mRNA_H-elongata_contig58396.13324.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58396.13324.1
Unique NamemRNA_H-elongata_contig58396.13324.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58396.13324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58396contigH-elongata_contig58396:1152..3452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2301
Cds size1395
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58396.13324.1prot_H-elongata_contig58396.13324.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58396 1223..2617 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930946.7923994-UTR-H-elongata_contig58396:1151..12221622930946.7923994-UTR-H-elongata_contig58396:1151..1222Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58396 1152..1222 +
1691679635.9562361-UTR-H-elongata_contig58396:1151..12221691679635.9562361-UTR-H-elongata_contig58396:1151..1222Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58396 1152..1222 +
1622930946.830965-UTR-H-elongata_contig58396:2617..34521622930946.830965-UTR-H-elongata_contig58396:2617..3452Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58396 2618..3452 +
1691679635.9867916-UTR-H-elongata_contig58396:2617..34521691679635.9867916-UTR-H-elongata_contig58396:2617..3452Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58396 2618..3452 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930946.812844-CDS-H-elongata_contig58396:1222..26171622930946.812844-CDS-H-elongata_contig58396:1222..2617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58396 1223..2617 +
1691679635.9743118-CDS-H-elongata_contig58396:1222..26171691679635.9743118-CDS-H-elongata_contig58396:1222..2617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58396 1223..2617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58396.13324.1

>prot_H-elongata_contig58396.13324.1 ID=prot_H-elongata_contig58396.13324.1|Name=mRNA_H-elongata_contig58396.13324.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=465bp
MATVFSNVCARDWCDNAAINGEAGSGRRSFSSKHALEGMVNVSVKVCADD
GCSKIGSFGKTGSKKQEYLAEHSLKRVVIVCKKKCASDGCSNIGSYGKAG
SKKREYCAKHALEGMVNYLSNMCAGDRCSKLASYGKAGSTKREYCAEHSL
EGMVNVSVKVCASEKCSKQASYGKYGSKKREYCNEHSLEGMVNVSKKICP
IDGCPKRPSYGKAGSNKQEYCAEHSSEGMINLSNKRCTVGGCSKLAYHGK
AGTSKREYCSEHALEGMVNIFTNICASDLCFKHASYGKAGSTKREYCVEH
SSEGMINLSNRRCTLGECSKLAYYGKAGSSKREYCAEHSLEGMVNVSVKR
CATKKCFKHASYGKAGSTKREYCVEHSLEGMVNVSCKRCTVDGCFKRASY
GKAGSRKRMYCAEHSLGGMVKLSSNTCVSDGCSKLASYGKAGSTKREYCA
KHSLEGMVNTSKNR*
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mRNA from alignment at H-elongata_contig58396:1152..3452+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58396.13324.1 ID=mRNA_H-elongata_contig58396.13324.1|Name=mRNA_H-elongata_contig58396.13324.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2301bp|location=Sequence derived from alignment at H-elongata_contig58396:1152..3452+ (Himanthalia elongata Himel1 dioecious)
