mRNA_H-elongata_contig58278.13309.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58278.13309.1
Unique NamemRNA_H-elongata_contig58278.13309.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig58278.13309.1 vs. uniprot
Match: A0A1D6NUI8_MAIZE (Pre-mRNA-processing-splicing factor 8A n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6NUI8_MAIZE)

HSP 1 Score: 395 bits (1014), Expect = 3.880e-136
Identity = 176/195 (90.26%), Postives = 188/195 (96.41%), Query Frame = 1 
Query:    1 DLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWIFFLRGVVPLIERWLGNLLARQFEGRHSKGIAKSVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPAPIENMILRYVKAKADWWTNIAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLKVLLYT 585
            DLKHLIYYRFNTGPVGKGPGCGFWAP WRVW+FFLRG+VPL+ERWLGNLLARQFEGRHSKG+AK+VTKQRVESHFDLELRAAVMHD+LD MPEG+K NK+RTILQHLSEAWRCWKANIPWKVPGLP PIENMILRYVK+KADWWTN+AHYNRERIRRGATVDKTVC+KNLGRLTRLWLKAEQERQHNYLK +  T
Sbjct:  195 DLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDVAQT 389
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BLAST of mRNA_H-elongata_contig58278.13309.1 vs. uniprot
Match: A0A3L6V125_9STRA (PROCN domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6V125_9STRA)

HSP 1 Score: 402 bits (1032), Expect = 2.700e-135
Identity = 181/190 (95.26%), Postives = 189/190 (99.47%), Query Frame = 1 
Query:    1 DLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWIFFLRGVVPLIERWLGNLLARQFEGRHSKGIAKSVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPAPIENMILRYVKAKADWWTNIAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK 570
            DLKHLIYYRFNTGPVGKGPGCGFWAP WRVW+FFLRG+VPL+ERWLGNLLARQFEGRHSKGIAK+VTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLP+PIENMILRYVK+KADWWTN+AHYNRERI+RGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK
Sbjct:  278 DLKHLIYYRFNTGPVGKGPGCGFWAPAWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGIAKTVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPSPIENMILRYVKSKADWWTNVAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK 467
[Close]
BLAST of mRNA_H-elongata_contig58278.13309.1 vs. uniprot
Match: A0A7S0V611_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V611_9CRYP)

HSP 1 Score: 397 bits (1019), Expect = 1.340e-133
Identity = 179/190 (94.21%), Postives = 187/190 (98.42%), Query Frame = 1 
Query:    1 DLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWIFFLRGVVPLIERWLGNLLARQFEGRHSKGIAKSVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPAPIENMILRYVKAKADWWTNIAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK 570
            DLKHLIYYRFNTGPVGKGPG GFWAPGWRVW+FFLRGVVPL+ERWLGNLLARQFEGRHSKG+AK+VTKQRVESH+DLELRAAVMHDILDMMPEGVK NKS+TILQHLSEAWRCWKANIPWKVPG+P PIENMILRYVKAKADWWTN+AHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK
Sbjct:  110 DLKHLIYYRFNTGPVGKGPGVGFWAPGWRVWLFFLRGVVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHYDLELRAAVMHDILDMMPEGVKQNKSKTILQHLSEAWRCWKANIPWKVPGMPIPIENMILRYVKAKADWWTNVAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK 299
[Close]
BLAST of mRNA_H-elongata_contig58278.13309.1 vs. uniprot
Match: A0A7S3ARS0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ARS0_9EUKA)

HSP 1 Score: 395 bits (1015), Expect = 2.810e-133
Identity = 180/190 (94.74%), Postives = 187/190 (98.42%), Query Frame = 1 
Query:    1 DLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWIFFLRGVVPLIERWLGNLLARQFEGRHSKGIAKSVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPAPIENMILRYVKAKADWWTNIAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK 570
            DLKHLIYYRFNTGPVGKGPGCG WAPGWRVW+FFLRGVVPL+ERWLGNLLARQFEGR SKGIAK+VTKQRVESH+DLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPG+PAPIENMILRYVK+KADWWTN+AHYNRERIRRGATVDKTV KKNLGRLTRLWLKAEQERQHNYLK
Sbjct:   14 DLKHLIYYRFNTGPVGKGPGCGIWAPGWRVWLFFLRGVVPLLERWLGNLLARQFEGRSSKGIAKTVTKQRVESHYDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGMPAPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVTKKNLGRLTRLWLKAEQERQHNYLK 203
[Close]
BLAST of mRNA_H-elongata_contig58278.13309.1 vs. uniprot
Match: A0A7L3HCZ3_9PASS (PRP8 factor (Fragment) n=4 Tax=Neognathae TaxID=8825 RepID=A0A7L3HCZ3_9PASS)

