mRNA_H-elongata_contig5801.13274.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5801.13274.1
Unique NamemRNA_H-elongata_contig5801.13274.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig5801.13274.1 vs. uniprot
Match: UPI0020246435 (hypothetical protein n=2 Tax=Proteus mirabilis TaxID=584 RepID=UPI0020246435)

HSP 1 Score: 230 bits (586), Expect = 2.570e-67
Identity = 138/358 (38.55%), Postives = 204/358 (56.98%), Query Frame = 1
Query:   19 LDIQEPRNRRQAMESPEWNDWKKAEKIEMRGMVDNCVSKQVAWPKDKVVVGMKMLYKREVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASIRMLLATAAAKDRELRHFDAKQAFLTADIDEELYIEIPEEYRKFPGA--VGRLNKAIYGLVQAGRCWKKRFCSDMAAIGFKQGKADPCVFRKVVDGEAEVVVVVHVDDILAHTKDTATMDRFAAELRQKFKLKDMGDARYYMGCHITRNRKVRELKIEQHLYVESMVEKFDV---KKGIKIPATSGVPTLSKADEPRNPEEKEKVRKFPYREAVGALIWTAKITRPDIASAVRAMARFCENPAPAHKKAVMKIMQYLLHT 1077
            LD  EP N  +AM SP+   W +A K EM  M +N V   V  P D+  +  K ++K++   DG V  YK RLVA+GF Q++G+ Y E +SP     S+R++LA AA  D E+   D K AFL   ++EELY+  PE +    GA  V +L ++IYGLVQA R W KRF S + A GF Q   + C+++KV  G +   ++++VDDIL    D   +D     L + F +KD+G+A Y +G  I R+R  R + + Q  Y++ +++KF +   KKG  +P   GV  LSK   P   E++EK++  PY  A+G++++    TRPD+  A+    R+  NP   H  AV  I++YL  T
Sbjct:    3 LDHDEPTNYEEAMVSPDSAKWLEAMKSEMGSMYENKVWTLVDLPDDRQAIENKWIFKKKTDADGNVTVYKARLVAKGFRQVQGIDYDETFSPVAMLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGFLEEELYMMQPEGFVDPKGANKVCKLQRSIYGLVQASRSWNKRFDSVIKAYGFIQTFGEACIYKKV-SGSSVAFLILYVDDILLIGNDIEFLDSIKGYLNKSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYLDKVLKKFKMDQAKKGF-LPVLQGV-KLSKTQCPTTAEDREKMKDVPYASAIGSIMYAMLCTRPDVCLAISLAGRYQSNPGVDHWTAVKNILKYLKRT 357          
BLAST of mRNA_H-elongata_contig5801.13274.1 vs. uniprot
Match: UPI002025A47D (hypothetical protein n=1 Tax=Proteus mirabilis TaxID=584 RepID=UPI002025A47D)

HSP 1 Score: 222 bits (566), Expect = 2.720e-64
Identity = 135/358 (37.71%), Postives = 200/358 (55.87%), Query Frame = 1
Query:   19 LDIQEPRNRRQAMESPEWNDWKKAEKIEMRGMVDNCVSKQVAWPKDKVVVGMKMLYKREVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASIRMLLATAAAKDRELRHFDAKQAFLTADIDEELYIEIPEEY--RKFPGAVGRLNKAIYGLVQAGRCWKKRFCSDMAAIGFKQGKADPCVFRKVVDGEAEVVVVVHVDDILAHTKDTATMDRFAAELRQKFKLKDMGDARYYMGCHITRNRKVRELKIEQHLYVESMVEKFDV---KKGIKIPATSGVPTLSKADEPRNPEEKEKVRKFPYREAVGALIWTAKITRPDIASAVRAMARFCENPAPAHKKAVMKIMQYLLHT 1077
            LD  EP N  +AM  P+ N W +A K E+  M +N V      P D+  +  K ++K++   DG V  YK RLVA+G+ Q++GV Y E +SP     S+R++LA AA  D E+   D K AFL   + EELY+  PE +   K    V +L ++IYGLVQA R W  RF   + A GF Q   + CV++KV  G +   ++++VDDIL    D   +D   A L + F +KD+G+A Y +G  I R+R  R + + Q  Y++ +++KF +   KKG  +P   GV  LS A  P   ++KE++   PY  A+G++++    TRPD+  AV  + R+  NP   H  AV  I++YL  T
