mRNA_H-elongata_contig57507.13220.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57507.13220.1
Unique NamemRNA_H-elongata_contig57507.13220.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig57507.13220.1 vs. uniprot
Match: D8LF98_ECTSI (SH3 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF98_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 7.540e-72
Identity = 114/154 (74.03%), Postives = 134/154 (87.01%), Query Frame = 1 
Query:    1 VDYAGGAENPGNKGGIIDKLSTGRRRFKENIAQKTGKEAVDNTEFQERFQRVTELRHHVTKVRDAMKRQLDCSRALCMACADLGNACSEANIRDVQFQNTQFQLDEDLRKRLDEAIAHALESVDNKLAPFVELEKMVVNRNNLKLDYDHYVRKV 462
            +D  GGA+  G KGGIIDK STGRRR KENIAQKTGKEAVDN+EF+ER QRV +L+  V KVRDAMKRQLDCSRALC+ACADLGNACSE  +RDV FQN QFQLDED+RK+LD A+A A+ES++NK+APF EL+KM+++RN LKLDYDHY+RKV
Sbjct:   31 LDVGGGADPAGGKGGIIDKFSTGRRRLKENIAQKTGKEAVDNSEFEERSQRVADLKEKVGKVRDAMKRQLDCSRALCLACADLGNACSEVGLRDVGFQNAQFQLDEDMRKQLDAAVAKAVESLENKMAPFAELDKMIMSRNKLKLDYDHYMRKV 184
[Close]
BLAST of mRNA_H-elongata_contig57507.13220.1 vs. uniprot
Match: A0A835YV50_9STRA (SH3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV50_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.020e-37
Identity = 73/146 (50.00%), Postives = 97/146 (66.44%), Query Frame = 1 
Query:   25 NPGNKGGIIDKLSTGRRRFKENIAQKTGKEAVDNTEFQERFQRVTELRHHVTKVRDAMKRQLDCSRALCMACADLGNACSEANIRDVQFQNTQFQLDEDLRKRLDEAIAHALESVDNKLAPFVELEKMVVNRNNLKLDYDHYVRKV 462
            N  +  GI  K++  RRRF E + QK GKE  D+ +F++R +   +L   V KVRD+MK  LD +RA+     DL NAC +A+ RD  F  TQ QLD+ +R  LD+++  AL+S+D KLAPF EL++ V  RNNLKLDYDHYVRKV
Sbjct:   31 NDNSGAGIKGKMAVNRRRFNEKLGQKMGKEGTDDADFEDRHRATQDLHFKVCKVRDSMKALLDATRAMSQRAVDLSNACGDADARDQDFITTQLQLDQAMRSMLDDSVGKALDSLDRKLAPFKELDERVKTRNNLKLDYDHYVRKV 176
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57507.13220.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF98_ECTSI7.540e-7274.03SH3 domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YV50_9STRA1.020e-3750.00SH3 domain-containing protein n=1 Tax=Tribonema mi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57507contigH-elongata_contig57507:2517..3492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.4
Seed ortholog evalue7.4e-59
Seed eggNOG ortholog2880.D8LF98
KEGG koko:K10356,ko:K12562,ko:K21421
KEGG TC5.B.1.1.1
KEGG Pathwayko04066,ko04144,ko04145,ko04216,ko04217,ko04621,ko04666,ko04670,ko04933,ko05140,map04066,map04144,map04145,map04216,map04217,map04621,map04666,map04670,map04933,map05140
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0162@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03036,ko04131,ko04147,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSH3 domain
Ec32 orthologEc-01_004150.1
Exons2
Model size486
Cds size486
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930934.3911886-CDS-H-elongata_contig57507:2516..26901622930934.3911886-CDS-H-elongata_contig57507:2516..2690Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57507 2517..2690 +
1691679630.9738324-CDS-H-elongata_contig57507:2516..26901691679630.9738324-CDS-H-elongata_contig57507:2516..2690Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57507 2517..2690 +
1622930934.4086075-CDS-H-elongata_contig57507:3180..34921622930934.4086075-CDS-H-elongata_contig57507:3180..3492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57507 3181..3492 +
1691679630.985292-CDS-H-elongata_contig57507:3180..34921691679630.985292-CDS-H-elongata_contig57507:3180..3492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57507 3181..3492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57507.13220.1prot_H-elongata_contig57507.13220.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57507 2517..3492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57507.13220.1

