mRNA_H-elongata_contig57308.13197.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig57308.13197.1
Unique NamemRNA_H-elongata_contig57308.13197.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig57308.13197.1 vs. uniprot
Match: D8LGP8_ECTSI (AB hydrolase-1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGP8_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 3.330e-23
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 1
Query:    7 QNPVILCHGYGMGAAAWHTVLKDLSASHHVFATDWLGYGLSSRPKWEAKGVGETEAFFVESLER 198
            + PV+LCHGYGMG   WH  L +L+AS HV A DWLG GLSSRP+W+ +GV ETEAFFV+SLER
Sbjct:  135 EIPVVLCHGYGMGVGGWHLNLGELTASTHVMAKDWLGCGLSSRPRWDLEGVKETEAFFVDSLER 198          
BLAST of mRNA_H-elongata_contig57308.13197.1 vs. uniprot
Match: A0A835ZEV4_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEV4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.030e-15
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 1
Query:    7 QNPVILCHGYGMGAAAWHTVLKDLSASHHVFATDWLGYGLSSRPKWEAKGVGETEAFFVESLER 198
            + P++LCHGYG GAAA+      L+A+ HV+A DW+GYG SSRPK+  KGV  TE  F++ +ER
Sbjct:   52 KPPLVLCHGYGQGAAAFALNFPHLTANLHVYAKDWMGYGQSSRPKFTPKGVDATEEHFIKYMER 115          
BLAST of mRNA_H-elongata_contig57308.13197.1 vs. uniprot
Match: A0A815WEX5_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A815WEX5_9BILA)

HSP 1 Score: 65.1 bits (157), Expect = 2.700e-11
Identity = 31/67 (46.27%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    1 LRQNPVILCHGYGMGAAAWHTVLKDLSAS-HHVFATDWLGYGLSSRPKWEAKGVGETEAFFVESLER 198
            L +  ++L HG+G G   W   L  LS+   +V+A D LG G SSRP+++AK VGE+E FF++SLE+
Sbjct:   84 LHETNLVLLHGFGAGIGFWLLNLDHLSSKFRNVYALDMLGCGRSSRPRFQAKTVGESELFFIDSLEK 150          
BLAST of mRNA_H-elongata_contig57308.13197.1 vs. uniprot
Match: A0A8J2FHK0_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2FHK0_9DINO)

HSP 1 Score: 59.3 bits (142), Expect = 1.260e-8
Identity = 25/46 (54.35%), Postives = 30/46 (65.22%), Query Frame = 1
Query:   16 VILCHGYGMGAAAWHTVLKDLSAS---HHVFATDWLGYGLSSRPKW 144
            ++LC GYGMG A W  V+  L      H + A DWLG+GLSSRPKW
Sbjct:  506 IVLCPGYGMGCATWGMVVPSLRQKFPDHFIHAIDWLGWGLSSRPKW 551          
BLAST of mRNA_H-elongata_contig57308.13197.1 vs. uniprot
Match: A0A7S1ZLF5_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZLF5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 4.320e-8
Identity = 33/73 (45.21%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    4 RQN---PVILCHGYGMGAAAWHTVLKDLSASHH--VFATDWLGYGLSSRPKWEA----KGVGETEAFFVESLE 195
            +QN   P+++ HGY  G   ++  L  LS +H   ++A D LG+GLSSRPK+E       V   EAFFVESLE
Sbjct:  134 KQNETPPLVMLHGYANGCLYFYRNLVSLSQTHFPTIYALDMLGWGLSSRPKFETVPDNTSVESAEAFFVESLE 206          
BLAST of mRNA_H-elongata_contig57308.13197.1 vs. uniprot
Match: A0A6P7RAA5_MUSCR (1-acylglycerol-3-phosphate O-acyltransferase ABHD5 isoform X3 n=6 Tax=Muroidea TaxID=337687 RepID=A0A6P7RAA5_MUSCR)