AGAAAATATGTGCTGGTTATAGGTGCTCAAAGGGATCGAGTTACGACAAG
GCCGGGCGTGCTTTCGAGGGGATGGCCACCGTTTTTTCCAATGTATGTGC
CCGTGATTGGTGTGATAATGCAGCGATAAACGGCGAGGCCGGCAGCGGAA
GGCGAAGTTTCTCCTCCAAGCATGCCCTGGAAGGGATGGTCAATGTTTCG
GTTAAAGTGTGTGCTGATGATGGATGTTCTAAGATAGGTAGTTTCGGAAA
GACTGGAAGCAAGAAACAAGAGTACCTCGCCGAGCACTCATTGAAGAGGG
TGGTCATTGTTTGCAAGAAAAAGTGTGCCAGTGATGGATGTTCTAACATA
GGAAGCTACGGAAAGGCCGGAAGCAAGAAGCGAGAGTACTGCGCTAAGCA
TGCCTTGGAGGGAATGGTCAATTATTTGAGCAACATGTGTGCCGGTGATA
GATGTTCTAAACTAGCGAGCTACGGGAAGGCTGGCAGCACAAAGCGAGAA
TACTGCGCTGAGCACTCATTGGAGGGGATGGTCAATGTTTCTGTCAAAGT
GTGTGCCAGTGAAAAATGTTCTAAACAAGCAAGCTACGGGAAGTATGGAA
GCAAAAAGAGAGAGTACTGCAATGAGCACTCATTGGAGGGGATGGTAAAT
GTTTCGAAGAAAATATGTCCCATTGATGGATGTCCTAAGCGACCGAGCTA
CGGGAAAGCCGGAAGTAATAAACAAGAGTACTGCGCTGAGCACTCATCGG
AGGGAATGATCAATCTTTCGAACAAAAGGTGTACCGTTGGTGGATGTTCT
AAGCTAGCCTACCACGGGAAGGCCGGAACCTCGAAGCGTGAGTACTGCTC
TGAGCATGCCTTAGAGGGAATGGTCAATATTTTTACCAATATATGTGCTA
GTGATTTATGTTTTAAACACGCAAGCTACGGTAAGGCTGGAAGCACAAAG
CGAGAGTACTGCGTTGAGCACTCATCGGAGGGAATGATCAATCTTTCGAA
CAGAAGGTGTACCCTTGGTGAATGTTCTAAGCTAGCCTACTACGGGAAGG
CCGGAAGCTCGAAGCGAGAATATTGCGCTGAGCACTCATTGGAGGGGATG
GTCAATGTTTCGGTCAAAAGGTGTGCCACTAAAAAATGTTTTAAACACGC
GAGCTACGGTAAGGCTGGAAGCACAAAGCGAGAGTACTGCGTTGAGCACT
CATTAGAGGGGATGGTCAATGTTTCGTGCAAAAGGTGTACCGTTGATGGA
TGTTTTAAACGAGCGAGCTACGGAAAGGCCGGAAGCAGGAAACGGATGTA
TTGCGCGGAGCATTCCTTGGGAGGAATGGTCAAACTTTCGAGCAATACGT
GCGTCAGTGATGGATGTTCTAAACTAGCGAGCTACGGGAAGGCCGGAAGC
ACGAAGCGAGAGTATTGCGCGAAGCATTCCTTGGAGGGAATGGTCAATAC
TTCGAAAAATAGGTGACCTGTGATGGATGCTCTTACCTATCAAACTACGG
GAAGACTGGAAGCACAAAGGGAGAGTACTGTCCTGAGCCCTCGAATAAGG
GAATGAGCAATGTTTTGCACAAAATATGTGCCAGTGGTCGATATTTTAAA
CGAGCGAGCTACGGCAAGGCTGGAAGCAAGAAACGGGAGCTCTGTACCGA
GCACTTGTTGGAGGGGATGTCAGCATGAAATGCGAGTCCTCTTTAGGGGA
TGGTCAATGTTTTGAAGAGAAGTTGTGCGGGGGATGGATGCACTAAAATA
CCTCCCTGTTAGGAGACCGGCGGCGCGAAGCGGGATTAGTACGACGCAAA
ACATGCTATTGAGATAATGGTGTTTGTCGTCCCACACAACAGGAAACGAG
TGCGGAAGATCGATACGTCGCCAGTATCCGTCTCGAAGGGGTGTATAACC
GATAATAAGGTTATAGCCCCTTTTCAGAGGCTGTACTAGATGTTGTTTTG
AGGAAGTCAGAGGTATCAGTAGCTGAATCCAAGTATGTTTGTTTTGCATG
TTTCATTGTGCTAAGAAGATGTGGATGATTGGTCTACTGGCGAATGGGAG
CGGTGACATTGTTATATTCAGCTGACCACAAGCTGGGTGTAACCAAATCG
GGTTTATTTCCACTCTTTTATAGGTGATTACCACACATTTTTGGAGCACG
AACGAATATTCGTATTGTTCGAATTAGAAGAGCGTTGATTTAAAAGTCAA
AGCATTGCACAACCAGCGTACATAAAGGTAGTAACTGGGTTAGTTCAGGG
AGAGATAACATGAGTCACAAATGCCAAATCCACAACATTGACGGGCCGGA
C
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Coding sequence (CDS) from alignment at H-elongata_contig58396:1152..3452+

>mRNA_H-elongata_contig58396.13324.1 ID=mRNA_H-elongata_contig58396.13324.1|Name=mRNA_H-elongata_contig58396.13324.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2790bp|location=Sequence derived from alignment at H-elongata_contig58396:1152..3452+ (Himanthalia elongata Himel1 dioecious)
ATGGCCACCGTTTTTTCCAATGTATGTGCCCGTGATTGGTGTGATAATGC
