mRNA_H-elongata_contig58225.13303.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig58225.13303.1 vs. uniprot
Match: D8LK79_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK79_ECTSI) HSP 1 Score: 129 bits (324), Expect = 1.130e-32 Identity = 71/107 (66.36%), Postives = 82/107 (76.64%), Query Frame = 1
Query: 1 LMAQSHECVVAVTERLQKMGIAGHQTTAGAERQVDQAKFIMDSLKIKLEEMFGGADQEHPSLAMVGECMDMFRQAAELYSAAGDPRHEEVLAQLHEFLQQPVVIAVL 321
L QS+ECV AVTERL+KMGIAGHQTTAGAERQVD A +M +L K E FG +E P L +V ECMD+FRQAAELYSAA DPRHEEVLA +H FLQ+ V++ L
Sbjct: 335 LTPQSYECVQAVTERLEKMGIAGHQTTAGAERQVDHASSLMAALGRK-EAQFGV--RERPDLTLVEECMDLFRQAAELYSAADDPRHEEVLAHMHRFLQREDVLSAL 438
BLAST of mRNA_H-elongata_contig58225.13303.1 vs. uniprot
Match: A0A6H5KXF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXF8_9PHAE) HSP 1 Score: 129 bits (323), Expect = 1.760e-32 Identity = 70/107 (65.42%), Postives = 82/107 (76.64%), Query Frame = 1
Query: 1 LMAQSHECVVAVTERLQKMGIAGHQTTAGAERQVDQAKFIMDSLKIKLEEMFGGADQEHPSLAMVGECMDMFRQAAELYSAAGDPRHEEVLAQLHEFLQQPVVIAVL 321
L QS+ECV AVTERL+KMGIAGHQTTAGAER+VD A +M +L K E FG +E P L +V ECMD+FRQAAELYSAA DPRHEEVLA +H FLQ+ V++ L
Sbjct: 363 LTPQSYECVKAVTERLEKMGIAGHQTTAGAERRVDHASSLMAALGRK-EAQFGA--RERPDLTLVEECMDLFRQAAELYSAADDPRHEEVLAHMHRFLQREDVLSAL 466
BLAST of mRNA_H-elongata_contig58225.13303.1 vs. uniprot
Match: A0A6S9CL72_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9CL72_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 2.060e-13 Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = 1
Query: 10 QSHECVVAVTERLQKMGIAGHQTTAGAERQVDQAKFIMDSLKIKLEEMFGGADQEHPSLAMVGECMDMFRQAAELYSAAGDPRHEEVLAQLHEFLQQPVVIAVL 321
QS CV + L++ G+ G T A +R + A ++ ++ K + + PS+ V MD++RQAAE + AGDPRHEEV+ +H+FL +P+VI++L
Sbjct: 399 QSALCVQEIQTVLKRHGVKGKHTNAATQRAIQMALSLVSEIQTKEKALANS-----PSVEKVDNIMDLYRQAAEKFEVAGDPRHEEVMTHMHKFLAKPLVISIL 497
BLAST of mRNA_H-elongata_contig58225.13303.1 vs. uniprot
Match: A0A7S2DZK0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2DZK0_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 2.070e-13 Identity = 37/104 (35.58%), Postives = 63/104 (60.58%), Query Frame = 1
Query: 10 QSHECVVAVTERLQKMGIAGHQTTAGAERQVDQAKFIMDSLKIKLEEMFGGADQEHPSLAMVGECMDMFRQAAELYSAAGDPRHEEVLAQLHEFLQQPVVIAVL 321
QS V + L++ G+ G T A +R + A ++ ++ K + + G P++ V E MD++RQAAE + AGDPRHEEV++ +H+FL +P+V+++L
Sbjct: 425 QSASAVQEIQAVLKRHGVKGKHTNAATQRAIQMALALVAEIQTKEKSLVNG-----PTVEKVDEIMDLYRQAAEKFEVAGDPRHEEVMSHMHKFLAKPLVMSIL 523
BLAST of mRNA_H-elongata_contig58225.13303.1 vs. uniprot
Match: A0A7R9WHH8_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WHH8_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 2.850e-12 Identity = 35/104 (33.65%), Postives = 62/104 (59.62%), Query Frame = 1
Query: 10 QSHECVVAVTERLQKMGIAGHQTTAGAERQVDQAKFIMDSLKIKLEEMFGGADQEHPSLAMVGECMDMFRQAAELYSAAGDPRHEEVLAQLHEFLQQPVVIAVL 321
+S +CV + L++ G+ G T A +R + A I+ ++ + + + +P++A V E MD++RQAAE + AGDPRHEEV+ + +FL +P+ ++L
Sbjct: 151 ESADCVQQIQTVLKRHGVRGKHTNAATQRSIQAALSIVAEIQRRERAL-----ESNPTVAAVNEIMDLYRQAAEKFEQAGDPRHEEVMGHMRKFLAKPLTASIL 249
BLAST of mRNA_H-elongata_contig58225.13303.1 vs. uniprot
Match: A0A6U6D8Y3_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6D8Y3_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 1.190e-11 Identity = 35/103 (33.98%), Postives = 60/103 (58.25%), Query Frame = 1
Query: 13 SHECVVAVTERLQKMGIAGHQTTAGAERQVDQAKFIMDSLKIKLEEMFGGADQEHPSLAMVGECMDMFRQAAELYSAAGDPRHEEVLAQLHEFLQQPVVIAVL 321