HSP 1 Score: 400 bits (1027), Expect = 4.160e-133
Identity = 180/193 (93.26%), Postives = 189/193 (97.93%), Query Frame = 1 
Query:    1 DLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWIFFLRGVVPLIERWLGNLLARQFEGRHSKGIAKSVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPAPIENMILRYVKAKADWWTNIAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLKVLL 579
            DLKHLIYYRFNTGPVGKGPGCGFWAPGWRVW+FF+RG+ PL+ERWLGNLLARQFEGRHSKG+AK+VTKQRVESHFDLELRAAVMHDILDMMPEG+K NK+RTILQHLSEAWRCWKANIPWKVPGLP PIENMILRYVKAKADWWTN AHYNRERIRRGATVDKTVCKKNLGRLTRL+LKAEQERQHNYLKVLL
Sbjct:  444 DLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKVLL 636
[Close]
BLAST of mRNA_H-elongata_contig58278.13309.1 vs. uniprot
Match: A0A2R7WFD6_ONCFA (PROCN domain-containing protein n=1 Tax=Oncopeltus fasciatus TaxID=7536 RepID=A0A2R7WFD6_ONCFA)

HSP 1 Score: 382 bits (982), Expect = 1.710e-131
Identity = 171/194 (88.14%), Postives = 184/194 (94.85%), Query Frame = 1 
Query:    1 DLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWIFFLRGVVPLIERWLGNLLARQFEGRHSKGIAKSVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPAPIENMILRYVKAKADWWTNIAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLKVLLY 582
            DLKHLIYYRFNTGPVGKGPGCG WAPGWRVW+FF+RG+ PL+ERWLGNLL+RQFEGRHSKG+AK+VTKQRVESHFDLELRA+VMHDI+DMMPEG+K NK+RTILQHLSEAWR WKAN PWKVPGLP PIENMILRYVK KADWWTN AHYNRERIRRGATVDKTVCKKNLGRLTRL+LKAEQERQHNYLKV  +
Sbjct:  172 DLKHLIYYRFNTGPVGKGPGCGIWAPGWRVWLFFMRGITPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHFDLELRASVMHDIVDMMPEGIKQNKARTILQHLSEAWRNWKANTPWKVPGLPIPIENMILRYVKMKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKVAYF 365
[Close]
BLAST of mRNA_H-elongata_contig58278.13309.1 vs. uniprot
Match: A0A3L6VBU4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VBU4_9STRA)

HSP 1 Score: 402 bits (1032), Expect = 2.280e-131
Identity = 181/190 (95.26%), Postives = 189/190 (99.47%), Query Frame = 1 
Query:    1 DLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWIFFLRGVVPLIERWLGNLLARQFEGRHSKGIAKSVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPAPIENMILRYVKAKADWWTNIAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK 570
            DLKHLIYYRFNTGPVGKGPGCGFWAP WRVW+FFLRG+VPL+ERWLGNLLARQFEGRHSKGIAK+VTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLP+PIENMILRYVK+KADWWTN+AHYNRERI+RGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK
Sbjct:  635 DLKHLIYYRFNTGPVGKGPGCGFWAPAWRVWLFFLRGIVPLLERWLGNLLARQFEGRHSKGIAKTVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPSPIENMILRYVKSKADWWTNVAHYNRERIKRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK 824
[Close]
BLAST of mRNA_H-elongata_contig58278.13309.1 vs. uniprot
Match: A0A7S0F341_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0F341_9EUKA)

