mRNA_H-elongata_contig57866.13261.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig57866.13261.1 vs. uniprot
Match: D8LS61_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS61_ECTSI) HSP 1 Score: 264 bits (674), Expect = 1.670e-79 Identity = 149/285 (52.28%), Postives = 175/285 (61.40%), Query Frame = 3
Query: 3 VVRHQLGPQSEVYLYLGPETGEVVRNMTAGAASSTVTQFFTVPIDVISQKMMVNGPRGGQVVPTAAAARGEARPAGEMAVATASDQQGTLRRTVAGAGGGSGGTSCEGIQARQGEERGEGRRHISAQNVARQVYRESGLRGFYRGIGVSILQFAPTSAIWWAAYGLYSKAFIQALENFYPSQLPALTAERRKIGAQAAAGLCTGMTTVILTNPLDVLRTRLQVQGRHGDNRTLRSEYRALIAESGPGGLLRGLVPRMLAMAPASVLIVTVYELIKRLSRKAPTTP 857
VVRH LGP S++Y LGPE GE+VRNM+AGAASS V Q FTVP+D+I Q VY ESGLRGFYRG G+S+LQFAPTSAIWWAAYG+YS+AF++AL N P +P LTA++R++G QAAAG CTGMTTV+LTNPLDVLRTRLQV+GR GD+RT+ SEYR L+AESGP GL++GL PR+LAMAPASVLIV+VYELIKRLSRK P P
Sbjct: 96 VVRHHLGPGSDLYQRLGPEKGELVRNMSAGAASSAVMQCFTVPLDIIGQ-----------------------------------------------------------------------------------VYGESGLRGFYRGFGISVLQFAPTSAIWWAAYGVYSRAFVRALGNL-PEPVPELTAQQRQVGGQAAAGFCTGMTTVLLTNPLDVLRTRLQVEGRRGDDRTIASEYRILMAESGPRGLMKGLGPRILAMAPASVLIVSVYELIKRLSRKTPLPP 296
BLAST of mRNA_H-elongata_contig57866.13261.1 vs. uniprot
Match: A0A6H5JPC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPC8_9PHAE) HSP 1 Score: 241 bits (615), Expect = 3.390e-71 Identity = 119/162 (73.46%), Postives = 143/162 (88.27%), Query Frame = 3
Query: 372 ISAQNVARQVYRESGLRGFYRGIGVSILQFAPTSAIWWAAYGLYSKAFIQALENFYPSQLPALTAERRKIGAQAAAGLCTGMTTVILTNPLDVLRTRLQVQGRHGDNRTLRSEYRALIAESGPGGLLRGLVPRMLAMAPASVLIVTVYELIKRLSRKAPTTP 857
++A+ VARQVY ESGLRGFYRG G+S+LQFAPTSAIWWAAYG+YS+AF++AL N P +P LTA++R++G QAAAG CTGMTTV+LTNPLDVLRTRLQV+GR GD+RT+ SEYR L+AESGP GL++GL PR+LA+APASVLIV+VYELIKRLSRK P P
Sbjct: 107 VTAREVARQVYGESGLRGFYRGFGISVLQFAPTSAIWWAAYGVYSRAFVRALGNL-PEPVPKLTAQQRQVGGQAAAGFCTGMTTVLLTNPLDVLRTRLQVEGRRGDDRTIVSEYRILMAESGPRGLMKGLGPRILAVAPASVLIVSVYELIKRLSRKTPLAP 267
BLAST of mRNA_H-elongata_contig57866.13261.1 vs. uniprot
Match: A0A835YRA5_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRA5_9STRA) HSP 1 Score: 181 bits (460), Expect = 7.270e-48 Identity = 121/298 (40.60%), Postives = 156/298 (52.35%), Query Frame = 3
