mRNA_H-elongata_contig58121.13289.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig58121.13289.1
Unique NamemRNA_H-elongata_contig58121.13289.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig58121.13289.1 vs. uniprot
Match: D7FUT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUT6_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 6.400e-22
Identity = 43/66 (65.15%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    1 FNPFKRQDEKELLKSRTHNRRRWTHVFAPGEKEFQTIDTMPGPIWVSLSQPALLPLSIDFLPARNV 198
            FNPF+  DE++LL+ RTHNRRRW+HVF+ GE EFQT DTMPGPI+ SL QP LLP SID++P + +
Sbjct: 1428 FNPFQTADERQLLRIRTHNRRRWSHVFSRGETEFQTTDTMPGPIYRSLCQPVLLPTSIDYVPTQKI 1493
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BLAST of mRNA_H-elongata_contig58121.13289.1 vs. uniprot
Match: A0A6H5L3G7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3G7_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.140e-21
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 FNPFKRQDEKELLKSRTHNRRRWTHVFAPGEKEFQTIDTMPGPIWVSLSQPALLPLSIDFLPARNV 198
            FNPF+  DE++LL+  THNRRRW+HVF+ GE EFQT DTMPGPI+ SL QP LLP SID++P + +
Sbjct: 1498 FNPFQTADERQLLRISTHNRRRWSHVFSRGETEFQTTDTMPGPIYRSLCQPVLLPTSIDYVPTQKI 1563
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BLAST of mRNA_H-elongata_contig58121.13289.1 vs. uniprot
Match: A0A4D9CWC9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWC9_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 9.870e-18
Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:    1 FNPFKRQDEKELLKSRTHNRRRWTHVFAPGEKEFQTIDTMPGPIWVSLSQPALLPLSIDFLPARNVCIYIYIYKLIILVFPPSD 252
             NPF+R+DE ELL+ RTHN RRW+HVF PGE EF+     PGP W SL QPA+LPL+ D+LP        Y      L+ P  D
Sbjct: 1004 INPFRREDEAELLQKRTHNHRRWSHVFPPGEVEFKH---SPGPNWKSLCQPAILPLTTDYLPTPEQLRKDYTESFYTLMLPEGD 1084
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BLAST of mRNA_H-elongata_contig58121.13289.1 vs. uniprot
Match: K8YTK9_NANGC (Dep domain containing 5 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YTK9_NANGC)

HSP 1 Score: 86.3 bits (212), Expect = 9.880e-18
Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:    1 FNPFKRQDEKELLKSRTHNRRRWTHVFAPGEKEFQTIDTMPGPIWVSLSQPALLPLSIDFLPARNVCIYIYIYKLIILVFPPSD 252
             NPF+R+DE ELL+ RTHN RRW+HVF PGE EF+     PGP W SL QPA+LPL+ D+LP        Y      L+ P  D
Sbjct: 1052 INPFRREDEAELLQKRTHNHRRWSHVFPPGEVEFKH---SPGPNWKSLCQPAILPLTTDYLPTPEQLRKDYTESFYTLMLPEGD 1132
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BLAST of mRNA_H-elongata_contig58121.13289.1 vs. uniprot
Match: W7T8Z9_9STRA (Dep domain containing protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T8Z9_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 9.900e-18
Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:    1 FNPFKRQDEKELLKSRTHNRRRWTHVFAPGEKEFQTIDTMPGPIWVSLSQPALLPLSIDFLPARNVCIYIYIYKLIILVFPPSD 252
             NPF+R+DE ELL+ RTHN RRW+HVF PGE EF+     PGP W SL QPA+LPL+ D+LP        Y      L+ P  D
Sbjct: 1238 INPFRREDEAELLQKRTHNHRRWSHVFPPGEVEFKH---SPGPNWKSLCQPAILPLTTDYLPTPEQLRKDYTESFYTLMLPEGD 1318
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BLAST of mRNA_H-elongata_contig58121.13289.1 vs. uniprot
Match: A0A7S2RWH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RWH1_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.390e-15
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:    1 FNPFKRQDEKELLKSRTHNRRRWTHVFAPGEKEFQTIDTMPGPIWVSLSQPALLPLSIDFLPA 189
             NPF+++DE+E+L  RTHNRRRW+HVF  GE EF+      GP W SL QPA+LP++ID  P+
Sbjct:   70 LNPFRQEDEEEVLAKRTHNRRRWSHVFPQGEIEFKR---HAGPNWKSLCQPAILPVTIDIYPS 129
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BLAST of mRNA_H-elongata_contig58121.13289.1 vs. uniprot
Match: A0A6V2K027_9STRA (Hypothetical protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2K027_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.530e-15
Identity = 39/74 (52.70%), Postives = 50/74 (67.57%), Query Frame = 1 
Query:    1 FNPFKRQDEKELLKSRTHNRRRWTHVFAPGEKEFQTIDTMPGPIWVSLSQPALLPLSIDFLPARNVCIYIYIYK 222
             NPF++ DE+E+L  RTHNRRRW+HVF  GE EF+      GP W SL QPA+LP++IDF P+     Y Y +K
Sbjct:   90 LNPFRQADEEEVLAKRTHNRRRWSHVFPTGEVEFKR---HAGPNWKSLCQPAVLPITIDFHPSPQEINYKYKFK 160
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BLAST of mRNA_H-elongata_contig58121.13289.1 vs. uniprot
Match: K0TPQ1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TPQ1_THAOC)