HSP 1 Score: 397 bits (1021), Expect = 2.620e-131
Identity = 181/190 (95.26%), Postives = 188/190 (98.95%), Query Frame = 1 
Query:    1 DLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWIFFLRGVVPLIERWLGNLLARQFEGRHSKGIAKSVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPAPIENMILRYVKAKADWWTNIAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK 570
            DLKHLIYYRFNTGPVGKGPGCGFWAPGWRVW+FFLRGVVPL+ERWLGNLLARQFEGR SKGIAK+VTKQRVESH+DLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPG+PAPIENMILRYVK+KADWWTN+AHYNRERIRRGATVDKTV KKNLGRLTRLWLKAEQERQHNYLK
Sbjct:  623 DLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFLRGVVPLLERWLGNLLARQFEGRSSKGIAKTVTKQRVESHYDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGMPAPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDKTVTKKNLGRLTRLWLKAEQERQHNYLK 812
[Close]
BLAST of mRNA_H-elongata_contig58278.13309.1 vs. uniprot
Match: A0A6G3MJ01_HENSL (Pre-mRNA-processing-splicing factor 8 (Trinotate prediction) (Fragment) n=1 Tax=Henneguya salminicola TaxID=69463 RepID=A0A6G3MJ01_HENSL)

HSP 1 Score: 377 bits (969), Expect = 2.730e-131
Identity = 167/190 (87.89%), Postives = 182/190 (95.79%), Query Frame = 1 
Query:    1 DLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWIFFLRGVVPLIERWLGNLLARQFEGRHSKGIAKSVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPAPIENMILRYVKAKADWWTNIAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLK 570
            DLKHLIYYRFNTGPVGKGPG GFW P WRVW+FF+RG+VPL+ERWLGNLLARQFEGR SKG+AK++TKQRVESH+DLELRAAVMHDI DMMPEG++ NK+RTILQHLSEAWRCWKANIPWK+PGLP P+ENMILRYVKAKADWWTN +HYNRERIRRGATVDKTVCKKNLGRLTRL+LKAEQERQHNYLK
Sbjct:   49 DLKHLIYYRFNTGPVGKGPGMGFWGPSWRVWVFFMRGIVPLLERWLGNLLARQFEGRLSKGVAKTITKQRVESHYDLELRAAVMHDICDMMPEGIRQNKARTILQHLSEAWRCWKANIPWKIPGLPIPVENMILRYVKAKADWWTNTSHYNRERIRRGATVDKTVCKKNLGRLTRLFLKAEQERQHNYLK 238
[Close]
BLAST of mRNA_H-elongata_contig58278.13309.1 vs. uniprot
Match: A0A850XJ11_PIACA (PRP8 factor (Fragment) n=1 Tax=Piaya cayana TaxID=33601 RepID=A0A850XJ11_PIACA)

