prot_H-elongata_contig57329.13198.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig57329.13198.1
Unique Nameprot_H-elongata_contig57329.13198.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length217
Homology
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: D8LSF2_ECTSI (SDH1, succinate dehydrogenase subunit 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF2_ECTSI)

HSP 1 Score: 348 bits (893), Expect = 2.270e-115
Identity = 175/210 (83.33%), Postives = 196/210 (93.33%), Query Frame = 0
Query:    1 QVISPKKHADGTM-EHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 209
            +VI PKK  DG + +HDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIA+I+KPGDKVAEAPKS+TEKS+A++D+TRFADG TPVA+LRLKLQKEMQDHAAVYRTQESL EGV RVD VV +F ++ V D+SLIWNT+LIEAMELENLLSN+ACT+HAAEARKE+RGAHAREDFPDRLDD WMKHS+TYFDY+TGKTKV
Sbjct:  306 EVIRPKKDGDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVNDFSDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKV 515          
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: A0A6H5KSI2_9PHAE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI2_9PHAE)

HSP 1 Score: 346 bits (888), Expect = 2.830e-113
Identity = 174/210 (82.86%), Postives = 196/210 (93.33%), Query Frame = 0
Query:    1 QVISPKKHADGTM-EHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 209
            +VI PKK  DG + +HDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIA+I+KPGDKVAEAPK++TEKS+A++D+TRFADG TPVA+LRLKLQKEMQDHAAVYRTQESL EGV RVD VV +F ++ V D+SLIWNT+LIEAMELENLLSN+ACT+HAAEARKE+RGAHAREDFPDRLDD WMKHS+TYFDY+TGKTKV
Sbjct:  416 EVIRPKKDGDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKAQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVKDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKV 625          
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: A0A835YUP3_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUP3_9STRA)

HSP 1 Score: 288 bits (736), Expect = 6.900e-91
Identity = 146/209 (69.86%), Postives = 175/209 (83.73%), Query Frame = 0
Query:    1 QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 209
            +V+ P+K+A+G ++ DAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKV +APK+ET++++ ++D  R+A G T  AELRLKLQ+ MQD+AAVYRTQE+L  GV  VD VV EF ++ V D+SLIWNT+LIE MEL NLL N+ACT+HAAEARKE+RGAHAREDF DR D  WMKH++  FD   GKT +
Sbjct:  384 EVVKPRKNANGDIDQDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVQDAPKAETDRALGALDDMRYARGQTSTAELRLKLQRVMQDNAAVYRTQETLAHGVVSVDAVVKEFGDVGVTDRSLIWNTDLIETMELRNLLGNAACTMHAAEARKESRGAHAREDFKDRDDVNWMKHTLATFDESKGKTHL 592          
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: A0A7S3ZYC3_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=3 Tax=cellular organisms TaxID=131567 RepID=A0A7S3ZYC3_9STRA)

HSP 1 Score: 285 bits (730), Expect = 1.270e-89
Identity = 143/210 (68.10%), Postives = 172/210 (81.90%), Query Frame = 0
Query:    1 QVISPKKHADGTM-EHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 209
            +VI  KK A G + +HDA+VPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGD V   P+   +K++  +D  R + GPTP AE+R  +QK MQDHAAVYRTQESL EGV ++D VV  F+++ V+D+SLIWNT+L+E +EL NLL N+A T+HAAEARKE+RGAHARED PDRLDD+WMKH++TY+D  T KT V
Sbjct:  419 EVIHQKKDASGNVVDHDAVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDAVPPLPRDAGQKTLQDLDDVRHSSGPTPTAEIRRDMQKTMQDHAAVYRTQESLAEGVTKIDKVVDSFQDVGVSDRSLIWNTDLVETLELRNLLPNAAATMHAAEARKESRGAHAREDCPDRLDDDWMKHTMTYYDEATRKTSV 628          
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: W7TSA7_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSA7_9STRA)

HSP 1 Score: 267 bits (682), Expect = 1.500e-82
Identity = 133/209 (63.64%), Postives = 170/209 (81.34%), Query Frame = 0
Query:    1 QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 209
            +VI+PKK ADG+++ D ++PGLFAAGEAACASVHGANRLGANSLLDIVVFGRA ALRIADIAKPGDKV   P    ++S+  +D+ RFA G T  A +R K+QK MQ+HAAVYRTQ+SL EG  ++D+V+  ++++ V D+SL+WNT+LIE++EL NLLSN+A T++AAEARKE+RGAHAREDF +R D  WM H+I  FDY+T KT +
Sbjct:  414 EVIAPKKKADGSLDPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTI 622          
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: B8CCT7_THAPS (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCT7_THAPS)

