mRNA_H-elongata_contig5704.13155.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5704.13155.1
Unique NamemRNA_H-elongata_contig5704.13155.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig5704.13155.1 vs. uniprot
Match: A0A6H5L492_9PHAE (GT20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L492_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 3.310e-54
Identity = 90/155 (58.06%), Postives = 113/155 (72.90%), Query Frame = 1 
Query:    1 VTSFYLPVTLTKKIKECGSSQ---------------------WVADWDYEQLVALQSKLRVLRIGTVRSEDGTRIEEQDKPAVTAALWELNCVPVFLSESVSHRCYYKYCKGVLWPVMHGVLEVYDELANSLLDDKAIIQGWQAYKNVNRAFRDK 402
            V SFYLPVTLT++     S +                     WVA+WD+EQL+A+Q+ LRV+R+GTV+ ++   IEE+DK AV  AL +LNCVPVFL++S++H+CYY YCKGVLWPVMHG+LE+YD+L NSLLDD AI QGWQAYK VNRAFRDK
Sbjct:  276 VASFYLPVTLTRRTASDTSGETAGVAEANADGVGGGGADCDGWVAEWDHEQLIAMQTNLRVVRVGTVKCDEN--IEEEDKAAVVKALLKLNCVPVFLTKSITHQCYYSYCKGVLWPVMHGMLEMYDDLPNSLLDDAAITQGWQAYKQVNRAFRDK 428
[Close]
BLAST of mRNA_H-elongata_contig5704.13155.1 vs. uniprot
Match: D7G011_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G011_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 7.390e-41
Identity = 80/157 (50.96%), Postives = 96/157 (61.15%), Query Frame = 1 
Query:    1 VTSFYLPVTLTKKIK-----------------------ECGSSQWVADWDYEQLVALQSKLRVLRIGTVRSEDGTRIEEQDKPAVTAALWELNCVPVFLSESVSHRCYYKYCKGVLWPVMHGVLEVYDELANSLLDDKAIIQGWQAYKNVNRAFRDK 402
            V SFYLPVTLT++                         +CG   WVA+WD+EQL+A+Q                        PAV  AL +LNCVPVFL++S++H+CYY YCKGVLWPVMHG+LE+YD+L NSLLDD AI QGWQAYK VNRAFRDK
Sbjct:   86 VASFYLPVTLTRRTASDTSGETAGVPEDKADGDGGGGADCGG--WVAEWDHEQLIAMQ------------------------PAVVKALLKLNCVPVFLTKSITHQCYYSYCKGVLWPVMHGMLEMYDDLPNSLLDDAAITQGWQAYKQVNRAFRDK 216
[Close]
BLAST of mRNA_H-elongata_contig5704.13155.1 vs. uniprot
Match: V5K3Y9_SACJA (Trehalose-6-phosohate synthase n=1 Tax=Saccharina japonica TaxID=88149 RepID=V5K3Y9_SACJA)

HSP 1 Score: 120 bits (300), Expect = 7.220e-29
Identity = 62/137 (45.26%), Postives = 82/137 (59.85%), Query Frame = 1 
Query:    1 VTSFYLPVTLTKKIKECGSSQWVADWDYEQLVALQSK---LRVLRIGTVRSEDGTRIEEQDKPAVTAALWELNCVPVFLSESVSHRCYYKYCKGVLWPVMHGVLEVYDELANSLLDDKAIIQGWQAYKNVNRAFRDK 402
            V SF+LPV + K I       WV +WDYE L++L S    +RV R+G +R  DG + EE++  AV  AL   +CVPVFL  S++ + Y  +CKGVLWPV H V++VY +          +   WQAY NVNR FRDK
Sbjct:  177 VVSFFLPVIIDKDI----DGNWVVEWDYESLLSLHSASIDMRVTRVGFLRYADGVKPEEEE--AVAKALLPFSCVPVFLERSLAQKFYRDFCKGVLWPVFHHVVDVYGDQVMRFFAQDVLADLWQAYANVNRRFRDK 307
[Close]
