prot_H-elongata_contig57140.13167.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig57140.13167.1
Unique Nameprot_H-elongata_contig57140.13167.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length530
Homology
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BLAST of mRNA_H-elongata_contig57140.13167.1 vs. uniprot
Match: D7G3L4_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L4_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 2.000e-9
Identity = 62/153 (40.52%), Postives = 73/153 (47.71%), Query Frame = 0 
Query:   71 EGGTRGVCTEGSGRKGR-------EEKLRRGAVEVTVAVSAERSEADETLARRHAEVLESYRAARSELASVHMRTRMCG----------WAARRSAMAFWRLATTACAVRDNAGC----ESCTRC--SGDKKYGSGRPGGSQVITGLTIHAPT 200
            EG +  V   GSG +GR       +  LR G     VA +A        L R+HAE  E  R ARSELA VH+RTRMCG          WAARR+A AFWRL TT+      A       SC RC  +G  ++GS           LTI APT
Sbjct: 1243 EGSSNSVGDGGSGGRGRVPGEAGVQAALREGVAGAHVAAAAAAQTKANELKRQHAEAQEESRLARSELACVHLRTRMCGARVLSGVFHKWAARRAARAFWRLRTTSTTGNSPAIAGGVVSSCARCGAAGTGRHGSLDGDDRSTSAALTIEAPT 1395
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BLAST of mRNA_H-elongata_contig57140.13167.1 vs. uniprot
Match: A0A6H5L7S3_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S3_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 9.620e-8
Identity = 57/125 (45.60%), Postives = 66/125 (52.80%), Query Frame = 0 
Query:   96 VEVTVAVSAERSEADETLARRHAEVLESYRAARSELASVHMRTRMCG----------WAARRSAMAFWRLATTACAVRDNAGC----ESCTRCSGDKKYGSGRPG---GSQVITG--LTIHAPTP 201
            V    A +A ++EADE L R+H E  E  R ARSELA VH+RTRMCG          WAARR+A AFWRL TT+     +A       SC RC      G+GR G   G    T   LTI AP P
Sbjct: 1277 VVAAAATTAAQAEADE-LKRQHVEAQEESRLARSELACVHLRTRMCGARVLSGVFHKWAARRAAGAFWRLKTTSTTGNSSAIAGSVVSSCARCGA---AGTGRQGSLDGDDRPTSAVLTIEAPIP 1397
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig57140.13167.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3L4_ECTSI2.000e-940.52PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L7S3_9PHAE9.620e-845.60PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig57140contigH-elongata_contig57140:1038..3338 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig57140.13167.1mRNA_H-elongata_contig57140.13167.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig57140 1037..3338 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig57140.13167.1 ID=prot_H-elongata_contig57140.13167.1|Name=mRNA_H-elongata_contig57140.13167.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=530bp
LTITQGSSDERSSRRKKACASIAAVLVRRQARQAVLAPALLRWRRATAHS
SFPGSSGKESSNASLADIGGEGGTRGVCTEGSGRKGREEKLRRGAVEVTV
AVSAERSEADETLARRHAEVLESYRAARSELASVHMRTRMCGWAARRSAM
AFWRLATTACAVRDNAGCESCTRCSGDKKYGSGRPGGSQVITGLTIHAPT
PGGGGGGGGGPLSWGSPLGESGGHEVELDFDVGWEMRSSLALSNDTDDHH
QHDHERLDCCGPKSAQRRPRLRLMPRPRDERGSQYFFAANASPPPTVVTT
LLSSPESDGTAAANNNGRSGSVRKLLDSMDGGRGQRDDEAGRRTRAAEGR
NRKNSSPSPPLPPVPLPPPFSPGSSCVRGDDNLSANAAGESFGGAYLSVG
DSATCTTAGAADPGSRGKPADACGVEASFVSGASSEPHYQCLRSRSASPD
WEGNGGSGGNDRANTIFHVSEGSKREPGENNVPSSPRDDGGRGGIHHHHQ
KGGGSASGAKDGGALMGREAGTVLYGLGLQ
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