prot_H-elongata_contig56968.13152.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig56968.13152.1
Unique Nameprot_H-elongata_contig56968.13152.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length45
Homology
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BLAST of mRNA_H-elongata_contig56968.13152.1 vs. uniprot
Match: D7G930_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G930_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 7.650e-11
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 0 
Query:    3 PVTAASLSRLLQMGHVDGMTMVWTTGMVEWKPLGEV 38
            PV+AA+LSRLL+ G VDGMTM WTTGM +WKPLGEV
Sbjct:  141 PVSAAALSRLLRQGEVDGMTMAWTTGMGDWKPLGEV 176
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BLAST of mRNA_H-elongata_contig56968.13152.1 vs. uniprot
Match: A0A2P4Y8Q2_9STRA (Splicing factor U2AF-associated protein 2 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y8Q2_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 5.370e-5
Identity = 20/36 (55.56%), Postives = 25/36 (69.44%), Query Frame = 0 
Query:    3 PVTAASLSRLLQMGHVDGMTMVWTTGMVEWKPLGEV 38
            PVT   L +L   G VDGMT+VWT  + +WKP+GEV
Sbjct:   17 PVTTQQLVKLFVDGEVDGMTLVWTQELDDWKPIGEV 52
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BLAST of mRNA_H-elongata_contig56968.13152.1 vs. uniprot
Match: A0A662XQN9_9STRA (RRM domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQN9_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 5.370e-5
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 0 
Query:    1 SRPVTAASLSRLLQMGHVDGMTMVWTTGMVEWKPLGEV 38
            S PV+  +L +L   G VDGMT+VW+  M EWKP+GEV
Sbjct:  107 SGPVSTQNLVKLFVDGAVDGMTLVWSQDMDEWKPIGEV 144
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56968.13152.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G930_ECTSI7.650e-1177.78RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A2P4Y8Q2_9STRA5.370e-555.56Splicing factor U2AF-associated protein 2 n=1 Tax=... [more]
A0A662XQN9_9STRA5.370e-555.26RRM domain-containing protein n=2 Tax=Nothophytoph... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025640GYF domain 2PFAMPF14237GYF_2coord: 3..39
e-value: 6.6E-10
score: 38.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56968contigH-elongata_contig56968:535..669 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56968.13152.1mRNA_H-elongata_contig56968.13152.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig56968 535..669 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig56968.13152.1 ID=prot_H-elongata_contig56968.13152.1|Name=mRNA_H-elongata_contig56968.13152.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
SRPVTAASLSRLLQMGHVDGMTMVWTTGMVEWKPLGEVRRVFGKR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025640GYF_2