mRNA_H-elongata_contig10156.133.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10156.133.1
Unique NamemRNA_H-elongata_contig10156.133.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10156.133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10156contigH-elongata_contig10156:8932..9192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size245
Cds size138
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10156.133.1prot_H-elongata_contig10156.133.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10156 8989..9142 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929554.581347-UTR-H-elongata_contig10156:8931..89881622929554.581347-UTR-H-elongata_contig10156:8931..8988Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10156 8932..8988 -
1691679067.7995627-UTR-H-elongata_contig10156:8931..89881691679067.7995627-UTR-H-elongata_contig10156:8931..8988Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10156 8932..8988 -
1622929554.6303225-UTR-H-elongata_contig10156:9142..91921622929554.6303225-UTR-H-elongata_contig10156:9142..9192Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10156 9143..9192 -
1691679067.8280575-UTR-H-elongata_contig10156:9142..91921691679067.8280575-UTR-H-elongata_contig10156:9142..9192Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10156 9143..9192 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929554.5980132-CDS-H-elongata_contig10156:8988..90791622929554.5980132-CDS-H-elongata_contig10156:8988..9079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10156 8989..9079 -
1691679067.8135674-CDS-H-elongata_contig10156:8988..90791691679067.8135674-CDS-H-elongata_contig10156:8988..9079Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10156 8989..9079 -
1622929554.6121843-CDS-H-elongata_contig10156:9095..91421622929554.6121843-CDS-H-elongata_contig10156:9095..9142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10156 9096..9142 -
1691679067.8206215-CDS-H-elongata_contig10156:9095..91421691679067.8206215-CDS-H-elongata_contig10156:9095..9142Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10156 9096..9142 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10156.133.1

>prot_H-elongata_contig10156.133.1 ID=prot_H-elongata_contig10156.133.1|Name=mRNA_H-elongata_contig10156.133.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
MTSYYRRRAFRSSSQPILKGLSNLAGLVWQPIGCCIRSDDLQGVL*
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mRNA from alignment at H-elongata_contig10156:8932..9192-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10156.133.1 ID=mRNA_H-elongata_contig10156.133.1|Name=mRNA_H-elongata_contig10156.133.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig10156:8932..9192- (Himanthalia elongata Himel1 dioecious)
GGTGAAGATGTCACCTGCGTCATCTCTGGTATTGTGCAGCTCATTGAGGA
ATGACAAGTTACTATAGAAGACGAGCGTTCCGAAGCTCATCCCAGCCGTT
AAAAATATCCAAGGATATTGAAGGGGCTTTCTAATCTAGCCGGCTTAGTT
TGGCAACCAATCGGCTGTTGTATTCGCAGTGATGATCTGCAAGGCGTCCT
GTGACTGCTCCACTAGGTCTATTTGGTCCCGATTTTGTAAGCTTCAGCAT
CCCGAAGAATG
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Coding sequence (CDS) from alignment at H-elongata_contig10156:8932..9192-

>mRNA_H-elongata_contig10156.133.1 ID=mRNA_H-elongata_contig10156.133.1|Name=mRNA_H-elongata_contig10156.133.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig10156:8932..9192- (Himanthalia elongata Himel1 dioecious)
ATGACAAGTTACTATAGAAGACGAGCGTTCCGAAGCTCATCCCAGCCATG
ACAAGTTACTATAGAAGACGAGCGTTCCGAAGCTCATCCCAGCCGATATT
GAAGGGGCTTTCTAATCTAGCCGGCTTAGTTTGGCAACCAATCGGCTGTT
GTATTCGCAGTGATGATCTGCAAGGCGTCCTGTGAGATATTGAAGGGGCT
TTCTAATCTAGCCGGCTTAGTTTGGCAACCAATCGGCTGTTGTATTCGCA
GTGATGATCTGCAAGGCGTCCTGTGA
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