Sbjct:   11 LDNGEPSNYEEAMAGPDSNKWLEAMKSEIESMYENKVWTLTDLPDDRRAIENKWIFKKKTDADGNVTIYKARLVAKGYRQVQGVDYDETFSPVAKLKSVRIMLAIAAYYDYEIWQMDVKTAFLNGHLKEELYMMQPEGFVDPKNANKVCKLQRSIYGLVQASRSWNIRFDEMIKAFGFMQTYGEACVYKKV-SGSSVAFLILYVDDILLMGNDIELLDSIKAYLNKCFSMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYLDKILKKFKMDQSKKGF-LPVLQGV-RLSSAQCPTTAKDKEEMSVIPYASAIGSIMYAMLCTRPDVNLAVSLVGRYQSNPGKEHWTAVKNILKYLKRT 365          
BLAST of mRNA_H-elongata_contig5801.13274.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 6.960e-62
Identity = 122/310 (39.35%), Postives = 185/310 (59.68%), Query Frame = 1
Query:  148 PKDKVVVGMKMLYKREVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASIRMLLATAAAKDRELRHFDAKQAFLTADIDEELYIEIPEEYRKFPGAVGRLNKAIYGLVQAGRCWKKRFCSDMAAIGFKQGKADPCVFRKVVDGEAEVVVVVHVDDILAHTKDTATMDRFAAELRQKFKLKDMGDARYYMGCHITRNRKVRELKIEQHLYVESMVEKFDVKKGIKIPATSGVPTLSKADEPRNPEEKEKVRKFPYREAVGALIWTAKITRPDIASAVRAMARFCENPAPAHKKAVMKIMQYLLHT 1077
            P+ +  V  K  +  +  ++GK++ +K RLVA+GF QI  V Y    SP PS+ASI+++LA A  K   L H+D KQA+  A +DEE+++++P         + +  +AIYGL Q+GR W       +   GF+Q KADPCVFRK+VD    +++V++VDDIL    D    +   A L +KF  K++G+ +++ GC I R+ +   L+I Q  Y++SMVE+FDVK   +IPAT G     K        E E+  ++P REA+G+++W +  +RPD++ AVRA+AR    PA  H  A+ KI+ YL  T
Sbjct:  776 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGT 1077          
BLAST of mRNA_H-elongata_contig5801.13274.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 8.080e-62
Identity = 122/310 (39.35%), Postives = 185/310 (59.68%), Query Frame = 1
Query:  148 PKDKVVVGMKMLYKREVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASIRMLLATAAAKDRELRHFDAKQAFLTADIDEELYIEIPEEYRKFPGAVGRLNKAIYGLVQAGRCWKKRFCSDMAAIGFKQGKADPCVFRKVVDGEAEVVVVVHVDDILAHTKDTATMDRFAAELRQKFKLKDMGDARYYMGCHITRNRKVRELKIEQHLYVESMVEKFDVKKGIKIPATSGVPTLSKADEPRNPEEKEKVRKFPYREAVGALIWTAKITRPDIASAVRAMARFCENPAPAHKKAVMKIMQYLLHT 1077
            P+ +  V  K  +  +  ++GK++ +K RLVA+GF QI  V Y    SP PS+ASI+++LA A  K   L H+D KQA+  A +DEE+++++P         + +  +AIYGL Q+GR W       +   GF+Q KADPCVFRK+VD    +++V++VDDIL    D    +   A L +KF  K++G+ +++ GC I R+ +   L+I Q  Y++SMVE+FDVK   +IPAT G     K        E E+  ++P REA+G+++W +  +RPD++ AVRA+AR    PA  H  A+ KI+ YL  T
Sbjct: 1155 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGT 1456          
BLAST of mRNA_H-elongata_contig5801.13274.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 8.150e-62
Identity = 122/310 (39.35%), Postives = 185/310 (59.68%), Query Frame = 1
Query:  148 PKDKVVVGMKMLYKREVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASIRMLLATAAAKDRELRHFDAKQAFLTADIDEELYIEIPEEYRKFPGAVGRLNKAIYGLVQAGRCWKKRFCSDMAAIGFKQGKADPCVFRKVVDGEAEVVVVVHVDDILAHTKDTATMDRFAAELRQKFKLKDMGDARYYMGCHITRNRKVRELKIEQHLYVESMVEKFDVKKGIKIPATSGVPTLSKADEPRNPEEKEKVRKFPYREAVGALIWTAKITRPDIASAVRAMARFCENPAPAHKKAVMKIMQYLLHT 1077