BLAST of mRNA_H-elongata_contig5704.13155.1 vs. uniprot
Match: A0A7S3XSU4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSU4_HETAK)

HSP 1 Score: 94.7 bits (234), Expect = 3.300e-20
Identity = 49/135 (36.30%), Postives = 76/135 (56.30%), Query Frame = 1 
Query:    1 VTSFYLPVTLTKKIKECGSSQWVADWDYEQLVALQSKLRVLRIGTVRSEDGTR-IEEQDKPAVTAALWELNCVPVFLSESVSHRCYYKYCKGVLWPVMHGVLEVYDELANSLLDDKAIIQGWQAYKNVNRAFRDK 402
            V S +LPV + +     G   W   WD++ +++L+S +RV R+GT     G   + + +K  +  AL   +CVPV+L   ++ + Y  +CKGVLWPV H +L+VY + A    D + +   W AY  VNR FRD+
Sbjct:   23 VASCFLPVEIERGP---GGRGWAVRWDHDNVLSLRSDVRVARVGTPPLPAGCGDLSDAEKEELELALQPFDCVPVWLEADLAEKFYSGFCKGVLWPVFHNMLDVYGDAAVDFWDAQHLDGLWFAYTQVNRKFRDR 154
[Close]
BLAST of mRNA_H-elongata_contig5704.13155.1 vs. uniprot
Match: A0A7S2BW05_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BW05_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 5.830e-18
Identity = 55/140 (39.29%), Postives = 78/140 (55.71%), Query Frame = 1 
Query:    1 VTSFYLPVTLTKKIKECGSSQWVADWDYEQLVALQSK-LRVLRIGTVRSEDGT-RIE----EQDKPAVTAALWE-LNCVPVFLSESVSHRCYYKYCKGVLWPVMHGVLEVYD-ELANSLLDDKAIIQGWQAYKNVNRAFR 396
            V S+YLPV +     +  +     +WD E L++  +  LRV RIG+VR   G  +++    +Q +  +T  L E  +CVP+FL E  SH CY  +CKGVLWPV H +LEV   E A     +K+  +GW AY  V R F+
Sbjct:  173 VVSYYLPVLVDY---DASTGVLNVEWDNEALLSYNAHGLRVTRIGSVRFNGGVPKVDKVKMDQIQEELTQTLEEKFHCVPIFLDEKTSHTCYQVFCKGVLWPVFHNLLEVMSTENAAVQFSNKSGDEGWLAYTTVQRVFK 309
[Close]
BLAST of mRNA_H-elongata_contig5704.13155.1 vs. uniprot
Match: A0A7S2UVC1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVC1_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.120e-15
Identity = 35/82 (42.68%), Postives = 53/82 (64.63%), Query Frame = 1 
Query:  157 RIEEQDKPAVTAALWELNCVPVFLSESVSHRCYYKYCKGVLWPVMHGVLEVYDELANSLLDDKAIIQGWQAYKNVNRAFRDK 402
            ++ E DK  +  AL   +CVPV+L E+++ + Y ++CKGVLWP+ H V+++Y +L+    D   +   WQAY  VNR FRDK
Sbjct:    7 QLTEDDKLQLEQALAVFDCVPVWLDEALATKFYQEFCKGVLWPIFHNVVDIYGDLSTHFWDSDTLGTAWQAYMMVNRQFRDK 88
[Close]
BLAST of mRNA_H-elongata_contig5704.13155.1 vs. uniprot
Match: A0A8J2SYI9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SYI9_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.710e-12
Identity = 38/113 (33.63%), Postives = 57/113 (50.44%), Query Frame = 1 
Query:    1 VTSFYLPVTLTKKIKECGSSQWVADWDYEQLVALQSKLRVLRIGTVRSEDGTRIEEQDKPAVTAALWELNCVPVFLSESVSHRCYYKYCKGVLWPVMHGVLEVYDELANSLLD 339
            V S +LPV + +      S +    WD+E L++LQ+ LRV R+G  R+ D     E+   A          + +FL        Y+ +CKG+LWPV H  +EVY E +  LL+