Query: 3 VVRHQLGPQSE--VYLYLGPETGEVVRNMTAGAASSTVTQFFTVPIDVISQKMMVNGPRGGQVVPTAAAARGEARPAGEMAVATASDQQGTLRRTVAGAGGGSGGTSCEGIQARQGEERGEGRRHISAQNVARQVYRESGLRGFYRGIGVSILQFAPTSAIWWAAYGLYS---------------KAFIQALENFYPSQLPALTAERRKIGAQAAAGLCTGMTTVILTNPLDVLRTRLQVQ-GRHGDNRTLRSEYRALIAESGPGGLLRGLVPRMLAMAPASVLIVTVYELIKRLSRK 842
++R LGP+S +Y+ +G + GEVVRNM AGA +S Q TVPIDV+SQ++MV G GG+ PT AAA +AR+VY G+RGFYRG +++QFAPTSA WW+AYGLY K + A + P L + E R+I QA AG G TTV+LTNPLDV+RTRLQV+ G T+ SE RAL A +G L++GL PRM+++APASVL+VT YE IKR+SRK
Sbjct: 108 LLRRYLGPESSPSLYMSMGAQQGEVVRNMVAGAGASVAMQVATVPIDVVSQRLMVAGIAGGEGGPTTAAA------------------------------------------------------------IAREVYATGGVRGFYRGFAAAVMQFAPTSAAWWSAYGLYKXXXXXXXXXXXXXXXKEPLAARIDALPLNL---SEEARQILVQATAGYLAGATTVVLTNPLDVIRTRLQVRRGAAAAGATMLSEARALWAAAGARALMKGLGPRMISVAPASVLVVTTYEYIKRVSRK 342
BLAST of mRNA_H-elongata_contig57866.13261.1 vs. uniprot
Match: A0A7S2V638_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V638_9STRA) HSP 1 Score: 164 bits (415), Expect = 8.410e-42 Identity = 103/282 (36.52%), Postives = 142/282 (50.35%), Query Frame = 3
Query: 3 VVRHQLGPQSEVYLYLGPETGEVVRNMTAGAASSTVTQFFTVPIDVISQKMMVNGPRGGQVVPTAAAARGEARPAGEMAVATASDQQGTLRRTVAGAGGGSGGTSCEGIQARQGEERGEGRRHISAQNVARQVYRESGLRGFYRGIGVSILQFAPTSAIWWAAYGLYSKAFIQALENFYPSQLPALTAERRKIGAQAAAGLCTGMTTVILTNPLDVLRTRLQVQGRHGD--NRTLRSEYRALIAESGPGGLLRGLVPRMLAMAPASVLIVTVYELIKRLSRK 842
V+R +LGP S +Y LGP GE+ RN+ +GA S Q FT+P+DV+SQ+MMV G + P A+ +ARQ+Y + G+RGFY+G+G S++QFAPTSAIWW Y + + ++ A +QA AG G V+LTNPLDV+RTRLQV G NRT +E++ L+A G L +GLVPR++A+APASV+I++VYE IKR+S K
Sbjct: 126 VLRAKLGPGSALYQVLGPTGGELARNLISGAGCSAAFQVFTIPVDVVSQRMMVAGKGDANMRPKASV-------------------------------------------------------------LARQIYEKHGIRGFYKGVGASLMQFAPTSAIWWTTYHAVELHVERVSRPLFSNKDNAARV------SQAIAGFTGGTVAVLLTNPLDVIRTRLQVLGTENSTANRTFVTEFQHLLATEGAKSLTKGLVPRLIAVAPASVIIISVYEFIKRVSVK 340
BLAST of mRNA_H-elongata_contig57866.13261.1 vs. uniprot
Match: A0A7S4NRY9_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NRY9_GUITH) HSP 1 Score: 144 bits (364), Expect = 6.610e-35 Identity = 93/279 (33.33%), Postives = 139/279 (49.82%), Query Frame = 3
Query: 6 VRHQLGPQSEVYLYLGPETGEVVRNMTAGAASSTVTQFFTVPIDVISQKMMVNGPRGGQVVPTAAAARGEARPAGEMAVATASDQQGTLRRTVAGAGGGSGGTSCEGIQARQGEERGEGRRHISAQNVARQVYRESGLRGFYRGIGVSILQFAPTSAIWWAAYGLYSKAFIQALENFYPSQLPALTAERRKIGAQAAAGLCTGMTTVILTNPLDVLRTRLQVQGRHGDNRTLRSEYRALIAESGPGGLLRGLVPRMLAMAPASVLIVTVYELIKRLSRK 842