HSP 1 Score: 400 bits (1027), Expect = 2.970e-131
Identity = 180/193 (93.26%), Postives = 189/193 (97.93%), Query Frame = 1 
Query:    1 DLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWIFFLRGVVPLIERWLGNLLARQFEGRHSKGIAKSVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKSRTILQHLSEAWRCWKANIPWKVPGLPAPIENMILRYVKAKADWWTNIAHYNRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLKVLL 579
            DLKHLIYYRFNTGPVGKGPGCGFWAPGWRVW+FF+RG+ PL+ERWLGNLLARQFEGRHSKG+AK+VTKQRVESHFDLELRAAVMHDILDMMPEG+K NK+RTILQHLSEAWRCWKANIPWKVPGLP PIENMILRYVKAKADWWTN AHYNRERIRRGATVDKTVCKKNLGRLTRL+LKAEQERQHNYLKVLL
Sbjct:  242 DLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKVLL 434
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58278.13309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1D6NUI8_MAIZE3.880e-13690.26Pre-mRNA-processing-splicing factor 8A n=2 Tax=Zea... [more]
A0A3L6V125_9STRA2.700e-13595.26PROCN domain-containing protein (Fragment) n=1 Tax... [more]
A0A7S0V611_9CRYP1.340e-13394.21Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S3ARS0_9EUKA2.810e-13394.74Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7L3HCZ3_9PASS4.160e-13393.26PRP8 factor (Fragment) n=4 Tax=Neognathae TaxID=88... [more]
A0A2R7WFD6_ONCFA1.710e-13188.14PROCN domain-containing protein n=1 Tax=Oncopeltus... [more]
A0A3L6VBU4_9STRA2.280e-13195.26Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A7S0F341_9EUKA2.620e-13195.26Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A6G3MJ01_HENSL2.730e-13187.89Pre-mRNA-processing-splicing factor 8 (Trinotate p... [more]
A0A850XJ11_PIACA2.970e-13193.26PRP8 factor (Fragment) n=1 Tax=Piaya cayana TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58278contigH-elongata_contig58278:344..3260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score409.8
Seed ortholog evalue7e-112
Seed eggNOG ortholog2880.D8LLJ8
KEGG koko:K12856
KEGG Pathwayko03040,map03040
KEGG ModuleM00354,M00355
GOsGO:0000244,GO:0000375,GO:0000377,GO:0000386,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0017069,GO:0017070,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030619,GO:0030620,GO:0030623,GO:0032991,GO:0034622,GO:0034641,GO:0036002,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097157,GO:0097159,GO:0097525,GO:0120114,GO:0140098,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.U5 snRNA binding
EggNOG OGsCOG5178@1,KOG1795@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Hectar predicted targeting categoryother localisation
Exons4
Model size591
Cds size591
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58278.13309.1prot_H-elongata_contig58278.13309.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58278 344..3260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930945.1976016-CDS-H-elongata_contig58278:343..5131622930945.1976016-CDS-H-elongata_contig58278:343..513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58278 344..513 +
1691679635.395921-CDS-H-elongata_contig58278:343..5131691679635.395921-CDS-H-elongata_contig58278:343..513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58278 344..513 +
1622930945.2136629-CDS-H-elongata_contig58278:1091..12361622930945.2136629-CDS-H-elongata_contig58278:1091..1236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58278 1092..1236 +
1691679635.41279-CDS-H-elongata_contig58278:1091..12361691679635.41279-CDS-H-elongata_contig58278:1091..1236Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58278 1092..1236 +
1622930945.2424607-CDS-H-elongata_contig58278:1968..20731622930945.2424607-CDS-H-elongata_contig58278:1968..2073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58278 1969..2073 +
1691679635.4219382-CDS-H-elongata_contig58278:1968..20731691679635.4219382-CDS-H-elongata_contig58278:1968..2073Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58278 1969..2073 +
1622930945.2581873-CDS-H-elongata_contig58278:3089..32601622930945.2581873-CDS-H-elongata_contig58278:3089..3260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58278 3090..3260 +
1691679635.4297602-CDS-H-elongata_contig58278:3089..32601691679635.4297602-CDS-H-elongata_contig58278:3089..3260Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58278 3090..3260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58278.13309.1

