%), Postives = 26/33 (78.79%), Query Frame = 1

Query:   46 PLEWWRVKARDYPMLASLARRVLCIPASHAQSE 144
            PLEWWR+   ++P +ASLA++ LCIPA+ A SE
Sbjct:  169 PLEWWRLHQANFPRMASLAKKYLCIPATSAPSE 201

[Close]

BLAST of mRNA_H-elongata_contig58703.13362.1 vs. uniprot
Match: UPI001C04A074 (E3 SUMO-protein ligase ZBED1-like n=3 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C04A074)

HSP 1 Score: 47.8 bits (112), Expect = 6.430e-5
Identity = 20/43 (46.51%), Postives = 27/43 (62.79%), Query Frame = 1

Query:   16 EDKGQMVRGKPLEWWRVKARDYPMLASLARRVLCIPASHAQSE 144
            E K  ++   PL WW+  A +YP+LA LARR LC+P +   SE
Sbjct:  543 EVKPILLSDNPLTWWKAHAGEYPLLACLARRYLCVPGTSVSSE 585

[Close]

BLAST of mRNA_H-elongata_contig58703.13362.1 vs. uniprot
Match: A0A8C5BMU0_GADMO (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5BMU0_GADMO)

HSP 1 Score: 47.4 bits (111), Expect = 8.760e-5
Identity = 20/37 (54.05%), Postives = 25/37 (67.57%), Query Frame = 1

Query:   34 VRGKPLEWWRVKARDYPMLASLARRVLCIPASHAQSE 144
            +   PLEWW+V A  YP+LA LA+  LCIPA+   SE
Sbjct:  327 LNSSPLEWWKVNAYAYPILAPLAKAYLCIPATSVPSE 363

[Close]

BLAST of mRNA_H-elongata_contig58703.13362.1 vs. uniprot
Match: A0A8C1LHH7_CYPCA (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1LHH7_CYPCA)

HSP 1 Score: 47.4 bits (111), Expect = 8.780e-5
Identity = 20/37 (54.05%), Postives = 25/37 (67.57%), Query Frame = 1

Query:   34 VRGKPLEWWRVKARDYPMLASLARRVLCIPASHAQSE 144
            +   PLEWW+V A  YP+LA LA+  LCIPA+   SE
Sbjct:  419 LNSSPLEWWKVNAYAYPILAPLAKAYLCIPATSVPSE 455

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig58703.13362.1 vs. uniprot

BLAST of mRNA_H-elongata_contig58703.13362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18


Match Name	E-value	Identity	Description
A0A6H5JHP9_9PHAE	2.660e-19	83.33	Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13...	[more]
A0A6H5JWI1_9PHAE	2.120e-7	61.36	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A1A8CIX7_9TELE	3.080e-6	63.64	Dimer_Tnp_hAT domain-containing protein (Fragment)...	[more]
A0A1A8B7X3_NOTFU	2.440e-5	63.64	Dimer_Tnp_hAT domain-containing protein n=4 Tax=No...	[more]
D8LCS5_ECTSI	3.430e-5	62.16	Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec...	[more]
A0A1A7Y149_9TELE	5.050e-5	60.61	Dimer_Tnp_hAT domain-containing protein (Fragment)...	[more]
UPI001CF4EC83	5.450e-5	57.58	E3 SUMO-protein ligase ZBED1-like n=1 Tax=Bufo gar...	[more]
UPI001C04A074	6.430e-5	46.51	E3 SUMO-protein ligase ZBED1-like n=3 Tax=Melanota...	[more]
A0A8C5BMU0_GADMO	8.760e-5	54.05	Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ga...	[more]
A0A8C1LHH7_CYPCA	8.780e-5	54.05	Dimer_Tnp_hAT domain-containing protein n=2 Tax=Cy...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig58703	contig	H-elongata_contig58703:2982..3128 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	147
Cds size	117
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930951.5995736-UTR-H-elongata_contig58703:2981..3011	1622930951.5995736-UTR-H-elongata_contig58703:2981..3011	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig58703 2982..3011 +
1691679637.9535847-UTR-H-elongata_contig58703:2981..3011	1691679637.9535847-UTR-H-elongata_contig58703:2981..3011	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig58703 2982..3011 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930951.61435-CDS-H-elongata_contig58703:3011..3128	1622930951.61435-CDS-H-elongata_contig58703:3011..3128	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig58703 3012..3128 +
1691679637.9630356-CDS-H-elongata_contig58703:3011..3128	1691679637.9630356-CDS-H-elongata_contig58703:3011..3128	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig58703 3012..3128 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig58703.13362.1	prot_H-elongata_contig58703.13362.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig58703 3012..3128 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig58703:2982..3128+
coding sequence from alignment at H-elongata_contig58703:2982..3128+

protein sequence of mRNA_H-elongata_contig58703.13362.1

>prot_H-elongata_contig58703.13362.1 ID=prot_H-elongata_contig58703.13362.1|Name=mRNA_H-elongata_contig58703.13362.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
MVRGKPLEWWRVKARDYPMLASLARRVLCIPASHAQSE*

mRNA from alignment at H-elongata_contig58703:2982..3128+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig58703.13362.1 ID=mRNA_H-elongata_contig58703.13362.1|Name=mRNA_H-elongata_contig58703.13362.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig58703:2982..3128+ (Himanthalia elongata Himel1 dioecious)
ATAGGAGTGAGCTGGGAAGATAAGGGTCAGATGGTTCGCGGCAAGCCACT
TGAGTGGTGGCGTGTCAAAGCGCGGGATTATCCTATGCTGGCTTCACTGG
CTCGCCGGGTACTGTGCATCCCAGCATCCCATGCGCAATCGGAGTGA

Coding sequence (CDS) from alignment at H-elongata_contig58703:2982..3128+

>mRNA_H-elongata_contig58703.13362.1 ID=mRNA_H-elongata_contig58703.13362.1|Name=mRNA_H-elongata_contig58703.13362.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at H-elongata_contig58703:2982..3128+ (Himanthalia elongata Himel1 dioecious)
ATGGTTCGCGGCAAGCCACTTGAGTGGTGGCGTGTCAAAGCGCGGGATTA
TCCTATGCTGGCTTCACTGGCTCGCCGGGTACTGTGCATCCCAGCATCCC
ATGCGCAATCGGAGTGAATGGTTCGCGGCAAGCCACTTGAGTGGTGGCGT
GTCAAAGCGCGGGATTATCCTATGCTGGCTTCACTGGCTCGCCGGGTACT
GTGCATCCCAGCATCCCATGCGCAATCGGAGTGA