VRH L +E ++ P+ VVRN AG +S V+Q VPID++SQK M+N G D G+L +V++++ R+ G++GFY+G G S+ +AP+SAIWW +YG Y + +Q+ +F P T+ K +A+AG G+ + TNP+DV RTRLQV+G D LR+ R L + GP LL+G+ R++A P+S++IVTVYEL+KRLS++
Sbjct: 106 VRHHLMHMNERNRFISPKRMNVVRNAVAGGCASLVSQTIVVPIDIVSQKQMMNFGTG--------------------------DSNGSLV------------------------------------HVSKEILRQDGVKGFYKGFGASLCVYAPSSAIWWGSYG-YLRERLQS--HFMP------TSHASKRLTEASAGASAGLVAAVATNPIDVARTRLQVEGHPRDGSNLRTTLRHLWCQEGPKSLLKGVQARIMASVPSSIMIVTVYELVKRLSKR 313
BLAST of mRNA_H-elongata_contig57866.13261.1 vs. uniprot
Match: A0A5J4Y3N1_9CHLO (Uncharacterized protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y3N1_9CHLO) HSP 1 Score: 135 bits (339), Expect = 4.090e-31 Identity = 96/263 (36.50%), Postives = 134/263 (50.95%), Query Frame = 3
Query: 78 NMTAGAASSTVTQFFTVPIDVISQKMMVNGPRGGQVVPTA---AAARGEARPAGEMAVATASDQQGTLRRTVAGAGGGSGGTSCEGIQARQGEERGEGRRHISAQNVARQVYRESGLRGFYRGIGVSILQFAPTSAIWWAAYGLYSKAFIQALENFYPSQLPALTAERRK---IGAQAAAGLCTGMTTVILTNPLDVLRTRLQVQGRHGDNR--TLRSEYRALIAESGPGGLLRGLVPRMLAMAPASVLIVTVYELIKRLSRK 842
N AGA +S VTQ VP+DV+SQ++MVN R Q PT A++ + + A T + T A A GG G + +AR + ++ G+RG YRG G S+ F P+SAIWW+AYG Y KA E + R + Q ++ + +G+T+ +LTNPLDV++TRLQV R D + T R + LIAE GP GLLRG+ PR+ + A S +VT YE +KR+ K
Sbjct: 122 NFIAGAVASLVTQSIIVPVDVVSQRLMVND-RPSQPAPTPNTHASSSNTSSNGSQKAGLTTHHTR--AASTAASAPGGQNGFA-----------------------LARLIVQQDGVRGLYRGFGASVATFVPSSAIWWSAYGAYQKAIWHQYEGLTGRRAEGRMQARSPSEVVAVQTSSAVLSGVTSAVLTNPLDVVKTRLQVAMRQQDGQQPTFRGIAQKLIAEEGPKGLLRGVAPRITSTALWSTCMVTTYEFLKRICLK 358
BLAST of mRNA_H-elongata_contig57866.13261.1 vs. uniprot
Match: UPI0018F4016C (solute carrier family 25 member 44 n=1 Tax=Tachyglossus aculeatus TaxID=9261 RepID=UPI0018F4016C) HSP 1 Score: 125 bits (313), Expect = 4.670e-28 Identity = 86/255 (33.73%), Postives = 123/255 (48.24%), Query Frame = 3
Query: 72 VRNMTAGAASSTVTQFFTVPIDVISQKMMVNGPRGGQVVPTAAAARGEARPAGEMAVATASDQQGTLRRTVAGAGGGSGGTSCEGIQARQGEERGEGRRHISAQNVARQVYRESGLRGFYRGIGVSILQFAPTSAIWWAAYGLYSKAFIQALENFYPSQLPALTAERRKIGAQAAAGLCTGMTTVILTNPLDVLRTRLQVQGRHGDNRTLRSEYRALIAESGPGGLLRGLVPRMLAMAPASVLIVTVYELIKRLS 836
+R++ AG ++S V Q TVPIDV+SQ +MV RG + G +A + +GTL RT ++V RQ++R GLRGFYRG S+L + P SA WW Y Y+ + L P P L QA +G T LTNP+DV+R R+QV+GR +T +R L+AE GP GL +GL R++A P+++++V YE +K+LS