            P+ +  V  K  +  +  ++GK++ +K RLVA+GF QI  V Y    SP PS+ASI+++LA A  K   L H+D KQA+  A +DEE+++++P         + +  +AIYGL Q+GR W       +   GF+Q KADPCVFRK+VD    +++V++VDDIL    D    +   A L +KF  K++G+ +++ GC I R+ +   L+I Q  Y++SMVE+FDVK   +IPAT G     K        E E+  ++P REA+G+++W +  +RPD++ AVRA+AR    PA  H  A+ KI+ YL  T
Sbjct: 1175 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGT 1476          
BLAST of mRNA_H-elongata_contig5801.13274.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 8.240e-62
Identity = 122/310 (39.35%), Postives = 185/310 (59.68%), Query Frame = 1
Query:  148 PKDKVVVGMKMLYKREVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASIRMLLATAAAKDRELRHFDAKQAFLTADIDEELYIEIPEEYRKFPGAVGRLNKAIYGLVQAGRCWKKRFCSDMAAIGFKQGKADPCVFRKVVDGEAEVVVVVHVDDILAHTKDTATMDRFAAELRQKFKLKDMGDARYYMGCHITRNRKVRELKIEQHLYVESMVEKFDVKKGIKIPATSGVPTLSKADEPRNPEEKEKVRKFPYREAVGALIWTAKITRPDIASAVRAMARFCENPAPAHKKAVMKIMQYLLHT 1077
            P+ +  V  K  +  +  ++GK++ +K RLVA+GF QI  V Y    SP PS+ASI+++LA A  K   L H+D KQA+  A +DEE+++++P         + +  +AIYGL Q+GR W       +   GF+Q KADPCVFRK+VD    +++V++VDDIL    D    +   A L +KF  K++G+ +++ GC I R+ +   L+I Q  Y++SMVE+FDVK   +IPAT G     K        E E+  ++P REA+G+++W +  +RPD++ AVRA+AR    PA  H  A+ KI+ YL  T
Sbjct: 1318 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGT 1619          
BLAST of mRNA_H-elongata_contig5801.13274.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 220 bits (561), Expect = 1.040e-61
Identity = 120/310 (38.71%), Postives = 186/310 (60.00%), Query Frame = 1
Query:  148 PKDKVVVGMKMLYKREVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASIRMLLATAAAKDRELRHFDAKQAFLTADIDEELYIEIPEEYRKFPGAVGRLNKAIYGLVQAGRCWKKRFCSDMAAIGFKQGKADPCVFRKVVDGEAEVVVVVHVDDILAHTKDTATMDRFAAELRQKFKLKDMGDARYYMGCHITRNRKVRELKIEQHLYVESMVEKFDVKKGIKIPATSGVPTLSKADEPRNPEEKEKVRKFPYREAVGALIWTAKITRPDIASAVRAMARFCENPAPAHKKAVMKIMQYLLHT 1077
            P+ +  V  K  +  +  ++GK++ +K RLVA+GF QI  V Y    SP PS+ASI+++LA A  K   L H+D KQA+  A +DEE+++++P         + +  +AIYGL Q+GR W       +   GF+Q KADPCVFRK+VD    +++V++VDDIL    D    +   A L +KF  K++ + +++ GC I R+ +   L+I Q  Y++SMV++FDV+   +IPA+ GV    K D+       EK  ++P REA+G+++W +  +RPD++ AVRA+AR    PA  H  A+ KI+ YL  T
Sbjct:  330 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDD-------EKGGEWPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGT 631          
BLAST of mRNA_H-elongata_contig5801.13274.1 vs. uniprot
Match: UPI00136FC456 (Ty1/Copia family RNAse HI domain-containing protein n=2 Tax=Ligilactobacillus salivarius TaxID=1624 RepID=UPI00136FC456)