S ECV + L++ G+ G T A +R + A I+ ++ + ++ + P++ V E MD++RQAAE + AGDPRHEEV+ + +FL +P+ ++L
Sbjct: 488 SAECVQQIQTVLKRHGVRGKHTNAATQRSIQAALSIVAEIQRRERQL-----ESTPTVESVNEIMDLYRQAAEKFEQAGDPRHEEVMGHMRKFLAKPLTASIL 585
BLAST of mRNA_H-elongata_contig58225.13303.1 vs. uniprot
Match: A0A7S2LQS3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LQS3_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 4.970e-10 Identity = 33/92 (35.87%), Postives = 55/92 (59.78%), Query Frame = 1
Query: 46 LQKMGIAGHQTTAGAERQVDQAKFIMDSLKIKLEEMFGGADQEHPSLAMVGECMDMFRQAAELYSAAGDPRHEEVLAQLHEFLQQPVVIAVL 321
L++ G+ G T A +R + A ++ ++ K +E+ + P++ V E MD++RQAAE + +AGDPRHEEV+A + FL Q ++L
Sbjct: 468 LKQKGVKGKHTNAATQRAIQMALNLVALIQEKEKELL-----DQPTVDRVNEIMDLYRQAAEKFESAGDPRHEEVMAHMKRFLNQKFTTSIL 554
BLAST of mRNA_H-elongata_contig58225.13303.1 vs. uniprot
Match: K0R738_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R738_THAOC) HSP 1 Score: 63.9 bits (154), Expect = 1.260e-9 Identity = 32/92 (34.78%), Postives = 54/92 (58.70%), Query Frame = 1
Query: 46 LQKMGIAGHQTTAGAERQVDQAKFIMDSLKIKLEEMFGGADQEHPSLAMVGECMDMFRQAAELYSAAGDPRHEEVLAQLHEFLQQPVVIAVL 321
L++ G+ G T A ++ V A ++ ++ K +E+ +HP+ V E MD++RQAAE + +AGDPRH EV++ + FL Q ++L
Sbjct: 425 LKRHGVKGKHTNAATQKAVQMALNLVALIQHKEKELI-----DHPTTDRVNEIMDLYRQAAEKFESAGDPRHSEVMSHMQRFLSQQFTTSIL 511
BLAST of mRNA_H-elongata_contig58225.13303.1 vs. uniprot
Match: A0A1Z5JD16_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JD16_FISSO) HSP 1 Score: 62.4 bits (150), Expect = 4.310e-9 Identity = 36/103 (34.95%), Postives = 61/103 (59.22%), Query Frame = 1
Query: 13 SHECVVAVTERLQKMGIAGHQTTAGAERQVDQAKFIMDSLKIKLEEMFGGADQEHPSLAMVGECMDMFRQAAELYSAAGDPRHEEVLAQLHEFLQQPVVIAVL 321
S + V + L+ G+ G T A A R +++A ++ ++ K E+ A + P++ V E MD++RQAAE + AAGD RHEEV+ + +FL P+ +++L
Sbjct: 353 SADAVHQIQSVLKDHGVRGKHTNAAAYRAINEAMQLVQEIQTK--EL---ALKHDPTVNRVNEIMDLYRQAAERFEAAGDLRHEEVVIHMRKFLALPLTVSIL 450
BLAST of mRNA_H-elongata_contig58225.13303.1 vs. uniprot
Match: B8BS43_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BS43_THAPS) HSP 1 Score: 61.6 bits (148), Expect = 8.210e-9 Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = 1
Query: 46 LQKMGIAGHQTTAGAERQVDQAKFIMDSLKIKLEEMFGGADQEHPSLAMVGECMDMFRQAAELYSAAGDPRHEEVLAQLHEFLQQPVVIAVL 321
L+ G+ G T A +R V A ++ ++ K E+ ++P++ V E MD++RQAAE + AGDPRH EV+A + FL Q ++L
Sbjct: 492 LKSHGVKGKHTNAATQRAVQMALNMVQLIQQKEAELI-----DNPNVDRVNEIMDLYRQAAEKFEQAGDPRHTEVMAHMKRFLNQAFTTSIL 578 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58225.13303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig58225.13303.1 >prot_H-elongata_contig58225.13303.1 ID=prot_H-elongata_contig58225.13303.1|Name=mRNA_H-elongata_contig58225.13303.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp MAQSHECVVAVTERLQKMGIAGHQTTAGAERQVDQAKFIMDSLKIKLEEMback to top mRNA from alignment at H-elongata_contig58225:1847..3315- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig58225.13303.1 ID=mRNA_H-elongata_contig58225.13303.1|Name=mRNA_H-elongata_contig58225.13303.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1469bp|location=Sequence derived from alignment at H-elongata_contig58225:1847..3315- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig58225:1847..3315- >mRNA_H-elongata_contig58225.13303.1 ID=mRNA_H-elongata_contig58225.13303.1|Name=mRNA_H-elongata_contig58225.13303.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig58225:1847..3315- (Himanthalia elongata Himel1 dioecious)back to top |