Sbjct: 110 LRSLLAGGSASLVAQSITVPIDVVSQHLMVQR-------------RGPGQELGRFQLARGAGGRGTLGRT---------------------------------RDVVRQIFRADGLRGFYRGYVASLLTYIPNSAAWWPFYHFYA----EQLSRLCPKDCPHLL-------LQAISGPLAAATASTLTNPMDVIRARVQVEGRDSIVQT----FRQLMAEEGPWGLTKGLSARIIAATPSTIVVVVGYETLKKLS 303
BLAST of mRNA_H-elongata_contig57866.13261.1 vs. uniprot
Match: A0A369RWF2_9METZ (Solute carrier family 25 member 44 n=2 Tax=Trichoplax TaxID=10227 RepID=A0A369RWF2_9METZ) HSP 1 Score: 126 bits (316), Expect = 5.400e-28 Identity = 88/277 (31.77%), Postives = 142/277 (51.26%), Query Frame = 3
Query: 66 EVVRNMTAGAASSTVTQFFTVPIDVISQKMMVNGPRGGQVVPTAAAARGE-----------ARPAGEMAVATASDQQGTLRRTVAGAGGGSGGTSCEGIQARQGEE-------RGEGRRHISAQNVARQVYRESGLRGFYRGIGVSILQFAPTSAIWWAAYGLYSKAFIQALENFYPSQLPALTAERRKIGAQAAAGLCTGMTTVILTNPLDVLRTRLQVQGRHGDNRTLRSEYRALIAESGPGGLLRGLVPRMLAMAPASVLIVTVYELIKRLSRK 842
E R AG A+S + Q F VPID++SQK+MV G + + + + + + ++ +A +D+ +R A A +S + + + + + SA+ +A ++++ G+RGFYRG +SIL F P+SAIWW +Y Y+ L F P P L AQA AG G+T+ +L NP+DV+RTR+QV D +++ + + LI E G G +G+ R+++MAP+S++I+ YE IK LS K
Sbjct: 106 EATRGFVAGGAASVIAQSFGVPIDIVSQKLMVQGQQAPESYTSHSPSLKKEIANQDQYDRKSKATTTIASRHTTDRPFAIRNPAAAASXXXXSSSQKSTKTINSPQFRSLYTLSQQDAKLKSAKTIANEIWKAYGIRGFYRGYLISILTFGPSSAIWWGSYAAYN----DLLSKFIPPNTPHLV-------AQATAGATAGITSAVLINPVDVIRTRMQVL----DTKSIIATTKTLIQEEGLAGFTKGMSARVISMAPSSIIIIISYETIKNLSAK 367
BLAST of mRNA_H-elongata_contig57866.13261.1 vs. uniprot
Match: A0A1V9ZQ95_9STRA (Mitochondrial Carrier (MC) Family n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZQ95_9STRA) HSP 1 Score: 123 bits (309), Expect = 1.680e-27 Identity = 85/255 (33.33%), Postives = 126/255 (49.41%), Query Frame = 3
Query: 78 NMTAGAASSTVTQFFTVPIDVISQKMMVNGPRGGQVVPTAAAARGEARPAGEMAVATASDQQGTLRRTVAGAGGGSGGTSCEGIQARQGEERGEGRRHISAQNVARQVYRESGLRGFYRGIGVSILQFAPTSAIWWAAYGLYSKAFIQALENFYPSQLPALTAERRKIGAQAAAGLCTGMTTVILTNPLDVLRTRLQVQGRHGDNRTLRSEYRALIAESGPGGLLRGLVPRMLAMAPASVLIVTVYELIKRLSRK 842
N +GA +S V Q VP+D++SQ+MM++G G + Q T RT +G+ + +A+ +YR G+RGFY+G SIL +AP+SA+WW +YG+ + + L NF + R++ AQA G G+ T I+TNP+DV+RTR Q+ + G T ++ LI G GL G V R++AM P+ VL++T YEL+KRLSRK