Sbjct:  558 VASLFLPVLIARD----SSGKLQIAWDHENLLSLQTPLRVTRVGIARTPDDATEREKQDVANRLRRQPWCAIAIFLDAETFRLFYHSFCKGILWPVFHNSVEVYGEQSTPLLE 666
[Close]
BLAST of mRNA_H-elongata_contig5704.13155.1 vs. uniprot
Match: M2Y6Q1_GALSU (Alpha,alpha-trehalose-phosphate synthase (UDP-forming) isoform 1 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y6Q1_GALSU)

HSP 1 Score: 70.5 bits (171), Expect = 1.680e-11
Identity = 45/142 (31.69%), Postives = 71/142 (50.00%), Query Frame = 1 
Query:    1 VTSFYLPVTLTKKIKECGSSQWVADWDYEQLV--------ALQSKLRVLRIGTVRSEDGTRIEEQDKPAVTAALWE-LNCVPVFLSESVSHRCYYKYCKGVLWPVMHGVLEVYDELANSLLDDKAIIQGWQAYKNVNRAFRD 399
            +  + LPV     I +  S+ W   WD + L          LQ K+R   IG +  ED   I E ++  VT  L +  +C+PVF+ ++   + Y  +CKGVLWP+ H +++V D+   +   D+++   W  Y  VNR F D
Sbjct:  184 IVLYRLPV-----IAKRTSNGWSFKWDDDALYLTSVGLRDGLQGKIRFYWIGILNCEDD--IPEDEEEGVTQTLMDRFSCIPVFVPKATLTKFYQGFCKGVLWPLFHMIIQVTDDGGRTKQFDRSL---WHVYCLVNRKFAD 315
[Close]
BLAST of mRNA_H-elongata_contig5704.13155.1 vs. uniprot
Match: A0A1Z5K0A5_FISSO (Trehalose 6-phosphate synthase/phosphatase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K0A5_FISSO)

HSP 1 Score: 69.7 bits (169), Expect = 3.160e-11
Identity = 48/146 (32.88%), Postives = 68/146 (46.58%), Query Frame = 1 
Query:   10 FYLPVTLTKKIKECGSSQWVADWDYEQLVALQSKLRVLR------IGTVRSEDGTRIEEQDKPAVTAALWELNCVPVFLSESVSHRCYYKYCKGVLWPVMHGV----LEVYDELANSLLDDKAIIQG-----WQAYKNVNRAFRDK 402
            F+LPV +   +K   S +W A W  E ++A     ++L       +GTV +       E DK AV   L  ++C+P+FL ESV    YY +CK VLWP  H +    L +   L    +      QG     W+AY  VN  F D+
Sbjct:  296 FHLPVMV---VKNESSGEWNASWS-ESILAKTEGSQILSHFETYWVGTVTTHPPLE-SEADKEAVRKILEGMDCIPIFLDESVRDAHYYGFCKQVLWPAFHNIDLLDLSICGWLPGKKIGASDWDQGRLDYWWKAYLQVNSTFSDR 436
[Close]
BLAST of mRNA_H-elongata_contig5704.13155.1 vs. uniprot
Match: A0A8K1CLG9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CLG9_PYTOL)

HSP 1 Score: 65.9 bits (159), Expect = 7.180e-10
Identity = 39/116 (33.62%), Postives = 57/116 (49.14%), Query Frame = 1 
Query:   16 LPVTLTKKIKECGSSQWVADWD-------YEQLVALQSKLRVLRIGTVRSEDGTRIEEQDKPAVTAALWELNCVPVFLSESVSHRCYYKYCKGVLWPVMHGVLEVYDELANSLLDD 342
            LP+   +K  + G   W  +W        Y  LV+   +   + IG         +  +++ AV   L   NCVPVFL   V+HR +  +CKGVLWPV H +++VY+  A   LDD
Sbjct:   57 LPLVFERKADDSG---WKIEWSSSATSLFYRNLVSNTERYLPMFIGCPE----VFVSREEETAVEKQLSAFNCVPVFLDPVVAHRYFQGFCKGVLWPVFHNIVDVYNS-AKLALDD 164
