mRNA_H-elongata_contig5852.13336.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5852.13336.1
Unique NamemRNA_H-elongata_contig5852.13336.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig5852.13336.1 vs. uniprot
Match: A0A6H5JK84_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK84_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 7.020e-18
Identity = 36/67 (53.73%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    1 QLVIWTASAKPYADTVINHIDPDGEYFSGRLYREVCVLYEGIYIKDLRRLGRQMESVVLLDDHMYSF 201
            +LV+WTAS K YAD +I+ +DP G+ F+ R YR+ C+ +  + +KDLRRLGR M +VVLLD+++YSF
Sbjct:  509 ELVVWTASGKSYADAIIDLLDPAGDIFAERFYRDSCLRHHNLCVKDLRRLGRPMNTVVLLDNYVYSF 575          
BLAST of mRNA_H-elongata_contig5852.13336.1 vs. uniprot
Match: D8LDB9_ECTSI (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDB9_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.770e-17
Identity = 35/67 (52.24%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    1 QLVIWTASAKPYADTVINHIDPDGEYFSGRLYREVCVLYEGIYIKDLRRLGRQMESVVLLDDHMYSF 201
            +LV+WTAS + YAD +I+ +DP G+ F+ R YR+ C+ +  + +KDLRRLGR M +VVLLD+++YSF
Sbjct:  466 ELVVWTASGRSYADAIIDLLDPAGDIFAERFYRDSCLRHHNLCVKDLRRLGRPMNTVVLLDNYVYSF 532          
BLAST of mRNA_H-elongata_contig5852.13336.1 vs. uniprot
Match: A0A1R2BPH8_9CILI (FCP1 homology domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BPH8_9CILI)

HSP 1 Score: 78.2 bits (191), Expect = 2.150e-15
Identity = 36/68 (52.94%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 QLVIWTASAKPYADTVINHIDPDGEYFSGRLYREVCVLYEGIYIKDLRRL-GRQMESVVLLDDHMYSF 201
            +++I+TAS K YAD V+NH+DP  EY + RLYRE C+L EG++IKDLR L  R++++ V++D+  YSF
Sbjct:  266 EVIIFTASHKYYADEVLNHLDPQNEYINYRLYRENCILAEGVHIKDLRILKDRKLKNTVIVDNCAYSF 333          
BLAST of mRNA_H-elongata_contig5852.13336.1 vs. uniprot
Match: A0A7S3JSF4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSF4_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.510e-14
Identity = 31/67 (46.27%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    1 QLVIWTASAKPYADTVINHIDPDGEYFSGRLYREVCVLYEGIYIKDLRRLGRQMESVVLLDDHMYSF 201
            ++V++TAS K YA T+++HIDP+  +F  RLYRE C   +G+Y+KDL RLGR +    ++D+ +Y F
Sbjct:  273 EIVVFTASHKAYAATLLDHIDPENIFFDHRLYREACSNVDGLYLKDLDRLGRDLSKTTIIDNTLYVF 339          
BLAST of mRNA_H-elongata_contig5852.13336.1 vs. uniprot
Match: A0A1D3D792_9EIME (Dullard family phosphatase domain-containing protein n=1 Tax=Cyclospora cayetanensis TaxID=88456 RepID=A0A1D3D792_9EIME)

HSP 1 Score: 74.3 bits (181), Expect = 5.950e-14
Identity = 33/67 (49.25%), Postives = 50/67 (74.63%), Query Frame = 1
Query:    1 QLVIWTASAKPYADTVINHIDPDGEYFSGRLYREVCVLYEGIYIKDLRRLGRQMESVVLLDDHMYSF 201
            ++V++TAS++ YAD +++ IDP     S RLYR+ C    G+YIKDLRRLGR+ +SV L+D+ ++SF
Sbjct:  846 EVVLFTASSQAYADKILDVIDPHKRLISYRLYRQHCSCISGVYIKDLRRLGREEQSVCLIDNSVFSF 912          
BLAST of mRNA_H-elongata_contig5852.13336.1 vs. uniprot
Match: A0A7M7MBM9_VARDE (FCP1 homology domain-containing protein n=3 Tax=Varroa TaxID=62624 RepID=A0A7M7MBM9_VARDE)