Sbjct: 120 NFISGATASVVNQTVIVPLDIVSQRMMIDGQGGPDM------------------------QSKTRHRT-------------QGLMS-----------------IAKDIYRTQGVRGFYKGYVPSILTYAPSSALWWGSYGVVWPHYYRLL-NFDIDPM------WRQMIAQAFGGGTAGVVTAIITNPMDVIRTRTQIHTQFGAVDT----FKYLIKREGIPGLWTGAVARVMAMGPSGVLVITAYELVKRLSRK 309
BLAST of mRNA_H-elongata_contig57866.13261.1 vs. uniprot
Match: UPI001CF3F204 (LOW QUALITY PROTEIN: solute carrier family 25 member 44-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF3F204) HSP 1 Score: 122 bits (307), Expect = 2.590e-27 Identity = 90/257 (35.02%), Postives = 119/257 (46.30%), Query Frame = 3
Query: 72 VRNMTAGAASSTVTQFFTVPIDVISQKMMVNGPRGGQVVPTAAAARGEARPAGEMAVATASDQQGTLRRTVAGAGGGSGGTSCEGIQARQGEERGEGRRHISAQNVARQVYRESGLRGFYRGIGVSILQFAPTSAIWWAAYGLYSKAFIQALENFYPSQLPALTAERRKIGAQAAAGLCTGMTTVILTNPLDVLRTRLQVQGRHGDNRTLRSEYRALIAESGPGGLLRGLVPRMLAMAPASVLIVTVYELIKRLSRK 842
VR AG +S V+Q TVP+DVISQK+MV G QG + G A + R++ R G RG YRG +S++ +APTSAIWW YG Y++ F+ +L L L A AG G TT +TNPLD++RTRLQV G G + + +R L+ E GP GL +GL RML+M P+SV++V YE +KRLS K
Sbjct: 106 VRGFLAGGIASIVSQTITVPVDVISQKLMVQG-------------------------------QGVNSGKLKG-----------------------------ASTIVREIVRCDGPRGLYRGYLISLMTYAPTSAIWWFTYGAYTR-FVGSLVVSGTPHLFVL----------AVAGALAGFTTSTITNPLDIMRTRLQVGG--GKSTVVIHMFRTLLQEEGPTGLTKGLSARMLSMVPSSVIMVLGYETVKRLSLK 289 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57866.13261.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig57866.13261.1 >prot_H-elongata_contig57866.13261.1 ID=prot_H-elongata_contig57866.13261.1|Name=mRNA_H-elongata_contig57866.13261.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=271bp MTAGAASSTVTQFFTVPIDVISQKMMVNGPRGGQVVPTAAAARGEARPAGback to top mRNA from alignment at H-elongata_contig57866:63..3572+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig57866.13261.1 ID=mRNA_H-elongata_contig57866.13261.1|Name=mRNA_H-elongata_contig57866.13261.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3510bp|location=Sequence derived from alignment at H-elongata_contig57866:63..3572+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig57866:63..3572+ >mRNA_H-elongata_contig57866.13261.1 ID=mRNA_H-elongata_contig57866.13261.1|Name=mRNA_H-elongata_contig57866.13261.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1626bp|location=Sequence derived from alignment at H-elongata_contig57866:63..3572+ (Himanthalia elongata Himel1 dioecious)back to top |