mRNA_H-elongata_contig58523.13337.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58523.13337.1
Unique NamemRNA_H-elongata_contig58523.13337.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58523.13337.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58523contigH-elongata_contig58523:2623..2958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size338
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930948.8186483-CDS-H-elongata_contig58523:2622..29401622930948.8186483-CDS-H-elongata_contig58523:2622..2940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58523 2623..2940 +
1691679636.8095253-CDS-H-elongata_contig58523:2622..29401691679636.8095253-CDS-H-elongata_contig58523:2622..2940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58523 2623..2940 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930948.8356278-UTR-H-elongata_contig58523:2940..29581622930948.8356278-UTR-H-elongata_contig58523:2940..2958Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58523 2941..2958 +
1691679636.81838-UTR-H-elongata_contig58523:2940..29581691679636.81838-UTR-H-elongata_contig58523:2940..2958Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58523 2941..2958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58523.13337.1prot_H-elongata_contig58523.13337.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58523 2623..2940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58523.13337.1

>prot_H-elongata_contig58523.13337.1 ID=prot_H-elongata_contig58523.13337.1|Name=mRNA_H-elongata_contig58523.13337.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
PPTAPPLNLPAARYNGSLPCEPAAADIIAPQITSESANTFINEINCILQH
GRCLPWRTSPITSLLSICPAGIFESRYPFEGEKPVVCRVVEEGQESFLPP
AAEPL*
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mRNA from alignment at H-elongata_contig58523:2623..2958+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58523.13337.1 ID=mRNA_H-elongata_contig58523.13337.1|Name=mRNA_H-elongata_contig58523.13337.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=336bp|location=Sequence derived from alignment at H-elongata_contig58523:2623..2958+ (Himanthalia elongata Himel1 dioecious)
CCGCCCACCGCCCCTCCCCTCAACCTCCCCGCTGCTCGGTATAACGGCAG
CCTCCCGTGCGAGCCCGCCGCCGCCGACATCATAGCACCGCAGATCACCA
GCGAGAGCGCCAACACATTTATCAATGAGATCAACTGTATACTGCAGCAC
GGTCGGTGCTTGCCTTGGCGAACCTCACCCATCACTAGTCTTCTCAGTAT
CTGCCCAGCGGGCATATTCGAATCACGATACCCCTTCGAAGGAGAAAAGC
CGGTCGTGTGTCGGGTGGTGGAAGAGGGACAAGAGTCCTTTCTCCCCCCA
GCCGCAGAACCTCTTTGAACAGTTCCGCGATTGGGC
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Coding sequence (CDS) from alignment at H-elongata_contig58523:2623..2958+

>mRNA_H-elongata_contig58523.13337.1 ID=mRNA_H-elongata_contig58523.13337.1|Name=mRNA_H-elongata_contig58523.13337.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig58523:2623..2958+ (Himanthalia elongata Himel1 dioecious)
CCGCCCACCGCCCCTCCCCTCAACCTCCCCGCTGCTCGGTATAACGGCAG
CCTCCCGTGCGAGCCCGCCGCCGCCGACATCATAGCACCGCAGATCACCA
GCGAGAGCGCCAACACATTTATCAATGAGATCAACTGTATACTGCAGCAC
GGTCGGTGCTTGCCTTGGCGAACCTCACCCATCACTAGTCTTCTCAGTAT
CTGCCCAGCGGGCATATTCGAATCACGATACCCCTTCGAAGGAGAAAAGC
CGGTCGTGTGTCGGGTGGTGGAAGAGGGACAAGAGTCCTTTCTCCCCCCA
GCCGCAGAACCTCTTTGACCGCCCACCGCCCCTCCCCTCAACCTCCCCGC
TGCTCGGTATAACGGCAGCCTCCCGTGCGAGCCCGCCGCCGCCGACATCA
TAGCACCGCAGATCACCAGCGAGAGCGCCAACACATTTATCAATGAGATC
AACTGTATACTGCAGCACGGTCGGTGCTTGCCTTGGCGAACCTCACCCAT
CACTAGTCTTCTCAGTATCTGCCCAGCGGGCATATTCGAATCACGATACC
CCTTCGAAGGAGAAAAGCCGGTCGTGTGTCGGGTGGTGGAAGAGGGACAA
GAGTCCTTTCTCCCCCCAGCCGCAGAACCTCTTTGA
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