HSP 1 Score: 72.4 bits (176), Expect = 8.270e-14
Identity = 29/62 (46.77%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 QLVIWTASAKPYADTVINHIDPDGEYFSGRLYREVCVLYEGIYIKDLRRLGRQMESVVLLDD 186
            ++V++TAS   YAD +++ +DP+GE F  RLYR+ C  ++G+++KDL RLGR M  V+L+D+
Sbjct:  107 EVVVFTASLPFYADEILDDLDPNGEIFHHRLYRQHCSYFQGVFVKDLERLGRPMNQVILVDN 168          
BLAST of mRNA_H-elongata_contig5852.13336.1 vs. uniprot
Match: A0A7M7MHV8_VARDE (FCP1 homology domain-containing protein n=1 Tax=Varroa destructor TaxID=109461 RepID=A0A7M7MHV8_VARDE)

HSP 1 Score: 72.4 bits (176), Expect = 1.270e-13
Identity = 29/62 (46.77%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 QLVIWTASAKPYADTVINHIDPDGEYFSGRLYREVCVLYEGIYIKDLRRLGRQMESVVLLDD 186
            ++V++TAS   YAD +++ +DP+GE F  RLYR+ C  ++G+++KDL RLGR M  V+L+D+
Sbjct:  143 EVVVFTASLPFYADEILDDLDPNGEIFHHRLYRQHCSYFQGVFVKDLERLGRPMNQVILVDN 204          
BLAST of mRNA_H-elongata_contig5852.13336.1 vs. uniprot
Match: A0A507FKH1_9FUNG (FCP1 homology domain-containing protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FKH1_9FUNG)

HSP 1 Score: 72.0 bits (175), Expect = 2.720e-13
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 1
Query:    1 QLVIWTASAKPYADTVINHIDPDGEYFSGRLYREVCVLYEGIYIKDLRRLGRQMESVVLLDDHMYSF 201
            ++V++TAS   YA+ V+N IDP G     RLYRE C L+ G +IKDL +LGRQMES++LLD+   S+
Sbjct:  212 EIVVFTASVPEYANAVLNRIDP-GRRIRHRLYREHCKLFHGGWIKDLSKLGRQMESIILLDNCAVSY 277          
BLAST of mRNA_H-elongata_contig5852.13336.1 vs. uniprot
Match: A0A7S3DK09_9EUKA (Hypothetical protein n=4 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DK09_9EUKA)

HSP 1 Score: 72.4 bits (176), Expect = 2.790e-13
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    1 QLVIWTASAKPYADTVINHIDPDGEYFSGRLYREVCVLYEGIYIKDLRRLGRQMESVVLLDDHMYSF 201
            ++VI+TAS K YAD VI+ + PDG     RLYRE C  +EG+Y+KDL RLGR +   +++D+  +S+
Sbjct:  419 EVVIFTASLKHYADLVIDGLLPDGVEVHSRLYRESCTFHEGVYVKDLARLGRDVNRSIIVDNSPFSY 485          
BLAST of mRNA_H-elongata_contig5852.13336.1 vs. uniprot
Match: A0A1V9XHR7_9ACAR (CTD small phosphatase protein 2-like n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9XHR7_9ACAR)