HSP 1 Score: 78.2 bits (191), Expect = 6.870e-15
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 FNPFKRQDEKELLKSRTHNRRRWTHVFAPGEKEFQTIDTMPGPIWVSLSQPALLPLSIDFLPARN 195
             NPF++QDE E+L  RTHNRRRW+HVF  GE EF+      GP W SL QPA+LP++IDF P+  
Sbjct: 1558 LNPFRQQDENEVLAKRTHNRRRWSHVFPLGEDEFKR---HAGPNWKSLCQPAVLPMTIDFHPSEQ 1619
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BLAST of mRNA_H-elongata_contig58121.13289.1 vs. uniprot
Match: A0A448YUC6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YUC6_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 8.930e-15
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    1 FNPFKRQDEKELLKSRTHNRRRWTHVFAPGEKEFQTIDTMPGPIWVSLSQPALLPLSIDFLP 186
            FNPF++ DE E+L  R+HNRRRW+HV+  GE EF+      GPIW SL+ PA+LPLS+D+ P
Sbjct:   24 FNPFRQSDEDEVLAKRSHNRRRWSHVYPEGEVEFKR---HAGPIWNSLTSPAILPLSVDYFP 82
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BLAST of mRNA_H-elongata_contig58121.13289.1 vs. uniprot
Match: A0A7S3Y3Y5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3Y5_HETAK)

HSP 1 Score: 76.6 bits (187), Expect = 2.250e-14
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:    1 FNPFKRQDEKELLKSRTHNRRRWTHVFAPGEKEFQTIDTMPGPIWVSLSQPALLPLSIDFLPARNVCIYIYIYKLIILVFPPSDFHA 261
            F+PF R DE++LL  RTHNRRRW+HVF  GE EF+ I   PGP + SL  PA LPL++D+ P+       Y   +  L   P +  A
Sbjct:  121 FSPFSRADEEDLLAQRTHNRRRWSHVFPLGEVEFKRI---PGPNYKSLCMPACLPLTVDYYPSEMDLANNYTEAVYFLTLEPPEARA 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig58121.13289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FUT6_ECTSI6.400e-2265.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3G7_9PHAE4.140e-2163.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9CWC9_9STRA9.870e-1851.19Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
K8YTK9_NANGC9.880e-1851.19Dep domain containing 5 n=1 Tax=Nannochloropsis ga... [more]
W7T8Z9_9STRA9.900e-1851.19Dep domain containing protein n=2 Tax=Nannochlorop... [more]
A0A7S2RWH1_9STRA2.390e-1555.56Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A6V2K027_9STRA3.530e-1552.70Hypothetical protein n=6 Tax=Ditylum brightwellii ... [more]
K0TPQ1_THAOC6.870e-1556.92Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A448YUC6_9STRA8.930e-1556.45Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S3Y3Y5_HETAK2.250e-1445.98Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig58121contigH-elongata_contig58121:3051..3711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue2.7e-18
Seed eggNOG ortholog2880.D7FUT6
Preferred nameIML1
KEGG koko:K20404
KEGG Pathwayko04150,map04150
GOsGO:0000306,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005096,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0006950,GO:0006995,GO:0007154,GO:0008047,GO:0008150,GO:0009267,GO:0009605,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010506,GO:0010508,GO:0010646,GO:0010648,GO:0016020,GO:0016241,GO:0019222,GO:0019898,GO:0023051,GO:0023057,GO:0030234,GO:0030695,GO:0031090,GO:0031312,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031667,GO:0031668,GO:0031669,GO:0032006,GO:0032007,GO:0032991,GO:0033043,GO:0033554,GO:0034198,GO:0035859,GO:0042594,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0043562,GO:0044087,GO:0044088,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051056,GO:0051058,GO:0051128,GO:0051336,GO:0051345,GO:0051716,GO:0060589,GO:0065007,GO:0065009,GO:0071496,GO:0097042,GO:0098588,GO:0098772,GO:0098805,GO:0098852,GO:1902115,GO:1902531,GO:1902532,GO:1903432,GO:1904262,GO:1990130,GO:1990928,GO:2000785
EggNOG free text desc.negative regulation of TOR signaling
EggNOG OGsKOG3572@1,KOG3572@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size270
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930942.8915946-CDS-H-elongata_contig58121:3050..30831622930942.8915946-CDS-H-elongata_contig58121:3050..3083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58121 3051..3083 +
1691679634.4591799-CDS-H-elongata_contig58121:3050..30831691679634.4591799-CDS-H-elongata_contig58121:3050..3083Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58121 3051..3083 +
1622930942.9150362-CDS-H-elongata_contig58121:3474..37111622930942.9150362-CDS-H-elongata_contig58121:3474..3711Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58121 3475..3711 +
1691679634.4720428-CDS-H-elongata_contig58121:3474..37111691679634.4720428-CDS-H-elongata_contig58121:3474..3711Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig58121 3475..3711 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig58121.13289.1prot_H-elongata_contig58121.13289.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig58121 3051..3711 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig58121.13289.1

