mRNA_H-elongata_contig58627.13355.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58627.13355.1
Unique NamemRNA_H-elongata_contig58627.13355.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58627.13355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58627contigH-elongata_contig58627:2396..3542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue3.4e-09
Seed eggNOG ortholog2880.D8LFD9
KEGG koko:K00413,ko:K10632,ko:K11407
KEGG Pathwayko00190,ko01100,ko02020,ko04014,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,ko05034,ko05165,ko05203,map00190,map01100,map02020,map04014,map04260,map04714,map04932,map05010,map05012,map05016,map05034,map05165,map05203
KEGG ModuleM00151,M00152
GOsGO:0000151,GO:0000165,GO:0003674,GO:0003824,GO:0004842,GO:0005048,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005829,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007264,GO:0007265,GO:0008139,GO:0008150,GO:0008152,GO:0008270,GO:0009636,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010646,GO:0010648,GO:0012505,GO:0016020,GO:0016310,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0031090,GO:0031965,GO:0031967,GO:0031975,GO:0032182,GO:0032446,GO:0032991,GO:0033218,GO:0035556,GO:0036211,GO:0042221,GO:0042277,GO:0042493,GO:0042802,GO:0043130,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045471,GO:0046677,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0097305,GO:0140096,GO:1901564,GO:1901700,GO:1902494,GO:1990234
EggNOG free text desc.nuclear localization sequence binding
EggNOG OGsKOG0804@1,KOG0804@2759
EC2.3.2.27,3.5.1.98
COG Functional cat.GO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03019,ko03036,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size522
Cds size522
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930950.910032-CDS-H-elongata_contig58627:2395..24881622930950.910032-CDS-H-elongata_contig58627:2395..2488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58627 2396..2488 -
1691679637.7047045-CDS-H-elongata_contig58627:2395..24881691679637.7047045-CDS-H-elongata_contig58627:2395..2488Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58627 2396..2488 -
1622930950.9290154-CDS-H-elongata_contig58627:3113..35421622930950.9290154-CDS-H-elongata_contig58627:3113..3542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58627 3114..3542 -
1691679637.7185173-CDS-H-elongata_contig58627:3113..35421691679637.7185173-CDS-H-elongata_contig58627:3113..3542Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58627 3114..3542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58627.13355.1prot_H-elongata_contig58627.13355.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58627 2396..3542 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58627.13355.1

>prot_H-elongata_contig58627.13355.1 ID=prot_H-elongata_contig58627.13355.1|Name=mRNA_H-elongata_contig58627.13355.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=174bp
TSLVCLPAVPASLPLWSLLSPEDAFSLNDDLALPATVTASASTATITPDN
DDINNSGDAVLVNGSTSPTPPIGEGRGGVEVDVEVETTALTAATGRDEGA
PHASPRDRGTENGGPGAVRVVQVVSPGGSVSYRYTAVLYFRDAVKASLFV
EKFNGLALQDRAVLKAFFLAGVEI