HSP 1 Score: 217 bits (552), Expect = 1.050e-61
Identity = 129/357 (36.13%), Postives = 198/357 (55.46%), Query Frame = 1
Query:   19 LDIQEPRNRRQAMESPEWNDWKKAEKIEMRGMVDNCVSKQVAWPKDKVVVGMKMLYKREVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASIRMLLATAAAKDRELRHFDAKQAFLTADIDEELYIEIPEEY--RKFPGAVGRLNKAIYGLVQAGRCWKKRFCSDMAAIGFKQGKADPCVFRKVVDGEAEVVVVVHVDDILAHTKDTATMDRFAAELRQKFKLKDMGDARYYMGCHITRNRKVRELKIEQHLYVESMVEKFDVKKGIK--IPATSGVPTLSKADEPRNPEEKEKVRKFPYREAVGALIWTAKITRPDIASAVRAMARFCENPAPAHKKAVMKIMQYLLHT 1077
            LD  EP N  +AM  P+ N W +A K E+  M +N V      P+ +  +  K ++K++   DG V  YK RLVA+GF Q+ GV Y E +SP     S+R++LA AA  D E+   D K AFL   + EELY+  PE +   K    V +L ++IYGLVQA R W KRF   + A GF Q   + C+++KV  G +   ++++VDDIL    +   ++     L + F +KD+G+A Y +G  I R+R  R + + Q  Y++ ++++F +++  K  +P   G   LSK   P   E++E +R  PY  A+G++++    TRPD++ A+    RF  NP   H  AV  I++YL  T
Sbjct:   71 LDNNEPANYEEAMVGPDSNKWLEAMKSEIGSMYENKVWTLEILPEGRKAIQNKWIFKKKTDADGNVTVYKARLVAKGFSQVPGVDYDETFSPVAMLKSVRIMLAIAAFFDYEIWQMDVKTAFLNGFLKEELYMMQPEGFVDPKNANKVCKLQRSIYGLVQASRSWNKRFDEVIKAFGFIQVVGESCIYKKV-SGSSVAFLILYVDDILLIGNNVELLESIKDYLNKSFSMKDLGEAAYILGIKIYRDRSKRLIGLSQSTYLDKVLKRFKMEQSKKGFLPVLQGT-RLSKTQCPATDEDREHMRSVPYASAIGSIMYAMLCTRPDVSLAISMAGRFQSNPGVDHWTAVKNILKYLKRT 425          
BLAST of mRNA_H-elongata_contig5801.13274.1 vs. uniprot
Match: A0A8I7BEN6_HORVV (Uncharacterized protein n=26 Tax=cellular organisms TaxID=131567 RepID=A0A8I7BEN6_HORVV)

HSP 1 Score: 223 bits (567), Expect = 2.570e-61
Identity = 136/358 (37.99%), Postives = 202/358 (56.42%), Query Frame = 1
Query:   19 LDIQEPRNRRQAMESPEWNDWKKAEKIEMRGMVDNCVSKQVAWPKDKVVVGMKMLYKREVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASIRMLLATAAAKDRELRHFDAKQAFLTADIDEELYIEIPEEYRKFPGA--VGRLNKAIYGLVQAGRCWKKRFCSDMAAIGFKQGKADPCVFRKVVDGEAEVVVVVHVDDILAHTKDTATMDRFAAELRQKFKLKDMGDARYYMGCHITRNRKVRELKIEQHLYVESMVEKFDV---KKGIKIPATSGVPTLSKADEPRNPEEKEKVRKFPYREAVGALIWTAKITRPDIASAVRAMARFCENPAPAHKKAVMKIMQYLLHT 1077
            LD  EP N  +AM  P+ N W +A K E+  M +N V   V  P ++  +  K ++K++   +G V  YK RLVA+GF QI+GV Y E +SP     S+R++LA AA  D E+   D K AFL  ++ EELY+  PE +    GA  V +L ++IYGLVQA R W  RF   + A GF Q   + C+++KV  G +   +V++VDDIL    D   ++   A L + F +KD+G+A Y +G  I R+R  R + + Q  Y++ +++KF++   KKG  +P   G+  LSK   P    ++EK+   PY  AVG+L++    TRPDI   +  + R+  NP   H  AV  I++YL  T
Sbjct:  800 LDNGEPSNYEEAMAGPDSNKWLEAMKSEIGSMYENKVWTLVDLPDERQAIENKWIFKKKTDANGNVTVYKARLVAKGFRQIQGVDYEETFSPVAKLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGNLKEELYMMQPEGFVDPKGANKVCKLQRSIYGLVQASRSWNIRFNEVIKAFGFIQVYGEACMYKKV-SGSSVAFLVLYVDDILLMGNDIEMLESIKAYLNKSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYLDKILKKFNMENSKKGF-LPVLQGM-RLSKTQSPTTAADREKMSSVPYASAVGSLMYAMLCTRPDINLVISLVGRYQSNPGAEHWTAVKNILKYLKRT 1154          