>prot_H-elongata_contig58121.13289.1 ID=prot_H-elongata_contig58121.13289.1|Name=mRNA_H-elongata_contig58121.13289.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
FNPFKRQDEKELLKSRTHNRRRWTHVFAPGEKEFQTIDTMPGPIWVSLSQ
PALLPLSIDFLPARNVCIYIYIYKLIILVFPPSDFHAPR*
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mRNA from alignment at H-elongata_contig58121:3051..3711+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig58121.13289.1 ID=mRNA_H-elongata_contig58121.13289.1|Name=mRNA_H-elongata_contig58121.13289.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=661bp|location=Sequence derived from alignment at H-elongata_contig58121:3051..3711+ (Himanthalia elongata Himel1 dioecious)
TTCAATCCTTTCAAAAGACAGGACGAGAAAGAGGTGCGAGCGTCAATGTC
ATGCGCATGCACGCCCATGCGTGTCTCAGGGTAATATCGCAGTAGGATGA
GTATGGGATGGTTATTTTGGGTGTTTTTGGTGCGTTAAGTTAGTTTAGAG
AATATAAAACATAGGATGGGGAAGGGCGCCGAGATGCTCTCTCTCTCTCG
CGGGGATACGCGCTTGTTGGCCTGTCGACGCTCGTTATTTTTTTGCCATT
ATCGTTGTCGCTGTCGCCGTCTCGTTCACGTCTTTTCCAGCCACCTGATT
TAGTGTCTCTCTTCGAGAAATATCGTACCGGTATGTGATTGTTATCACCA
CTCCTCTGAAGTTTTCTCCCGTCTTGCCTTTTATCCGTTGATGGATCACT
CCCCGCGTTCTCGCGTTCTCGCAGCTTCTCAAGAGCCGCACACACAATCG
CCGGCGGTGGACGCACGTGTTCGCTCCCGGAGAGAAAGAGTTCCAGACCA
TCGACACCATGCCGGGGCCTATCTGGGTGTCTTTGTCGCAGCCAGCGCTC
CTGCCGCTGTCTATCGATTTCCTGCCTGCTAGAAATGTGTGTATATATAT
ATATATATATAAATTAATTATATTGGTGTTCCCTCCATCGGATTTCCACG
CCCCGCGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig58121:3051..3711+

>mRNA_H-elongata_contig58121.13289.1 ID=mRNA_H-elongata_contig58121.13289.1|Name=mRNA_H-elongata_contig58121.13289.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig58121:3051..3711+ (Himanthalia elongata Himel1 dioecious)
TTCAATCCTTTCAAAAGACAGGACGAGAAAGAGTTCAATCCTTTCAAAAG
ACAGGACGAGAAAGAGCTTCTCAAGAGCCGCACACACAATCGCCGGCGGT
GGACGCACGTGTTCGCTCCCGGAGAGAAAGAGTTCCAGACCATCGACACC
ATGCCGGGGCCTATCTGGGTGTCTTTGTCGCAGCCAGCGCTCCTGCCGCT
GTCTATCGATTTCCTGCCTGCTAGAAATGTGTGTATATATATATATATAT
ATAAATTAATTATATTGGTGTTCCCTCCATCGGATTTCCACGCCCCGCGC
TGACTTCTCAAGAGCCGCACACACAATCGCCGGCGGTGGACGCACGTGTT
CGCTCCCGGAGAGAAAGAGTTCCAGACCATCGACACCATGCCGGGGCCTA
TCTGGGTGTCTTTGTCGCAGCCAGCGCTCCTGCCGCTGTCTATCGATTTC
CTGCCTGCTAGAAATGTGTGTATATATATATATATATATAAATTAATTAT
ATTGGTGTTCCCTCCATCGGATTTCCACGCCCCGCGCTGA
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