>prot_H-elongata_contig58278.13309.1 ID=prot_H-elongata_contig58278.13309.1|Name=mRNA_H-elongata_contig58278.13309.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=197bp
DLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWIFFLRGVVPLIERWLGNLL
ARQFEGRHSKGIAKSVTKQRVESHFDLELRAAVMHDILDMMPEGVKANKS
RTILQHLSEAWRCWKANIPWKVPGLPAPIENMILRYVKAKADWWTNIAHY
NRERIRRGATVDKTVCKKNLGRLTRLWLKAEQERQHNYLKVLLYTR*
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mRNA from alignment at H-elongata_contig58278:344..3260+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58278.13309.1 ID=mRNA_H-elongata_contig58278.13309.1|Name=mRNA_H-elongata_contig58278.13309.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2917bp|location=Sequence derived from alignment at H-elongata_contig58278:344..3260+ (Himanthalia elongata Himel1 dioecious)
GACCTCAAGCATTTGATCTACTACCGCTTCAACACGGGGCCCGTCGGCAA
GGGTCCCGGCTGCGGCTTCTGGGCCCCCGGCTGGCGCGTGTGGATATTCT
TCTTAAGGGGGGTGGTGCCGTTGATCGAGCGCTGGCTGGGCAACCTGCTC
GCGAGGCAGTTCGAAGGGAGGTACGTTCATGTTATATTAGTTGAGATATG
AAAATGTATGTATGTATGTATGCATGGATTGATTAATCATTGTGAAATTT
TGATGGTATTTTGTAGGTATGCGATTGTAAGCCTGGAAAGTCATTCAGTG
TGGCAAGGAAAGAGAGCCAGTTTCGTTGCATTTTAGCTTTTCAGCAAATG
AGTGAAGTTCTTGCGCTTTTCTCTGAACTACCTTGTTGTTGTTGGTCACA
CATTTAGCAGAGTAAGATCGACCAGATTTGGTTGCCTTCTGCTCGTGGTC
AGCTTGAACAGGAAAAAATCATTTTCCCCTGTCCCCGTTCGCGCCTGATA
ATTTGGTCTGGCGAAACAGGTTCAGCACTCCCGTCCCTATCGTTTTTTTG
TGTTTTTTTCTTTTTCAAATCCTTCTTTATATTTGAAATCATGCTGATGA
TTAAGCTTTAACCTTCCCCCGTATCCTCTAATAATGTGTGATATCGTCAA
ATTATATATCCTGCCTATCACCCTCGTGTCGTTCTCTAACCTATCTCCCC
CCGTCTTTTTGTCCCCTTCTTTCAACCTTGTGTGTGTGGCGGAGACAGGC
ACTCGAAGGGTATCGCCAAGTCCGTGACGAAGCAGCGAGTGGAGTCACAC
TTCGATCTCGAGCTGCGAGCGGCCGTGATGCACGACATCTTGGACATGAT
GCCCGAGGGGGTGAAGGCCAACAAGTCGCGCACCATCCTGCAGGTACAGT
ACATCCCGGCGGTGATCGAGAGAAGCTTTACATGTGGCGACTCGGTTTGC
CAGCTAAACTATCGTGGGATTGTGTTATTGTGATAATCCGGCACACGTAT
GATACGTTTGAGGGGGCATTATTCCTGCTTGGTCCTCCCCCCCCCCTCCC
CCGTCAGTGTCGTTTTGTTTTTCGCGGCATTTTGTCCATGATTTTTGCTA
TTAATAGTATTGCCTCCTACGATGGTGTGTCGCTTCGAATATTTTCTAAC
ATTTTTTTCCTAACATTTCTGCGGTTTTGTAAGTCTTGGACGGCGTGCTC
AGCACCTATAATAGTGCGTGTGGCGTCGAACTATCACCCAGCCCAAAATA
TGGTGCAATTTCATGCTAAGTAAAACAGCGGTCTCTCTGAAACCTATGTA
TGGTGGGCTGAGACAACGAAACCACCCATGGGGTGTAGAAAGGGTCCTAA
AATATAGATAATGATGCCTAGGTGATGGTTCGACCTAAACACCCATGAGG
TGTAAATAGCTGCGCCCCGTCGATCAAGGCTTTTTATAGCCATATGCATG
ATAACCTCGGAGCTGTTCTTGTCTCCCCTTCTTCAACCGTGCTTCTCCCG
ATGACGCATGATCAGGCACAAAAACATGGGTCCGATCCCCCCACCCCCCA
CCCCCCACCCCATCCCCTCTCCCGCCTCCTATTCTGCTGAACACCATCAC
TGTTTTTTTGTGTGTCTTTTTACAGCATCTAAGCGAAGCATGGCGGTGCT
GGAAGGCCAACATTCCGTGGAAAGTGCCGGGGCTACCGGCCCCAATCGAA
AACATGATTCTGCGCTACGTCAAGGCGAAGGTGGACAAGAGACGATTTTG
TGTATAGTATGTACTATTTTTTGTCGAAATCCAAAATCGTTTCTTGTCCA
CCCTCATCCCATTAAAAATATTGAAGAAAATATCTAGCGATATCAATAAA
AGAAAAATAATAATGAGTTGAAGGCGTGGATGTTTAAAATGAGCTCATAT
AGATATTTTAATAACAATGGTATTGTTATCGTGCTTTTCTTTATACATAT
ATATATATATATATATGTATTTGTCCGTCATAACCTTCGTCGATTTATTT
ACTGTAATATAGGGTTTCCACGTGTTACAAACAATGCACGAAAAACATGC
ACTAAAGTGAATAAGAACCTAAACTAGTCTAGGTTTCTCTTCACTTTCGT
GCATTCTTTTCATACACTTTTCCTTTTTTATCGCCACCCCTGGTACCAAA
TACTGGCGCAGTCTGCGTATCTTGACAAAAACAAAATAGACTCTTTTCTT
AACATGTACTTGTCTATATGTATTATATAAATAAAAACGAAATCGACTCT
TTTTCTTAGCACATGTACTTGTACGTATATATTCAAGCATCTAAATATAT
ATACTCTATATTTATATATATATTTAAGAGAGTAAATATATATATATATA
TATTTATTACTTCATATATATTACATATATATTTGTTTTGAAAGGGATAT
ATTTTTTAGTGTATTAACCCCTATGGAACTCGATCTGTTTTTTAAATATT
AAATTCAATATAAAAATTGAAATCCAGTTCGTCCTTTCTTGGGATATTTA
TTTTTTAAGAGATAGTTGTCAGGTTTTCCAAAAAGTGCTTCATATGACAC
ATGTAGCTATTTAATATAGGTTTTCCACGTGTTACAAAAAGTCCATGAAA
AAAATGCACCAAAGTGAACAGGAACCTAAACTAGTCTGCCGTAGGTTCCT
GTTCACTTTGGTGCATTGTTTGTGACACGTGGAAACCCTATAATAGCTCT
GTTTTTATCTTCTTTATAAAAATATTTTCTTCTCTTGTTTGCCCAGGCGG
ATTGGTGGACGAACATCGCGCACTACAATCGCGAGCGGATCCGGCGCGGT
GCCACCGTTGATAAAACAGTTTGCAAGAAGAACCTCGGCAGGCTTACCCG
GCTCTGGCTCAAGGCCGAGCAGGAACGGCAGCACAACTACCTCAAGGTAC
TGTTATACACTCGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig58278:344..3260+