BLAST of mRNA_H-elongata_contig5801.13274.1 vs. uniprot
Match: A0A5N6LW24_9ASTR (Integrase catalytic domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LW24_9ASTR)

HSP 1 Score: 221 bits (563), Expect = 3.640e-61
Identity = 133/353 (37.68%), Postives = 195/353 (55.24%), Query Frame = 1
Query:   31 EPRNRRQAMESPEWNDWKKAEKIEMRGMVDNCVSKQVAWPKDKVVVGMKMLYKREVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASIRMLLATAAAKDRELRHFDAKQAFLTADIDEELYIEIPEEY--RKFPGAVGRLNKAIYGLVQAGRCWKKRFCSDMAAIGFKQGKADPCVFRKVVDGEAEVVVVVHVDDILAHTKDTATMDRFAAELRQKFKLKDMGDARYYMGCHITRNRKVRELKIEQHLYVESMVEKFDVKKGIK--IPATSGVPTLSKADEPRNPEEKEKVRKFPYREAVGALIWTAKITRPDIASAVRAMARFCENPAPAHKKAVMKIMQYLLHT 1077
            EP N + A+  PE   W  A   EM+ M DN V   V  P     VG K ++KR+    G V  YK RLVA+GF Q +GV Y E +SP     SIR+LLA AA  D E+   D K AFL   + E++Y+  PE +   K+P  V +LNK+IYGL QA RCW  RF   +   GF + + +PCV+RK   G     ++++VDDIL    +   ++     L   F +KD+G+A Y +G  I R+R  R L + Q  Y++ M+ +F+++   K  IP T G   L+K+  P    E  +++  PY  A+G++++    TRPD++ A+   +RF ++P  AH  AV  I++YL  T
Sbjct:  465 EPTNHKTAISDPESAKWLDAMNSEMQSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPEGFVDPKYPNKVCKLNKSIYGLKQASRCWNLRFDQKIKEFGFIKNEDEPCVYRKA-SGRTISFLILYVDDILIIGNNIPMLNEVKHWLGNCFAMKDLGEAAYILGIKIHRDRSKRLLGMSQSAYIDKMMTRFNMENSKKGTIPMTKGT-VLNKSQSPSTDIEIRRMQAIPYASAIGSIMYAMLCTRPDVSYALSMTSRFQQSPGIAHWTAVKNILKYLRRT 815          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5801.13274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00202464352.570e-6738.55hypothetical protein n=2 Tax=Proteus mirabilis Tax... [more]
UPI002025A47D2.720e-6437.71hypothetical protein n=1 Tax=Proteus mirabilis Tax... [more]
A0A6H5KSG8_9PHAE6.960e-6239.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE8.080e-6239.35Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE8.150e-6239.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE8.240e-6239.35Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JC10_9PHAE1.040e-6138.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00136FC4561.050e-6136.13Ty1/Copia family RNAse HI domain-containing protei... [more]
A0A8I7BEN6_HORVV2.570e-6137.99Uncharacterized protein n=26 Tax=cellular organism... [more]
A0A5N6LW24_9ASTR3.640e-6137.68Integrase catalytic domain-containing protein n=2 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5801contigH-elongata_contig5801:10246..11322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score221.9
Seed ortholog evalue4.9e-55
Seed eggNOG ortholog65672.G4TWW2