HSP 1 Score: 263 bits (671), Expect = 5.160e-81
Identity = 131/209 (62.68%), Postives = 165/209 (78.95%), Query Frame = 0
Query:    1 QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 209
            +VI    +ADG+   D +VPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACA RIA+IAKPGD +A+AP      S+A +D+ RFA G TP + +R ++Q  MQD AAVYRT+E L EG + +D+VV  F +++V DKSLIWNT+L+E +EL NLL  +A T+H+AE RKE+RGAHA E++PDRLDDEWMKH++ YFD + GKTK+
Sbjct:  404 EVIRTDFNADGSFNSDVVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACANRIAEIAKPGDAIADAPADVGMDSVAELDKLRFATGSTPTSVIRGEMQHLMQDKAAVYRTEELLAEGKKEIDEVVQSFNDVHVTDKSLIWNTDLVETLELRNLLGCAATTMHSAENRKESRGAHAHENYPDRLDDEWMKHTLAYFDEKEGKTKI 612          
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: A0A2R5G9I9_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G9I9_9STRA)

HSP 1 Score: 262 bits (670), Expect = 5.680e-81
Identity = 137/209 (65.55%), Postives = 166/209 (79.43%), Query Frame = 0
Query:    1 QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 209
            QV++P K      + D +VPGL+AAGEAACASVHGANRLGANSLLDIVVFGRACA  I +  KP  KV E P    E SIA++D+ R A+G TP A+LRL+LQK MQ+HAAV+RT E L EGV +VD+VV EF +I V D+SLIWN+++IE +EL+NLL N+ACT+HAAEARKE+RGAHA ED+PDR D EWMKH+IT+FD ETGK KV
Sbjct:  399 QVVNPTKD-----DPDRVVPGLYAAGEAACASVHGANRLGANSLLDIVVFGRACANHIGETLKPSKKV-ELPAGAGEDSIANLDKIRNANGSTPTADLRLRLQKTMQNHAAVFRTNEVLAEGVVKVDEVVQEFSDIKVTDRSLIWNSDVIETLELQNLLGNAACTMHAAEARKESRGAHAHEDYPDRNDKEWMKHTITHFDTETGKVKV 601          
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: F0YDU4_AURAN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDU4_AURAN)

HSP 1 Score: 262 bits (670), Expect = 6.080e-81
Identity = 138/210 (65.71%), Postives = 161/210 (76.67%), Query Frame = 0
Query:    1 QVISPKKHADGTM-EHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 209
            +VI      DG++ +HD +VPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIA+PG  V   P    EK+IA +D  RF+ GP P A++R  +QK MQDHAAVYRT ESL EG  ++   V  F +I V D+SLIWNT+LIE +EL NLL N+A T+ AAEARKE+RGAHARED PDRLDDEWMKH++ YFD  T KT V
Sbjct:  395 EVIRQVTGPDGSVIDHDEVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAEPGAPVPPLPADAAEKTIADVDAIRFSSGPRPTADVRKDMQKTMQDHAAVYRTAESLAEGCEKIQKNVEAFADIGVTDRSLIWNTDLIETIELRNLLPNAATTMFAAEARKESRGAHAREDTPDRLDDEWMKHTMCYFDEATNKTTV 604          
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: A0A7S2RM10_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RM10_9STRA)

HSP 1 Score: 261 bits (666), Expect = 3.030e-80
Identity = 131/209 (62.68%), Postives = 164/209 (78.47%), Query Frame = 0
Query:    1 QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 209
            +VI  KK+ADGT +HD+IVPGLFAAGE ACASVHGANRLGANSLLDIVVFGRACA RIA+IAKPG  V   PK   + SIA +D+ R+A G  P A LRL++Q+ MQ++AAVYRT E L EG  ++D VV +F+++  +D+SLIWNT+LIE +EL NLL N++ T+HAA  R E+RGAHARED PDR D+ WMKH++ YFD  TG++ V
Sbjct:  407 EVIRVKKNADGTEDHDSIVPGLFAAGEVACASVHGANRLGANSLLDIVVFGRACANRIAEIAKPGAPVPPLPKDAGDASIADLDKLRYAKGDVPTASLRLEMQQVMQENAAVYRTAEVLSEGCEKIDAVVDKFQHVGTSDRSLIWNTDLIETLELRNLLGNASTTMHAASQRTESRGAHAREDTPDRDDENWMKHTMAYFDESTGRSTV 615          
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Match: A0A7S4KAF0_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4KAF0_9STRA)