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5704.13155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L492_9PHAE3.310e-5458.06GT20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G011_ECTSI7.390e-4150.96Trehalose 6-phosphate synthase, family GT20 / Treh... [more]
V5K3Y9_SACJA7.220e-2945.26Trehalose-6-phosohate synthase n=1 Tax=Saccharina ... [more]
A0A7S3XSU4_HETAK3.300e-2036.30Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2BW05_9STRA5.830e-1839.29Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2UVC1_9STRA1.120e-1542.68Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8J2SYI9_9STRA2.710e-1233.63Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
M2Y6Q1_GALSU1.680e-1131.69Alpha,alpha-trehalose-phosphate synthase (UDP-form... [more]
A0A1Z5K0A5_FISSO3.160e-1132.88Trehalose 6-phosphate synthase/phosphatase n=2 Tax... [more]
A0A8K1CLG9_PYTOL7.180e-1033.62Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5704contigH-elongata_contig5704:2006..4643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score155.6
Seed ortholog evalue1.6e-35
Seed eggNOG ortholog2880.D7G011
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K16055
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,map00500,map01100
EggNOG free text desc.trehalose biosynthetic process
EggNOG OGsCOG1877@1,KOG1050@2759
EC2.4.1.15,3.1.3.12
COG Functional cat.G
CAZyGT20
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Exons4
Model size404
Cds size402
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5704.13155.1prot_H-elongata_contig5704.13155.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5704 2008..4643 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930926.3968413-CDS-H-elongata_contig5704:2007..21241622930926.3968413-CDS-H-elongata_contig5704:2007..2124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5704 2008..2124 -
1691679627.8463433-CDS-H-elongata_contig5704:2007..21241691679627.8463433-CDS-H-elongata_contig5704:2007..2124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5704 2008..2124 -
1622930926.4167616-CDS-H-elongata_contig5704:2784..28921622930926.4167616-CDS-H-elongata_contig5704:2784..2892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5704 2785..2892 -
1691679627.8610303-CDS-H-elongata_contig5704:2784..28921691679627.8610303-CDS-H-elongata_contig5704:2784..2892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5704 2785..2892 -
1622930926.4455788-CDS-H-elongata_contig5704:3824..38961622930926.4455788-CDS-H-elongata_contig5704:3824..3896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5704 3825..3896 -