HSP 1 Score: 57.4 bits (137), Expect = 4.890e-8
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    7 QNPVILCHGYGMGAAAWHTVLKDLSASHHVFATDWLGYGLSSRPKWEAKGVGETEAFFVESLE--RC 201
            + P++L HG+G G   W    +DLS    V+A D LG+G SSRP++++    E E  FVES+E  RC
Sbjct:   77 KTPLVLLHGFGGGLGLWALNFEDLSTDRPVYAFDLLGFGRSSRPRFDSDAE-EVENQFVESIEEWRC 142          
BLAST of mRNA_H-elongata_contig57308.13197.1 vs. uniprot
Match: A0A6J0DQ50_PERMB (1-acylglycerol-3-phosphate O-acyltransferase ABHD5 isoform X2 n=1 Tax=Peromyscus maniculatus bairdii TaxID=230844 RepID=A0A6J0DQ50_PERMB)

HSP 1 Score: 57.4 bits (137), Expect = 5.070e-8
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    7 QNPVILCHGYGMGAAAWHTVLKDLSASHHVFATDWLGYGLSSRPKWEAKGVGETEAFFVESLE--RC 201
            + P++L HG+G G   W    +DLS    V+A D LG+G SSRP++++    E E  FVES+E  RC
Sbjct:    9 KTPLVLLHGFGGGLGLWALNFEDLSTDRPVYAFDLLGFGRSSRPRFDSDAE-EVENQFVESIEEWRC 74          
BLAST of mRNA_H-elongata_contig57308.13197.1 vs. uniprot
Match: G3H972_CRIGR (1-acylglycerol-3-phosphate O-acyltransferase ABHD5 n=1 Tax=Cricetulus griseus TaxID=10029 RepID=G3H972_CRIGR)

HSP 1 Score: 57.4 bits (137), Expect = 5.410e-8
Identity = 29/67 (43.28%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    7 QNPVILCHGYGMGAAAWHTVLKDLSASHHVFATDWLGYGLSSRPKWEAKGVGETEAFFVESLE--RC 201
            + P++L HG+G G   W    +DLS    V+A D LG+G SSRP++++    E E  FVES+E  RC
Sbjct:   34 KTPLVLLHGFGGGLGLWALNFEDLSTDRPVYAFDLLGFGRSSRPRFDSDAE-EVENQFVESIEEWRC 99          
BLAST of mRNA_H-elongata_contig57308.13197.1 vs. uniprot
Match: A0A8J1ZEV9_9DINO (Hypothetical protein (Fragment) n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1ZEV9_9DINO)

HSP 1 Score: 56.6 bits (135), Expect = 5.430e-8
Identity = 27/49 (55.10%), Postives = 31/49 (63.27%), Query Frame = 1
Query:   16 VILCHGYGMGAAAWHTVLKDLSAS---HHVFATDWLGYGLSSRPKWEAK 153
            V+L HG+G+GA      L+ LS     H VFA DWLGYGLSSRP W  K
Sbjct:  161 VVLWHGFGLGAGGCSGALRALSEQFPDHAVFACDWLGYGLSSRPSWLQK 209          
BLAST of mRNA_H-elongata_contig57308.13197.1 vs. uniprot
Match: A0A7S1ALR5_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1ALR5_NOCSC)

