mRNA_H-elongata_contig5709.13163.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5709.13163.1
Unique NamemRNA_H-elongata_contig5709.13163.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5709.13163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5709contigH-elongata_contig5709:4829..5089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930927.2819247-CDS-H-elongata_contig5709:4828..50891622930927.2819247-CDS-H-elongata_contig5709:4828..5089Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5709 4829..5089 +
1691679628.1934536-CDS-H-elongata_contig5709:4828..50891691679628.1934536-CDS-H-elongata_contig5709:4828..5089Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5709 4829..5089 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5709.13163.1prot_H-elongata_contig5709.13163.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5709 4829..5089 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5709.13163.1

>prot_H-elongata_contig5709.13163.1 ID=prot_H-elongata_contig5709.13163.1|Name=mRNA_H-elongata_contig5709.13163.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
PWRKDKALLLDLTIVNPCVSTNLDNAARQTGKHLADAAKQKNNKYRGSFP
ATYSLLPLAMSTCGEVGPEVHAFIKELAIRRTKNSSD
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mRNA from alignment at H-elongata_contig5709:4829..5089+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5709.13163.1 ID=mRNA_H-elongata_contig5709.13163.1|Name=mRNA_H-elongata_contig5709.13163.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig5709:4829..5089+ (Himanthalia elongata Himel1 dioecious)
CCCTGGCGCAAGGACAAAGCACTACTACTTGATCTGACCATTGTCAACCC
TTGTGTTAGCACCAACCTTGATAACGCAGCACGTCAGACCGGAAAACACC
TCGCCGACGCAGCCAAGCAGAAGAATAACAAGTATCGGGGCTCGTTCCCC
GCTACCTACTCTCTCCTTCCTCTCGCTATGTCGACGTGTGGTGAGGTTGG
TCCAGAAGTACATGCCTTCATCAAGGAGCTAGCCATCAGACGGACGAAGA
ACAGCTCAGAT
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Coding sequence (CDS) from alignment at H-elongata_contig5709:4829..5089+

>mRNA_H-elongata_contig5709.13163.1 ID=mRNA_H-elongata_contig5709.13163.1|Name=mRNA_H-elongata_contig5709.13163.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig5709:4829..5089+ (Himanthalia elongata Himel1 dioecious)
CCCTGGCGCAAGGACAAAGCACTACTACTTGATCTGACCATTGTCAACCC
TTGTGTTAGCACCAACCTTGATAACGCAGCACGTCAGACCGGAAAACACC
TCGCCGACGCAGCCAAGCAGAAGAATAACAAGTATCGGGGCTCGTTCCCC
GCTACCTACTCTCTCCTTCCTCTCGCTATGTCGACGTGTGGTGAGGTTGG
TCCAGAAGTACATGCCTTCATCAAGGAGCTAGCCATCAGACGGACGAAGA
ACAGCTCAGATCCCTGGCGCAAGGACAAAGCACTACTACTTGATCTGACC
ATTGTCAACCCTTGTGTTAGCACCAACCTTGATAACGCAGCACGTCAGAC
CGGAAAACACCTCGCCGACGCAGCCAAGCAGAAGAATAACAAGTATCGGG
GCTCGTTCCCCGCTACCTACTCTCTCCTTCCTCTCGCTATGTCGACGTGT
GGTGAGGTTGGTCCAGAAGTACATGCCTTCATCAAGGAGCTAGCCATCAG
ACGGACGAAGAACAGCTCAGAT
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