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1077
Cds size1077
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930940.8246372-CDS-H-elongata_contig5801:10245..113221622930940.8246372-CDS-H-elongata_contig5801:10245..11322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5801 10246..11322 +
1691679633.5222583-CDS-H-elongata_contig5801:10245..113221691679633.5222583-CDS-H-elongata_contig5801:10245..11322Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5801 10246..11322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5801.13274.1prot_H-elongata_contig5801.13274.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5801 10246..11322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5801.13274.1

>prot_H-elongata_contig5801.13274.1 ID=prot_H-elongata_contig5801.13274.1|Name=mRNA_H-elongata_contig5801.13274.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=359bp
MAIHATLDIQEPRNRRQAMESPEWNDWKKAEKIEMRGMVDNCVSKQVAWP
KDKVVVGMKMLYKREVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTP
STASIRMLLATAAAKDRELRHFDAKQAFLTADIDEELYIEIPEEYRKFPG
AVGRLNKAIYGLVQAGRCWKKRFCSDMAAIGFKQGKADPCVFRKVVDGEA
EVVVVVHVDDILAHTKDTATMDRFAAELRQKFKLKDMGDARYYMGCHITR
NRKVRELKIEQHLYVESMVEKFDVKKGIKIPATSGVPTLSKADEPRNPEE
KEKVRKFPYREAVGALIWTAKITRPDIASAVRAMARFCENPAPAHKKAVM
KIMQYLLHT
back to top

mRNA from alignment at H-elongata_contig5801:10246..11322+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5801.13274.1 ID=mRNA_H-elongata_contig5801.13274.1|Name=mRNA_H-elongata_contig5801.13274.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1077bp|location=Sequence derived from alignment at H-elongata_contig5801:10246..11322+ (Himanthalia elongata Himel1 dioecious)
ATGGCCATTCACGCGACGCTGGATATACAGGAACCGAGGAATCGGCGGCA GGCGATGGAATCGCCAGAATGGAACGATTGGAAGAAAGCAGAGAAAATAG AGATGCGTGGCATGGTCGATAACTGCGTTTCTAAGCAGGTGGCTTGGCCG AAGGATAAGGTTGTGGTTGGCATGAAAATGCTCTACAAACGAGAAGTCGG ACAGGACGGCAAGGTCGAGAAATATAAGTGCCGGCTTGTAGCTCAAGGGT TCTGGCAGATAGAGGGTGTGCACTATACGGAGAAATACTCACCCACGCCA TCGACCGCATCAATCCGGATGCTTTTGGCCACAGCAGCGGCCAAGGACCG TGAGCTGCGCCATTTCGACGCGAAGCAGGCATTCCTGACAGCGGACATCG ATGAAGAATTGTACATTGAGATCCCCGAGGAGTACCGGAAGTTTCCGGGG GCAGTGGGACGACTGAACAAGGCCATTTACGGACTCGTACAGGCGGGGAG GTGCTGGAAGAAAAGGTTTTGCAGCGATATGGCAGCGATTGGATTCAAGC AGGGAAAGGCGGATCCGTGCGTGTTCCGTAAGGTCGTTGACGGCGAGGCG GAAGTGGTGGTGGTCGTTCACGTGGACGATATTCTTGCTCACACCAAGGA CACAGCGACTATGGATAGATTCGCGGCTGAGCTCAGACAAAAGTTTAAAT TGAAGGACATGGGTGACGCCAGGTACTACATGGGCTGTCACATTACTAGG AACCGCAAGGTGCGCGAACTGAAGATCGAGCAACACTTGTACGTGGAGTC GATGGTGGAAAAGTTCGACGTCAAGAAGGGAATCAAGATACCGGCTACGT CGGGGGTGCCAACACTCTCAAAGGCGGACGAGCCGCGGAACCCGGAGGAG AAGGAGAAAGTGAGGAAGTTTCCATACCGGGAAGCAGTGGGGGCGCTTAT ATGGACGGCGAAGATAACACGGCCGGACATTGCAAGCGCAGTACGCGCGA TGGCCAGGTTCTGCGAAAACCCTGCGCCGGCGCATAAGAAGGCAGTGATG AAGATTATGCAGTATCTCCTTCACACG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig5801:10246..11322+