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mRNA from alignment at H-elongata_contig58627:2396..3542-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58627.13355.1 ID=mRNA_H-elongata_contig58627.13355.1|Name=mRNA_H-elongata_contig58627.13355.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1147bp|location=Sequence derived from alignment at H-elongata_contig58627:2396..3542- (Himanthalia elongata Himel1 dioecious)
ACGTCTTTGGTGTGCCTTCCCGCCGTCCCCGCCTCGTTGCCTTTGTGGAG
CCTGCTGTCACCTGAAGACGCCTTCTCCCTCAACGATGACCTCGCGCTGC
CGGCAACGGTAACGGCATCGGCATCGACAGCAACAATAACACCGGACAAT
GATGACATTAATAATTCGGGAGACGCTGTCCTCGTCAACGGTTCGACATC
GCCCACACCACCGATCGGAGAGGGTCGAGGAGGGGTGGAAGTTGACGTCG
AGGTCGAGACCACGGCTTTGACTGCGGCTACCGGGAGAGATGAAGGGGCC
CCACACGCTTCTCCTAGAGACCGGGGGACAGAAAACGGTGGTCCGGGGGC
CGTGCGGGTCGTGCAGGTGGTGTCGCCGGGAGGATCAGTCTCATATCGCT
ACACAGCGGTGCTGTACTTTAGGGATGCGGTGAGGTGTTATTAAAAGAGA
GTGTTGACAGGGAAACGGGAATAGGGCACAGAGGGTCGATCTATTTCTCA
TTGTAGTCGGGGCTGCGGTTCATTTATATTCGTAGAAATGAATTATACTA
GAAAGTTGTACATTAAAATAAATCAAATGAACAAAAAATATATAATAAAC
ATGAAAAATATAATCCAGAGCTCTCGCTGAGGCGACAAAGCCCTGTGTGT
TTTCTCTATGGGTAGTGCACAAGTTTTCCATCATCTATGGCATCTGTCTC
TCGGGGTGCTCTGTGATGTAAGCGGTTAAGGTTAAAAGGGTTGTGCCGAA
CGATTGGGGCTTGATTGTCTCGTCATAAAGGACGGTTGTGGGTAATCGGG
TGGTATCCAAGGCCTCGACTCCAAAATGCCCGTTGCCCGTTCTAATTTAC
TATTAATATAATATTTGGGCTGCGGTAAGACAAATGTATAGATGTGTGTG
TGTGTGTGTGTCGTTGTATCTCGAACGATGGAATATTGAAGCTGCACTTG
TGCTCTAGAGTTTTATCGAAATATTTTGTTATTTTTATATATTATATACT
ATCTACTATATATTTTATACTGTACGGAGTATTATATTCTGATGATGCTG
CCAGGTCAAGGCGTCCTTATTTGTGGAAAAATTCAATGGCTTGGCTCTTC
AGGACAGGGCTGTCCTCAAAGCGTTCTTCCTTGCTGGTGTCGAGATC
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Coding sequence (CDS) from alignment at H-elongata_contig58627:2396..3542-

>mRNA_H-elongata_contig58627.13355.1 ID=mRNA_H-elongata_contig58627.13355.1|Name=mRNA_H-elongata_contig58627.13355.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at H-elongata_contig58627:2396..3542- (Himanthalia elongata Himel1 dioecious)
ACGTCTTTGGTGTGCCTTCCCGCCGTCCCCGCCTCGTTGCCTTTGTGGAG
CCTGCTGTCACCTGAAGACGCCTTCTCCCTCAACGATGACCTCGCGCTGC
CGGCAACGGTAACGGCATCGGCATCGACAGCAACAATAACACCGGACAAT
GATGACATTAATAATTCGGGAGACGCTGTCCTCGTCAACGGTTCGACATC
GCCCACACCACCGATCGGAGAGGGTCGAGGAGGGGTGGAAGTTGACGTCG
AGGTCGAGACCACGGCTTTGACTGCGGCTACCGGGAGAGATGAAGGGGCC
CCACACGCTTCTCCTAGAGACCGGGGGACAGAAAACGGTGGTCCGGGGGC
CGTGCGGGTCGTGCAGGTGGTGTCGCCGGGAGGATCAGTCTCATATCGCT
ACACAGCGGTGCTGTACTTTAGGGATGCGACGTCTTTGGTGTGCCTTCCC
GCCGTCCCCGCCTCGTTGCCTTTGTGGAGCCTGCTGTCACCTGAAGACGC
CTTCTCCCTCAACGATGACCTCGCGCTGCCGGCAACGGTAACGGCATCGG
CATCGACAGCAACAATAACACCGGACAATGATGACATTAATAATTCGGGA
GACGCTGTCCTCGTCAACGGTTCGACATCGCCCACACCACCGATCGGAGA
GGGTCGAGGAGGGGTGGAAGTTGACGTCGAGGTCGAGACCACGGCTTTGA
CTGCGGCTACCGGGAGAGATGAAGGGGCCCCACACGCTTCTCCTAGAGAC
CGGGGGACAGAAAACGGTGGTCCGGGGGCCGTGCGGGTCGTGCAGGTGGT
GTCGCCGGGAGGATCAGTCTCATATCGCTACACAGCGGTGCTGTACTTTA
GGGATGCGGTCAAGGCGTCCTTATTTGTGGAAAAATTCAATGGCTTGGCT
CTTCAGGACAGGGCTGTCCTCAAAGCGTTCTTCCTTGCTGGTGTCGAGAT
CGTCAAGGCGTCCTTATTTGTGGAAAAATTCAATGGCTTGGCTCTTCAGG
ACAGGGCTGTCCTCAAAGCGTTCTTCCTTGCTGGTGTCGAGATC
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