HSP 1 Score: 57.4 bits (137), Expect = 5.810e-8
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 1
Query:   10 NPVILCHGYGMGAAAWHTVLKDLSA-SHHVFATDWLGYGLSSRPKWEAKG-VGETEAFFVESLE 195
            +P++L HG+GMGAA+W   L+ LS     V + DW G G S+RP +  +G V   E+FFVE +E
Sbjct:   78 HPLVLVHGFGMGAASWSGSLEALSGCGRDVVSIDWPGSGRSTRPSFPLRGGVEACESFFVERIE 141          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57308.13197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGP8_ECTSI3.330e-2367.19AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
A0A835ZEV4_9STRA1.030e-1553.13Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]
A0A815WEX5_9BILA2.700e-1146.27Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A8J2FHK0_9DINO1.260e-854.35Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A7S1ZLF5_9STRA4.320e-845.21Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A6P7RAA5_MUSCR4.890e-843.281-acylglycerol-3-phosphate O-acyltransferase ABHD5... [more]
A0A6J0DQ50_PERMB5.070e-843.281-acylglycerol-3-phosphate O-acyltransferase ABHD5... [more]
G3H972_CRIGR5.410e-843.281-acylglycerol-3-phosphate O-acyltransferase ABHD5... [more]
A0A8J1ZEV9_9DINO5.430e-855.10Hypothetical protein (Fragment) n=1 Tax=Amoebophry... [more]
A0A7S1ALR5_NOCSC5.810e-845.31Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57308contigH-elongata_contig57308:3425..3631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue5.4e-19
Seed eggNOG ortholog2880.D8LGP8
KEGG rclassRC00037,RC00039,RC00094
KEGG koko:K13535,ko:K13699
KEGG ReactionR09038,R09381
KEGG Pathwayko00564,ko04923,map00564,map04923
EggNOG free text desc.1-acylglycerol-3-phosphate O-acyltransferase activity
EggNOG OGsCOG0596@1,KOG4409@2759
EC2.3.1.51
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01004
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930932.03484-CDS-H-elongata_contig57308:3424..36311622930932.03484-CDS-H-elongata_contig57308:3424..3631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57308 3425..3631 +
1691679629.9799967-CDS-H-elongata_contig57308:3424..36311691679629.9799967-CDS-H-elongata_contig57308:3424..3631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig57308 3425..3631 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57308.13197.1prot_H-elongata_contig57308.13197.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig57308 3425..3631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig57308.13197.1

>prot_H-elongata_contig57308.13197.1 ID=prot_H-elongata_contig57308.13197.1|Name=mRNA_H-elongata_contig57308.13197.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
LRQNPVILCHGYGMGAAAWHTVLKDLSASHHVFATDWLGYGLSSRPKWEA
KGVGETEAFFVESLERCVK
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mRNA from alignment at H-elongata_contig57308:3425..3631+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig57308.13197.1 ID=mRNA_H-elongata_contig57308.13197.1|Name=mRNA_H-elongata_contig57308.13197.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig57308:3425..3631+ (Himanthalia elongata Himel1 dioecious)
CTGCGACAGAATCCTGTTATATTATGCCACGGGTACGGCATGGGCGCGGC AGCCTGGCATACGGTGCTAAAAGATCTAAGCGCTTCGCATCACGTATTCG CTACTGACTGGTTAGGCTATGGGCTGTCGTCGCGACCCAAGTGGGAAGCG AAAGGCGTTGGAGAAACGGAGGCGTTTTTCGTCGAGTCGCTTGAGAGGTG CGTAAAA
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Coding sequence (CDS) from alignment at H-elongata_contig57308:3425..3631+

>mRNA_H-elongata_contig57308.13197.1 ID=mRNA_H-elongata_contig57308.13197.1|Name=mRNA_H-elongata_contig57308.13197.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig57308:3425..3631+ (Himanthalia elongata Himel1 dioecious)
CTGCGACAGAATCCTGTTATATTATGCCACGGGTACGGCATGGGCGCGGC
AGCCTGGCATACGGTGCTAAAAGATCTAAGCGCTTCGCATCACGTATTCG
CTACTGACTGGTTAGGCTATGGGCTGTCGTCGCGACCCAAGTGGGAAGCG
AAAGGCGTTGGAGAAACGGAGGCGTTTTTCGTCGAGTCGCTTGAGAGGTG
CGTAAAACTGCGACAGAATCCTGTTATATTATGCCACGGGTACGGCATGG
GCGCGGCAGCCTGGCATACGGTGCTAAAAGATCTAAGCGCTTCGCATCAC
GTATTCGCTACTGACTGGTTAGGCTATGGGCTGTCGTCGCGACCCAAGTG
GGAAGCGAAAGGCGTTGGAGAAACGGAGGCGTTTTTCGTCGAGTCGCTTG
AGAGGTGCGTAAAA
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