AGCGATAAACGGCGAGGCCGGCAGCGGAAGGCGAAGTTTCTCCTCCAAGC
ATGCCCTGGAAGGGATGGTCAATGTTTCGGTTAAAGTGTGTGCTGATGAT
GGATGTTCTAAGATAGGTAGTTTCGGAAAGACTGGAAGCAAGAAACAAGA
GTACCTCGCCGAGCACTCATTGAAGAGGGTGGTCATTGTTTGCAAGAAAA
AGTGTGCCAGTGATGGATGTTCTAACATAGGAAGCTACGGAAAGGCCGGA
AGCAAGAAGCGAGAGTACTGCGCTAAGCATGCCTTGGAGGGAATGGTCAA
TTATTTGAGCAACATGTGTGCCGGTGATAGATGTTCTAAACTAGCGAGCT
ACGGGAAGGCTGGCAGCACAAAGCGAGAATACTGCGCTGAGCACTCATTG
GAGGGGATGGTCAATGTTTCTGTCAAAGTGTGTGCCAGTGAAAAATGTTC
TAAACAAGCAAGCTACGGGAAGTATGGAAGCAAAAAGAGAGAGTACTGCA
ATGAGCACTCATTGGAGGGGATGGTAAATGTTTCGAAGAAAATATGTCCC
ATTGATGGATGTCCTAAGCGACCGAGCTACGGGAAAGCCGGAAGTAATAA
ACAAGAGTACTGCGCTGAGCACTCATCGGAGGGAATGATCAATCTTTCGA
ACAAAAGGTGTACCGTTGGTGGATGTTCTAAGCTAGCCTACCACGGGAAG
GCCGGAACCTCGAAGCGTGAGTACTGCTCTGAGCATGCCTTAGAGGGAAT
GGTCAATATTTTTACCAATATATGTGCTAGTGATTTATGTTTTAAACACG
CAAGCTACGGTAAGGCTGGAAGCACAAAGCGAGAGTACTGCGTTGAGCAC
TCATCGGAGGGAATGATCAATCTTTCGAACAGAAGGTGTACCCTTGGTGA
ATGTTCTAAGCTAGCCTACTACGGGAAGGCCGGAAGCTCGAAGCGAGAAT
ATTGCGCTGAGCACTCATTGGAGGGGATGGTCAATGTTTCGGTCAAAAGG
TGTGCCACTAAAAAATGTTTTAAACACGCGAGCTACGGTAAGGCTGGAAG
CACAAAGCGAGAGTACTGCGTTGAGCACTCATTAGAGGGGATGGTCAATG
TTTCGTGCAAAAGGTGTACCGTTGATGGATGTTTTAAACGAGCGAGCTAC
GGAAAGGCCGGAAGCAGGAAACGGATGTATTGCGCGGAGCATTCCTTGGG
AGGAATGGTCAAACTTTCGAGCAATACGTGCGTCAGTGATGGATGTTCTA
AACTAGCGAGCTACGGGAAGGCCGGAAGCACGAAGCGAGAGTATTGCGCG
AAGCATTCCTTGGAGGGAATGGTCAATACTTCGAAAAATAGGTGAATGGC
CACCGTTTTTTCCAATGTATGTGCCCGTGATTGGTGTGATAATGCAGCGA
TAAACGGCGAGGCCGGCAGCGGAAGGCGAAGTTTCTCCTCCAAGCATGCC
CTGGAAGGGATGGTCAATGTTTCGGTTAAAGTGTGTGCTGATGATGGATG
TTCTAAGATAGGTAGTTTCGGAAAGACTGGAAGCAAGAAACAAGAGTACC
TCGCCGAGCACTCATTGAAGAGGGTGGTCATTGTTTGCAAGAAAAAGTGT
GCCAGTGATGGATGTTCTAACATAGGAAGCTACGGAAAGGCCGGAAGCAA
GAAGCGAGAGTACTGCGCTAAGCATGCCTTGGAGGGAATGGTCAATTATT
TGAGCAACATGTGTGCCGGTGATAGATGTTCTAAACTAGCGAGCTACGGG
AAGGCTGGCAGCACAAAGCGAGAATACTGCGCTGAGCACTCATTGGAGGG
GATGGTCAATGTTTCTGTCAAAGTGTGTGCCAGTGAAAAATGTTCTAAAC
AAGCAAGCTACGGGAAGTATGGAAGCAAAAAGAGAGAGTACTGCAATGAG
CACTCATTGGAGGGGATGGTAAATGTTTCGAAGAAAATATGTCCCATTGA
TGGATGTCCTAAGCGACCGAGCTACGGGAAAGCCGGAAGTAATAAACAAG
AGTACTGCGCTGAGCACTCATCGGAGGGAATGATCAATCTTTCGAACAAA
AGGTGTACCGTTGGTGGATGTTCTAAGCTAGCCTACCACGGGAAGGCCGG
AACCTCGAAGCGTGAGTACTGCTCTGAGCATGCCTTAGAGGGAATGGTCA
ATATTTTTACCAATATATGTGCTAGTGATTTATGTTTTAAACACGCAAGC
TACGGTAAGGCTGGAAGCACAAAGCGAGAGTACTGCGTTGAGCACTCATC
GGAGGGAATGATCAATCTTTCGAACAGAAGGTGTACCCTTGGTGAATGTT
CTAAGCTAGCCTACTACGGGAAGGCCGGAAGCTCGAAGCGAGAATATTGC
GCTGAGCACTCATTGGAGGGGATGGTCAATGTTTCGGTCAAAAGGTGTGC
CACTAAAAAATGTTTTAAACACGCGAGCTACGGTAAGGCTGGAAGCACAA
AGCGAGAGTACTGCGTTGAGCACTCATTAGAGGGGATGGTCAATGTTTCG
TGCAAAAGGTGTACCGTTGATGGATGTTTTAAACGAGCGAGCTACGGAAA
GGCCGGAAGCAGGAAACGGATGTATTGCGCGGAGCATTCCTTGGGAGGAA
TGGTCAAACTTTCGAGCAATACGTGCGTCAGTGATGGATGTTCTAAACTA
GCGAGCTACGGGAAGGCCGGAAGCACGAAGCGAGAGTATTGCGCGAAGCA
TTCCTTGGAGGGAATGGTCAATACTTCGAAAAATAGGTGA
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