>mRNA_H-elongata_contig5801.13274.1 ID=mRNA_H-elongata_contig5801.13274.1|Name=mRNA_H-elongata_contig5801.13274.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2154bp|location=Sequence derived from alignment at H-elongata_contig5801:10246..11322+ (Himanthalia elongata Himel1 dioecious)
ATGGCCATTCACGCGACGCTGGATATACAGGAACCGAGGAATCGGCGGCA
GGCGATGGAATCGCCAGAATGGAACGATTGGAAGAAAGCAGAGAAAATAG
AGATGCGTGGCATGGTCGATAACTGCGTTTCTAAGCAGGTGGCTTGGCCG
AAGGATAAGGTTGTGGTTGGCATGAAAATGCTCTACAAACGAGAAGTCGG
ACAGGACGGCAAGGTCGAGAAATATAAGTGCCGGCTTGTAGCTCAAGGGT
TCTGGCAGATAGAGGGTGTGCACTATACGGAGAAATACTCACCCACGCCA
TCGACCGCATCAATCCGGATGCTTTTGGCCACAGCAGCGGCCAAGGACCG
TGAGCTGCGCCATTTCGACGCGAAGCAGGCATTCCTGACAGCGGACATCG
ATGAAGAATTGTACATTGAGATCCCCGAGGAGTACCGGAAGTTTCCGGGG
GCAGTGGGACGACTGAACAAGGCCATTTACGGACTCGTACAGGCGGGGAG
GTGCTGGAAGAAAAGGTTTTGCAGCGATATGGCAGCGATTGGATTCAAGC
AGGGAAAGGCGGATCCGTGCGTGTTCCGTAAGGTCGTTGACGGCGAGGCG
GAAGTGGTGGTGGTCGTTCACGTGGACGATATTCTTGCTCACACCAAGGA
CACAGCGACTATGGATAGATTCGCGGCTGAGCTCAGACAAAAGTTTAAAT
TGAAGGACATGGGTGACGCCAGGTACTACATGGGCTGTCACATTACTAGG
AACCGCAAGGTGCGCGAACTGAAGATCGAGCAACACTTGTACGTGGAGTC
GATGGTGGAAAAGTTCGACGTCAAGAAGGGAATCAAGATACCGGCTACGT
CGGGGGTGCCAACACTCTCAAAGGCGGACGAGCCGCGGAACCCGGAGGAG
AAGGAGAAAGTGAGGAAGTTTCCATACCGGGAAGCAGTGGGGGCGCTTAT
ATGGACGGCGAAGATAACACGGCCGGACATTGCAAGCGCAGTACGCGCGA
TGGCCAGGTTCTGCGAAAACCCTGCGCCGGCGCATAAGAAGGCAGTGATG
AAGATTATGCAGTATCTCCTTCACACGATGGCCATTCACGCGACGCTGGA
TATACAGGAACCGAGGAATCGGCGGCAGGCGATGGAATCGCCAGAATGGA
ACGATTGGAAGAAAGCAGAGAAAATAGAGATGCGTGGCATGGTCGATAAC
TGCGTTTCTAAGCAGGTGGCTTGGCCGAAGGATAAGGTTGTGGTTGGCAT
GAAAATGCTCTACAAACGAGAAGTCGGACAGGACGGCAAGGTCGAGAAAT
ATAAGTGCCGGCTTGTAGCTCAAGGGTTCTGGCAGATAGAGGGTGTGCAC
TATACGGAGAAATACTCACCCACGCCATCGACCGCATCAATCCGGATGCT
TTTGGCCACAGCAGCGGCCAAGGACCGTGAGCTGCGCCATTTCGACGCGA
AGCAGGCATTCCTGACAGCGGACATCGATGAAGAATTGTACATTGAGATC
CCCGAGGAGTACCGGAAGTTTCCGGGGGCAGTGGGACGACTGAACAAGGC
CATTTACGGACTCGTACAGGCGGGGAGGTGCTGGAAGAAAAGGTTTTGCA
GCGATATGGCAGCGATTGGATTCAAGCAGGGAAAGGCGGATCCGTGCGTG
TTCCGTAAGGTCGTTGACGGCGAGGCGGAAGTGGTGGTGGTCGTTCACGT
GGACGATATTCTTGCTCACACCAAGGACACAGCGACTATGGATAGATTCG
CGGCTGAGCTCAGACAAAAGTTTAAATTGAAGGACATGGGTGACGCCAGG
TACTACATGGGCTGTCACATTACTAGGAACCGCAAGGTGCGCGAACTGAA
GATCGAGCAACACTTGTACGTGGAGTCGATGGTGGAAAAGTTCGACGTCA
AGAAGGGAATCAAGATACCGGCTACGTCGGGGGTGCCAACACTCTCAAAG
GCGGACGAGCCGCGGAACCCGGAGGAGAAGGAGAAAGTGAGGAAGTTTCC
ATACCGGGAAGCAGTGGGGGCGCTTATATGGACGGCGAAGATAACACGGC
CGGACATTGCAAGCGCAGTACGCGCGATGGCCAGGTTCTGCGAAAACCCT
GCGCCGGCGCATAAGAAGGCAGTGATGAAGATTATGCAGTATCTCCTTCA
CACG
back to top