>mRNA_H-elongata_contig58278.13309.1 ID=mRNA_H-elongata_contig58278.13309.1|Name=mRNA_H-elongata_contig58278.13309.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1182bp|location=Sequence derived from alignment at H-elongata_contig58278:344..3260+ (Himanthalia elongata Himel1 dioecious)
GACCTCAAGCATTTGATCTACTACCGCTTCAACACGGGGCCCGTCGGCAA
GGGTCCCGGCTGCGGCTTCTGGGCCCCCGGCTGGCGCGTGTGGATATTCT
TCTTAAGGGGGGTGGTGCCGTTGATCGAGCGCTGGCTGGGCAACCTGCTC
GCGAGGCAGTTCGAAGGGAGGACCTCAAGCATTTGATCTACTACCGCTTC
AACACGGGGCCCGTCGGCAAGGGTCCCGGCTGCGGCTTCTGGGCCCCCGG
CTGGCGCGTGTGGATATTCTTCTTAAGGGGGGTGGTGCCGTTGATCGAGC
GCTGGCTGGGCAACCTGCTCGCGAGGCAGTTCGAAGGGAGGCACTCGAAG
GGTATCGCCAAGTCCGTGACGAAGCAGCGAGTGGAGTCACACTTCGATCT
CGAGCTGCGAGCGGCCGTGATGCACGACATCTTGGACATGATGCCCGAGG
GGGTGAAGGCCAACAAGTCGCGCACCATCCTGCAGGCACTCGAAGGGTAT
CGCCAAGTCCGTGACGAAGCAGCGAGTGGAGTCACACTTCGATCTCGAGC
TGCGAGCGGCCGTGATGCACGACATCTTGGACATGATGCCCGAGGGGGTG
AAGGCCAACAAGTCGCGCACCATCCTGCAGCATCTAAGCGAAGCATGGCG
GTGCTGGAAGGCCAACATTCCGTGGAAAGTGCCGGGGCTACCGGCCCCAA
TCGAAAACATGATTCTGCGCTACGTCAAGGCGAAGCATCTAAGCGAAGCA
TGGCGGTGCTGGAAGGCCAACATTCCGTGGAAAGTGCCGGGGCTACCGGC
CCCAATCGAAAACATGATTCTGCGCTACGTCAAGGCGAAGGCGGATTGGT
GGACGAACATCGCGCACTACAATCGCGAGCGGATCCGGCGCGGTGCCACC
GTTGATAAAACAGTTTGCAAGAAGAACCTCGGCAGGCTTACCCGGCTCTG
GCTCAAGGCCGAGCAGGAACGGCAGCACAACTACCTCAAGGTACTGTTAT
ACACTCGGTAAGCGGATTGGTGGACGAACATCGCGCACTACAATCGCGAG
CGGATCCGGCGCGGTGCCACCGTTGATAAAACAGTTTGCAAGAAGAACCT
CGGCAGGCTTACCCGGCTCTGGCTCAAGGCCGAGCAGGAACGGCAGCACA
ACTACCTCAAGGTACTGTTATACACTCGGTAA
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