1691679627.8696215-CDS-H-elongata_contig5704:3824..38961691679627.8696215-CDS-H-elongata_contig5704:3824..3896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5704 3825..3896 -
1622930926.4694607-CDS-H-elongata_contig5704:4538..46431622930926.4694607-CDS-H-elongata_contig5704:4538..4643Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5704 4539..4643 -
1691679627.8830254-CDS-H-elongata_contig5704:4538..46431691679627.8830254-CDS-H-elongata_contig5704:4538..4643Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5704 4539..4643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5704.13155.1

>prot_H-elongata_contig5704.13155.1 ID=prot_H-elongata_contig5704.13155.1|Name=mRNA_H-elongata_contig5704.13155.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
VTSFYLPVTLTKKIKECGSSQWVADWDYEQLVALQSKLRVLRIGTVRSED
GTRIEEQDKPAVTAALWELNCVPVFLSESVSHRCYYKYCKGVLWPVMHGV
LEVYDELANSLLDDKAIIQGWQAYKNVNRAFRDK
back to top

mRNA from alignment at H-elongata_contig5704:2006..4643-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5704.13155.1 ID=mRNA_H-elongata_contig5704.13155.1|Name=mRNA_H-elongata_contig5704.13155.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2638bp|location=Sequence derived from alignment at H-elongata_contig5704:2006..4643- (Himanthalia elongata Himel1 dioecious)
GTAACCTCATTTTACCTGCCGGTGACGCTCACCAAGAAAATCAAGGAGTG
CGGCTCGAGTCAGTGGGTTGCTGACTGGGACTACGAACAGCTGGTTGCCT
TACAGGTGAGATATGAGGGCGACGGGGCAGGAGATGCGATGGCCCACTCC
CGTCAGGCAGCCGGACAACCTGACAGGTTTTATGTTAAGACGCCACACAC
AAGCTGTAGTTTATTCACATGGGTCACTGGATCACTGAAGTCGACTCGAC
TCGACTCGAGCACTAGCATAATACATATGTGATGACCATAATACATATTT
CATATATGGCAGTACCAAATACATACATGGCGGTACCATAATATTTCAGT
TGAGTCCTGAAGATCCGTACCTGTGCTATCTCCAAGTTCGAACTCACCCT
TTAGTCTATTGAAGGATGTATTTATTTATTTGAAGGCAATAATTCTATTA
TTAGTAGTTCTAGTAGGTTTTTTTTGAATTCGAGTATTTGCTGGACTCGT
AAACCAATCCACTGTGTACTATGAAAAGTCCACTATTCAACAGCCACAAT
CGGTAAAACGACTTTACTTTCTATCGACCGAGTTTGTGCTGGACTGCGTT
TTGATGTTGGGTTGTAATATTAATATTAATTACCCGAAATGCTGAAAGCG
AAAACAAACATGTTTGCATATTTTAATCGTGATCGCCCTTAACGTGATCG
TGATTTATGGACTATGACTATGAATGATGGGTGTGGACATGGAAAAGAGC
AAACTTCGCGTGCTGAGGATCGGTACCGTCCGGAGCGAGGATGGCACTCG
TATCGAAGAACAGGACAAGGTAAATATATAGGGGGAGTGATAGCTGTGAC
TACGTAGTCACGATTTAGTTTGTGACTACAGGAAAAAACTGCAAAAAACG
TTAAAAAAACGTTAATTTCATGCAGAGTAAAATAGTCGTTTCTTAAAAAC
CTATATATACTGGCTGACCCAACCTGCCCCCCTAACCTTAACCCATACAC
TCACACCCTTGGGCTCTGAGAACCTTAAATTTATGGTAGAAACCCCGGGG
ATGAACCCTTATATGTCCCCGTAGCCACAAACTAAATTGTGACTATGTAG
TCACAATAATCAATTTCCAATATATAATACTTCAACAAGCCTTGGGAGGC
GTTAGGCAGGAGTGGGGAGTGATTCGCTTTGAGATCTTGCTATACTATAT
ATAGTACTATATTATGGTCACGTTGTCTTTATAATGAGAGGTACAGTAAC
