mRNA_H-elongata_contig58165.13294.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58165.13294.1
Unique NamemRNA_H-elongata_contig58165.13294.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58165.13294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58165contigH-elongata_contig58165:1639..2319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size300
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58165.13294.1prot_H-elongata_contig58165.13294.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58165 1666..2319 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930943.5969472-UTR-H-elongata_contig58165:1638..16651622930943.5969472-UTR-H-elongata_contig58165:1638..1665Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58165 1639..1665 +
1691679634.8028054-UTR-H-elongata_contig58165:1638..16651691679634.8028054-UTR-H-elongata_contig58165:1638..1665Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig58165 1639..1665 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930943.6227152-CDS-H-elongata_contig58165:1665..17091622930943.6227152-CDS-H-elongata_contig58165:1665..1709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58165 1666..1709 +
1691679634.8122506-CDS-H-elongata_contig58165:1665..17091691679634.8122506-CDS-H-elongata_contig58165:1665..1709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58165 1666..1709 +
1622930943.6374393-CDS-H-elongata_contig58165:2090..23191622930943.6374393-CDS-H-elongata_contig58165:2090..2319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58165 2091..2319 +
1691679634.820969-CDS-H-elongata_contig58165:2090..23191691679634.820969-CDS-H-elongata_contig58165:2090..2319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58165 2091..2319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58165.13294.1

>prot_H-elongata_contig58165.13294.1 ID=prot_H-elongata_contig58165.13294.1|Name=mRNA_H-elongata_contig58165.13294.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MFCGPTGCALGDLVRHQIDGDPRRSRYDSRFHFHTGCSTMRRVASSLPDG
ISAHAASELASTVNVKGAPLMRTDSHYGRTDDGDDPTRRNS
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mRNA from alignment at H-elongata_contig58165:1639..2319+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58165.13294.1 ID=mRNA_H-elongata_contig58165.13294.1|Name=mRNA_H-elongata_contig58165.13294.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=681bp|location=Sequence derived from alignment at H-elongata_contig58165:1639..2319+ (Himanthalia elongata Himel1 dioecious)
GCGGTCTTGATCAAGAGCGGCAAAACGATGTTCTGCGGCCCGACAGGCTG
CGCCCTTGGGGATCTCGTTCGGTGAGCGAAGGTTTGCTACACACTAATAC
TCAACATAGAGACTGGACGCCGAGGATCTCGCACGAAATCGCGTCAGCGA
GCGGGGAGGCGGCCGGCCGTACGCGGAAGGGGCAAATAAAAGAGAAACAT
AATACATCATCCATATATTTCAACGAGATTCTCGTTGCCTTGAGGATCCT
CATGTGTCGCAAACACGGGGTGAGGAGGGGACGAGGGTCATTTGATACAG
ATTTTGCATTAAACGTGTATGGTCGGTGCTGCTGCTCTTGACTGCAACAC
AGAAAAATGATATACCCGAAGCACGAGGCGCCATCACAGAGAGACGCCGT
ACGTTTAGCAATATTCCGCCTTCGTTTGGCATATGTCCACCCTTCCGGTC
AGGCACCAGATAGACGGGGATCCCAGACGCAGCCGATACGACAGCCGCTT
CCACTTTCACACTGGCTGCTCCACCATGCGCAGGGTAGCTAGCTCGCTCC
CCGATGGAATCTCGGCGCACGCCGCGTCCGAGCTTGCGTCGACCGTGAAT
GTGAAGGGTGCTCCCCTCATGCGCACGGACTCCCACTACGGTCGAACCGA
CGATGGCGATGACCCCACGCGCAGAAACAGC
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Coding sequence (CDS) from alignment at H-elongata_contig58165:1639..2319+

>mRNA_H-elongata_contig58165.13294.1 ID=mRNA_H-elongata_contig58165.13294.1|Name=mRNA_H-elongata_contig58165.13294.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig58165:1639..2319+ (Himanthalia elongata Himel1 dioecious)
ATGTTCTGCGGCCCGACAGGCTGCGCCCTTGGGGATCTCGTTCGATGTTC
TGCGGCCCGACAGGCTGCGCCCTTGGGGATCTCGTTCGGCACCAGATAGA
CGGGGATCCCAGACGCAGCCGATACGACAGCCGCTTCCACTTTCACACTG
GCTGCTCCACCATGCGCAGGGTAGCTAGCTCGCTCCCCGATGGAATCTCG
GCGCACGCCGCGTCCGAGCTTGCGTCGACCGTGAATGTGAAGGGTGCTCC
CCTCATGCGCACGGACTCCCACTACGGTCGAACCGACGATGGCGATGACC
CCACGCGCAGAAACAGCGCACCAGATAGACGGGGATCCCAGACGCAGCCG
ATACGACAGCCGCTTCCACTTTCACACTGGCTGCTCCACCATGCGCAGGG
TAGCTAGCTCGCTCCCCGATGGAATCTCGGCGCACGCCGCGTCCGAGCTT
GCGTCGACCGTGAATGTGAAGGGTGCTCCCCTCATGCGCACGGACTCCCA
CTACGGTCGAACCGACGATGGCGATGACCCCACGCGCAGAAACAGC
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