>prot_H-elongata_contig57507.13220.1 ID=prot_H-elongata_contig57507.13220.1|Name=mRNA_H-elongata_contig57507.13220.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
VDYAGGAENPGNKGGIIDKLSTGRRRFKENIAQKTGKEAVDNTEFQERFQ
RVTELRHHVTKVRDAMKRQLDCSRALCMACADLGNACSEANIRDVQFQNT
QFQLDEDLRKRLDEAIAHALESVDNKLAPFVELEKMVVNRNNLKLDYDHY
VRKVWYEICWS*
back to top

mRNA from alignment at H-elongata_contig57507:2517..3492+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57507.13220.1 ID=mRNA_H-elongata_contig57507.13220.1|Name=mRNA_H-elongata_contig57507.13220.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=976bp|location=Sequence derived from alignment at H-elongata_contig57507:2517..3492+ (Himanthalia elongata Himel1 dioecious)
GTTGATTATGCAGGCGGTGCGGAAAACCCTGGCAACAAGGGTGGAATCAT
CGATAAGCTAAGCACCGGACGACGGCGCTTCAAGGAAAATATCGCCCAGA
AGACAGGAAAGGAGGCGGTGGACAACACGGAGTTCCAGGAGAGGTTTCAG
CGGGTGACGGAGCTTCGACATCATGTGCGATAAGCTCCTCTACACGATTG
TCCTGTACTGTACATAATGAACTATTTTGTTTGCTTAGCTGTACCGTGGG
CCGCGATGCGGTATCCATCGAAAAGCGCAACGACCTGATGTCCCAGCGAA
GCGATGTTTGTACATGAGGCATGGTTCTCGTTCATCATGTAATTCCCCGA
CCTGTGCGGCTGCTACCTAATATTTCAGCAAGGCCCTAGCCACAAAGCGC
AGCGGCAGTGATATACTCGTTTTCACAATTTGTGTAACGATGTGTCTGAT
ACTGTACCATAAGCAAGGTCTAATACAAAAACAGCACGGTATTGTACACT
CTAATACAAAAACATTTTGTCTTTTTAGTGCAGGGTAGACTTAACCTGTA
CCCCTACCGCGTAAAAATCATCATGAGTCCACTTTCCTCCGTCTCCACCC
CGAACTTTTCCTGGATATACACTGTACTTTATATATTATATTTCACCCCG
CGATGTCGTTTAAGGTCACCAAGGTTCGCGATGCGATGAAGCGGCAGCTG
GACTGCTCGCGGGCGTTGTGCATGGCTTGCGCCGACCTGGGGAACGCTTG
CTCAGAGGCCAACATTCGCGACGTTCAGTTCCAAAACACGCAGTTCCAGC
TGGACGAGGATCTGAGGAAGCGCCTGGACGAGGCAATTGCGCACGCGCTA
GAATCGGTCGACAACAAGCTCGCCCCGTTCGTGGAGCTCGAGAAGATGGT
GGTGAATAGGAACAACCTTAAGCTTGACTACGATCACTATGTCCGCAAGG
TGTGGTACGAAATATGTTGGTCGTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig57507:2517..3492+

>mRNA_H-elongata_contig57507.13220.1 ID=mRNA_H-elongata_contig57507.13220.1|Name=mRNA_H-elongata_contig57507.13220.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig57507:2517..3492+ (Himanthalia elongata Himel1 dioecious)
GTTGATTATGCAGGCGGTGCGGAAAACCCTGGCAACAAGGGTGGAATCAT
CGATAAGCTAAGCACCGGACGACGGCGCTTCAAGGAAAATATCGCCCAGA
AGACAGGAAAGGAGGCGGTGGACAACACGGAGTTCCAGGAGAGGTTTCAG
CGGGTGACGGAGCTTCGACATCATGTTGATTATGCAGGCGGTGCGGAAAA
CCCTGGCAACAAGGGTGGAATCATCGATAAGCTAAGCACCGGACGACGGC
GCTTCAAGGAAAATATCGCCCAGAAGACAGGAAAGGAGGCGGTGGACAAC
ACGGAGTTCCAGGAGAGGTTTCAGCGGGTGACGGAGCTTCGACATCATGT
CACCAAGGTTCGCGATGCGATGAAGCGGCAGCTGGACTGCTCGCGGGCGT
TGTGCATGGCTTGCGCCGACCTGGGGAACGCTTGCTCAGAGGCCAACATT
CGCGACGTTCAGTTCCAAAACACGCAGTTCCAGCTGGACGAGGATCTGAG
GAAGCGCCTGGACGAGGCAATTGCGCACGCGCTAGAATCGGTCGACAACA
AGCTCGCCCCGTTCGTGGAGCTCGAGAAGATGGTGGTGAATAGGAACAAC
CTTAAGCTTGACTACGATCACTATGTCCGCAAGGTGTGGTACGAAATATG
TTGGTCGTAGGTCACCAAGGTTCGCGATGCGATGAAGCGGCAGCTGGACT
GCTCGCGGGCGTTGTGCATGGCTTGCGCCGACCTGGGGAACGCTTGCTCA
GAGGCCAACATTCGCGACGTTCAGTTCCAAAACACGCAGTTCCAGCTGGA
CGAGGATCTGAGGAAGCGCCTGGACGAGGCAATTGCGCACGCGCTAGAAT
CGGTCGACAACAAGCTCGCCCCGTTCGTGGAGCTCGAGAAGATGGTGGTG
AATAGGAACAACCTTAAGCTTGACTACGATCACTATGTCCGCAAGGTGTG
GTACGAAATATGTTGGTCGTAG
back to top