mRNA_H-elongata_contig10155.132.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10155.132.1
Unique NamemRNA_H-elongata_contig10155.132.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10155.132.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 1.330e-19
Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 FEVGDYVLVARVKKPGRVRKLVQTWIGPWRVVPGGSEHVHVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVRE 222
            F VGDYV+VARV++ G   KL  TW GPWRVV    +HV+ V++IV G+ ++VHV R+R YADS L V +++++
Sbjct:   15 FTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKD 88          
BLAST of mRNA_H-elongata_contig10155.132.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.860e-18
Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 FEVGDYVLVARVKKPGRVRKLVQTWIGPWRVVPGGSEHVHVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVRE 222
            F VGDYV+VARV++ G   KL  TW GPWRVV    +HV+ V++IV G+ ++VHV R+R YADS L V +++++
Sbjct:  270 FTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKD 343          
BLAST of mRNA_H-elongata_contig10155.132.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 5.110e-18
Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 FEVGDYVLVARVKKPGRVRKLVQTWIGPWRVVPGGSEHVHVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVRE 222
            F VGDYV+VARV++ G   KL  TW GPWRVV    +HV+ V++IV G+ ++VHV R+R YADS L V +++++
Sbjct: 1493 FTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKD 1566          
BLAST of mRNA_H-elongata_contig10155.132.1 vs. uniprot
Match: A0A225W8R8_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W8R8_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 6.840e-10
Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    1 FEVGDYVLVARVKKPGRVRKLVQTWIGPWRVVPGGSEHVHVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVRE 222
            F+VGDYVL +R+ +     KL++ W+GP+R++     H   ++ +VT +  EVH  R++ YAD+ L + AE+RE
Sbjct: 1024 FDVGDYVLWSRIDERLPNNKLLEQWLGPFRIIEA-QPHAFNIQHLVTNKVYEVHGTRLKYYADADLNMDAEMRE 1096          
BLAST of mRNA_H-elongata_contig10155.132.1 vs. uniprot
Match: A0A6H5LBX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBX7_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.400e-8
Identity = 25/47 (53.19%), Postives = 33/47 (70.21%), Query Frame = 1
Query:   70 TWIGPWRVVPGGSEHVHVVEDIVTGETQEVHVVRMRPYADSSLVVGA 210
            TW GPWR+V     HV  V++IV GE ++VHV R+R YAD+SL + A
Sbjct:    2 TWTGPWRIVAAVRPHVCGVQNIVWGEDRDVHVARLRFYADASLEITA 48          
BLAST of mRNA_H-elongata_contig10155.132.1 vs. uniprot
Match: W2KEB9_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2KEB9_PHYPR)

HSP 1 Score: 57.0 bits (136), Expect = 1.010e-7
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    1 FEVGDYVLVARV-KKPGRVRKLVQTWIGPWRVVPGGSEHVHVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVRE 222
            F  GDYVL + V +K G   KL+ TW+GP+R++   + H  ++E ++TG   +VHV R++ YAD+SL V  E+ E
Sbjct:  591 FTEGDYVLRSIVDEKSGN--KLLVTWVGPYRILRADA-HSFLIEHLITGAKLDVHVSRLKFYADASLNVTEELLE 662          
BLAST of mRNA_H-elongata_contig10155.132.1 vs. uniprot
Match: V9EDH7_PHYPR (Uncharacterized protein n=1 Tax=Phytophthora parasitica P1569 TaxID=1317065 RepID=V9EDH7_PHYPR)