HSP 1 Score: 71.2 bits (173), Expect = 3.180e-13
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = 1
Query:    1 QLVIWTASAKPYADTVINHIDPDGEYFSGRLYREVCVLYEGIYIKDLRRLGRQMESVVLLDD 186
            ++V++TAS   YAD +++ +DP GE F  RLYR+ C  ++G++IKDL RLGR M  V+L+D+
Sbjct:  120 EIVVFTASLPFYADGILDDLDPKGEIFHHRLYRQHCCYFQGVFIKDLERLGRPMGRVILVDN 181          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5852.13336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JK84_9PHAE7.020e-1853.73FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
D8LDB9_ECTSI1.770e-1752.24FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
A0A1R2BPH8_9CILI2.150e-1552.94FCP1 homology domain-containing protein n=1 Tax=St... [more]
A0A7S3JSF4_9STRA1.510e-1446.27Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A1D3D792_9EIME5.950e-1449.25Dullard family phosphatase domain-containing prote... [more]
A0A7M7MBM9_VARDE8.270e-1446.77FCP1 homology domain-containing protein n=3 Tax=Va... [more]
A0A7M7MHV8_VARDE1.270e-1346.77FCP1 homology domain-containing protein n=1 Tax=Va... [more]
A0A507FKH1_9FUNG2.720e-1352.24FCP1 homology domain-containing protein n=1 Tax=Ch... [more]
A0A7S3DK09_9EUKA2.790e-1347.76Hypothetical protein n=4 Tax=Palpitomonas bilix Ta... [more]
A0A1V9XHR7_9ACAR3.180e-1348.39CTD small phosphatase protein 2-like n=1 Tax=Tropi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5852contigH-elongata_contig5852:7937..8137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue1e-14
Seed eggNOG ortholog2880.D8LDB9
KEGG koko:K17616
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG5190@1,KOG1605@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930948.773139-CDS-H-elongata_contig5852:7936..81371622930948.773139-CDS-H-elongata_contig5852:7936..8137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5852 7937..8137 +
1691679636.7977655-CDS-H-elongata_contig5852:7936..81371691679636.7977655-CDS-H-elongata_contig5852:7936..8137Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5852 7937..8137 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5852.13336.1prot_H-elongata_contig5852.13336.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5852 7937..8137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5852.13336.1

>prot_H-elongata_contig5852.13336.1 ID=prot_H-elongata_contig5852.13336.1|Name=mRNA_H-elongata_contig5852.13336.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
QLVIWTASAKPYADTVINHIDPDGEYFSGRLYREVCVLYEGIYIKDLRRL
GRQMESVVLLDDHMYSF
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mRNA from alignment at H-elongata_contig5852:7937..8137+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5852.13336.1 ID=mRNA_H-elongata_contig5852.13336.1|Name=mRNA_H-elongata_contig5852.13336.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig5852:7937..8137+ (Himanthalia elongata Himel1 dioecious)
CAGCTGGTTATTTGGACGGCCTCGGCCAAGCCATATGCTGACACCGTAAT TAATCACATAGACCCCGATGGGGAGTACTTCTCGGGGCGCCTCTACCGCG AGGTGTGCGTTCTTTACGAAGGAATTTATATCAAAGACCTCCGGAGGCTG GGGCGCCAGATGGAGTCCGTGGTCTTGCTTGACGACCACATGTACAGTTT C
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Coding sequence (CDS) from alignment at H-elongata_contig5852:7937..8137+

>mRNA_H-elongata_contig5852.13336.1 ID=mRNA_H-elongata_contig5852.13336.1|Name=mRNA_H-elongata_contig5852.13336.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig5852:7937..8137+ (Himanthalia elongata Himel1 dioecious)
CAGCTGGTTATTTGGACGGCCTCGGCCAAGCCATATGCTGACACCGTAAT
TAATCACATAGACCCCGATGGGGAGTACTTCTCGGGGCGCCTCTACCGCG
AGGTGTGCGTTCTTTACGAAGGAATTTATATCAAAGACCTCCGGAGGCTG
GGGCGCCAGATGGAGTCCGTGGTCTTGCTTGACGACCACATGTACAGTTT
CCAGCTGGTTATTTGGACGGCCTCGGCCAAGCCATATGCTGACACCGTAA
TTAATCACATAGACCCCGATGGGGAGTACTTCTCGGGGCGCCTCTACCGC
GAGGTGTGCGTTCTTTACGAAGGAATTTATATCAAAGACCTCCGGAGGCT
GGGGCGCCAGATGGAGTCCGTGGTCTTGCTTGACGACCACATGTACAGTT
TC
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