TGGAACTGATGTCCTTTTATCATTCATTCTTTTTCATGTTGCGCTGTTGT
GCATTTTTGCTGTATTTGAAATAATAATAGAAAACAGCTAGAAAATCGTG
TTTTTACTGTACAAGGTTATCATTATATATAAATAGTATATATCTGCCCT
GTTCCACAGAGTTGCTTTTATTATGCTGTTCTGACCTTGTGATAATCCGT
CTGGTAGTGGTAGGTCACGAATATACTGTTATTAATGTACGATGTTTTAT
AGTATAGTATTGCTCTGTTAAGGTTGTGCCCTGTTTGTACTGGTCTGTTG
TTATTATGCCATTAAGTTGCTACTTTTTGATTGATTCAAAACTAAGATCA
TATGAATATTCAAAACTAAGATAATATAAATATTCACAACTAAGATCATA
TGAATATTCACAACTAAGATCATATGAATATCCCCTTTATTATATGCTAA
TATAATATTGATGTGCGCCTTATTATGCATTTTTTTTCTTCTATCGAGAA
GCCGGCCGTGACCGCGGCCCTCTGGGAGCTGAATTGCGTTCCAGTCTTTC
TCAGCGAGTCGGTGTCCCACCGATGCTACTACAAGTACTGCAAGGGGGTC
CTATGGCCGGTAAGTGCCGCGTGCTTACTATTAATAATACGAATAGGACC
TCATTATATACTATATATTATATACTATATAGACGATTTTCAAGATTACA
GCATATCCTAATCGGAAAATCATGCTATAACTTGAAAATATAACAGTTTT
TTTAGAAAAATCCAGAGGCAGAGCTTACTCCAGAATTGTATTGGCCTTTA
GACCATTGGACCATTAGACTATCGTACGTGCCTCGGGAGGGGGGGGCGTC
TTTTAGGGTAGATATAAACAATATACATTTTACGTGTGTCGCGATAGAGT
GTGTGCTCACGATGCGCTTTTTAATCTTGATTTTGAGAAAAATCAGGAAT
CTCGCTGCTTCCATCGATATCATTTCGACACCCGCTTATTATTAGTCCCC
CTTTGTTTGTCGACCTTGTCGATTGCTTCTTCTATTGTAAGAGTAGTAAT
AACGGAGACTATTTCTCTACTGATTAGAGTATTTACGATAGCGTTAACGG
CATTTTACGGAGTGCCGTTGCCTTCAAGTTGTAGTGACGGAATGTCTTTG
ATTGCTATTATCGACCTTTTTTCTAAGAAAAAATAGAGAGAGAGGAACCT
CTCAAGTGTTCTGCTAAAGCTCATGACTGCTTGTTTAACGGGGGGCTGGT
TGTTGGGGTGGGGGCACAGGTGATGCACGGTGTTCTGGAGGTGTACGATG
AGCTGGCGAACTCCCTACTGGACGACAAGGCTATCATCCAAGGGTGGCAG
GCGTACAAGAACGTTAATCGTGCCTTTAGGGACAAGGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig5704:2006..4643-

>mRNA_H-elongata_contig5704.13155.1 ID=mRNA_H-elongata_contig5704.13155.1|Name=mRNA_H-elongata_contig5704.13155.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig5704:2006..4643- (Himanthalia elongata Himel1 dioecious)
GTAACCTCATTTTACCTGCCGGTGACGCTCACCAAGAAAATCAAGGAGTG
CGGCTCGAGTCAGTGGGTTGCTGACTGGGACTACGAACAGCTGGTTGCCT
TACAGGTAACCTCATTTTACCTGCCGGTGACGCTCACCAAGAAAATCAAG
GAGTGCGGCTCGAGTCAGTGGGTTGCTGACTGGGACTACGAACAGCTGGT
TGCCTTACAGAGCAAACTTCGCGTGCTGAGGATCGGTACCGTCCGGAGCG
AGGATGGCACTCGTATCGAAGAACAGGACAAGAGCAAACTTCGCGTGCTG
AGGATCGGTACCGTCCGGAGCGAGGATGGCACTCGTATCGAAGAACAGGA
CAAGCCGGCCGTGACCGCGGCCCTCTGGGAGCTGAATTGCGTTCCAGTCT
TTCTCAGCGAGTCGGTGTCCCACCGATGCTACTACAAGTACTGCAAGGGG
GTCCTATGGCCGCCGGCCGTGACCGCGGCCCTCTGGGAGCTGAATTGCGT
TCCAGTCTTTCTCAGCGAGTCGGTGTCCCACCGATGCTACTACAAGTACT
GCAAGGGGGTCCTATGGCCGGTGATGCACGGTGTTCTGGAGGTGTACGAT
GAGCTGGCGAACTCCCTACTGGACGACAAGGCTATCATCCAAGGGTGGCA
GGCGTACAAGAACGTTAATCGTGCCTTTAGGGACAAGGTGATGCACGGTG
TTCTGGAGGTGTACGATGAGCTGGCGAACTCCCTACTGGACGACAAGGCT
ATCATCCAAGGGTGGCAGGCGTACAAGAACGTTAATCGTGCCTTTAGGGA
CAAG
back to top