HSP 1 Score: 259 bits (663), Expect = 1.190e-79
Identity = 127/212 (59.91%), Postives = 168/212 (79.25%), Query Frame = 0
Query:    1 QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVAEA---PKSETEKSIASMDRTRFADGPTPVAELRLKLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLIEAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYFDYETGKTKV 209
            +V+  K  + G  E D +VPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAD+A PGD + +A   P     +S+A +D+ R+ADG TP +E+R ++Q  MQDHAAVYRT E LEEG  ++D+VV  F ++ V D+SL+WNT+L+E +EL NLL+N++ T+H+A  RKE+RGAHA E++PDR D+EWMKH+++YF+ ETGK++V
Sbjct:  420 EVVRTKFDSKGEFEQDEVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADLAAPGDDIPDATGGPDGAGMQSLADLDKLRYADGSTPTSEIRGEMQAVMQDHAAVYRTSELLEEGAGKIDEVVQSFADVGVTDRSLVWNTDLVETLELRNLLANASTTMHSANVRKESRGAHAHENYPDRDDNEWMKHTVSYFNEETGKSEV 631          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57329.13198.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSF2_ECTSI2.270e-11583.33SDH1, succinate dehydrogenase subunit 1 n=1 Tax=Ec... [more]
A0A6H5KSI2_9PHAE2.830e-11382.86Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
A0A835YUP3_9STRA6.900e-9169.86Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
A0A7S3ZYC3_9STRA1.270e-8968.10Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
W7TSA7_9STRA1.500e-8263.64Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
B8CCT7_THAPS5.160e-8162.68Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
A0A2R5G9I9_9STRA5.680e-8165.55Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
F0YDU4_AURAN6.080e-8165.71Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
A0A7S2RM10_9STRA3.030e-8062.68Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
A0A7S4KAF0_9STRA1.190e-7959.91Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015939Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminalPFAMPF02910Succ_DH_flav_Ccoord: 99..209
e-value: 2.4E-36
score: 124.5
IPR036188FAD/NAD(P)-binding domain superfamilyGENE3D3.50.50.60coord: 2..69
e-value: 4.2E-22
score: 80.4
IPR036188FAD/NAD(P)-binding domain superfamilySUPERFAMILY51905FAD/NAD(P)-binding domaincoord: 10..69
NoneNo IPR availableGENE3D1.20.58.100coord: 70..186
e-value: 5.9E-38
score: 131.7
NoneNo IPR availablePANTHERPTHR11632SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNITcoord: 13..208
NoneNo IPR availablePANTHERPTHR11632:SF51SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIALcoord: 13..208
IPR003953FAD-dependent oxidoreductase 2, FAD binding domainPFAMPF00890FAD_binding_2coord: 14..44
e-value: 1.2E-8
score: 34.4
IPR037099Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamilySUPERFAMILY46977Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domaincoord: 90..204

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57329contigH-elongata_contig57329:425..3610 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57329.13198.1mRNA_H-elongata_contig57329.13198.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig57329 425..3610 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig57329.13198.1 ID=prot_H-elongata_contig57329.13198.1|Name=mRNA_H-elongata_contig57329.13198.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=217bp
QVISPKKHADGTMEHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVF
GRACALRIADIAKPGDKVAEAPKSETEKSIASMDRTRFADGPTPVAELRL
KLQKEMQDHAAVYRTQESLEEGVRRVDDVVGEFKNINVADKSLIWNTNLI
EAMELENLLSNSACTIHAAEARKETRGAHAREDFPDRLDDEWMKHSITYF
DYETGKTKVMRWGRRG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015939Fum_Rdtase/Succ_DH_flav-like_C
IPR036188FAD/NAD-bd_sf
IPR003953FAD-binding_2
IPR037099Fum_R/Succ_DH_flav-like_C_sf