HSP 1 Score: 57.0 bits (136), Expect = 1.020e-7
Identity = 32/75 (42.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:    1 FEVGDYVLVARV-KKPGRVRKLVQTWIGPWRVVPGGSEHVHVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVRE 222
            F  GDYVL + V +K G   KL+ TW+GP+R++   + H  ++E ++TG   +VHV R++ YAD+SL V  E+ E
Sbjct:  819 FTEGDYVLRSIVDEKSGN--KLLVTWVGPYRILRADA-HSFLIEHLITGAKLDVHVSRLKFYADASLNVTEELLE 890          
BLAST of mRNA_H-elongata_contig10155.132.1 vs. uniprot
Match: A0A6G0MN46_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MN46_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.020e-7
Identity = 27/74 (36.49%), Postives = 46/74 (62.16%), Query Frame = 1
Query:    1 FEVGDYVLVARVKKPGRVRKLVQTWIGPWRVVPGGSEHVHVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVRE 222
            FEVGD+VL +R+ +     KL+  W+GP++V+     H  V++ +++G   +VHV R++ YAD+ L    E+ E
Sbjct: 1267 FEVGDFVLWSRIDQRLSNNKLLGQWVGPFKVIEA-KPHSFVIQHLISGREYDVHVSRLKFYADAELNQTEELLE 1339          
BLAST of mRNA_H-elongata_contig10155.132.1 vs. uniprot
Match: A0A225UQG0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UQG0_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.350e-7
Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    1 FEVGDYVLVARVKKPGRVRKLVQTWIGPWRVVPGGSEHVHVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVRE 222
            F VGDYVL +RV +     KL+ TW+GP+++      H   V  +VTG   +VH+ R++ YAD SL +  E+R+
Sbjct:  425 FSVGDYVLRSRVDQKHH-DKLLVTWVGPYQITRA-DPHSFQVRHLVTGALTDVHLSRLKFYADISLSITEELRD 496          
BLAST of mRNA_H-elongata_contig10155.132.1 vs. uniprot
Match: A0A6A3DQC9_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3DQC9_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.370e-7
Identity = 27/74 (36.49%), Postives = 46/74 (62.16%), Query Frame = 1
Query:    1 FEVGDYVLVARVKKPGRVRKLVQTWIGPWRVVPGGSEHVHVVEDIVTGETQEVHVVRMRPYADSSLVVGAEVRE 222
            FEVGD+VL +R+ +     KL+  W+GP++V+     H  V++ +++G   +VHV R++ YAD+ L    E+ E
Sbjct:  520 FEVGDFVLWSRIDQRLPNNKLLGQWVGPFKVIEA-KPHSFVIQHLISGREYDVHVSRLKFYADAELNQTEELLE 592          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10155.132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5KAI3_9PHAE1.330e-1951.35Chromo domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JVS6_9PHAE3.860e-1851.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE5.110e-1851.35Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A225W8R8_9STRA6.840e-1039.19Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LBX7_9PHAE1.400e-853.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W2KEB9_PHYPR1.010e-742.67Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
V9EDH7_PHYPR1.020e-742.67Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
A0A6G0MN46_9STRA1.020e-736.49RNA-directed DNA polymerase n=1 Tax=Phytophthora f... [more]
A0A225UQG0_9STRA1.350e-740.54Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A6A3DQC9_9STRA1.370e-736.49Uncharacterized protein n=4 Tax=Phytophthora fraga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10155contigH-elongata_contig10155:4815..5036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue6e-08
Seed eggNOG ortholog67593.Physo136309
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QDQ4@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929554.5390956-CDS-H-elongata_contig10155:4814..50361622929554.5390956-CDS-H-elongata_contig10155:4814..5036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10155 4815..5036 +
1691679067.7810922-CDS-H-elongata_contig10155:4814..50361691679067.7810922-CDS-H-elongata_contig10155:4814..5036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10155 4815..5036 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10155.132.1prot_H-elongata_contig10155.132.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10155 4815..5036 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10155.132.1

>prot_H-elongata_contig10155.132.1 ID=prot_H-elongata_contig10155.132.1|Name=mRNA_H-elongata_contig10155.132.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
FEVGDYVLVARVKKPGRVRKLVQTWIGPWRVVPGGSEHVHVVEDIVTGET
QEVHVVRMRPYADSSLVVGAEVRE
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mRNA from alignment at H-elongata_contig10155:4815..5036+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10155.132.1 ID=mRNA_H-elongata_contig10155.132.1|Name=mRNA_H-elongata_contig10155.132.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig10155:4815..5036+ (Himanthalia elongata Himel1 dioecious)
TTTGAGGTTGGCGATTATGTCTTAGTGGCTCGGGTGAAGAAACCGGGACG TGTGCGTAAGCTCGTACAGACGTGGATTGGACCGTGGCGTGTTGTGCCTG GAGGATCAGAGCATGTTCATGTAGTGGAGGATATTGTCACGGGGGAAACA CAGGAAGTGCACGTGGTGCGGATGCGTCCGTATGCTGATTCGTCTCTGGT TGTGGGCGCAGAGGTCCGCGAA
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Coding sequence (CDS) from alignment at H-elongata_contig10155:4815..5036+

>mRNA_H-elongata_contig10155.132.1 ID=mRNA_H-elongata_contig10155.132.1|Name=mRNA_H-elongata_contig10155.132.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig10155:4815..5036+ (Himanthalia elongata Himel1 dioecious)
TTTGAGGTTGGCGATTATGTCTTAGTGGCTCGGGTGAAGAAACCGGGACG
TGTGCGTAAGCTCGTACAGACGTGGATTGGACCGTGGCGTGTTGTGCCTG
GAGGATCAGAGCATGTTCATGTAGTGGAGGATATTGTCACGGGGGAAACA
CAGGAAGTGCACGTGGTGCGGATGCGTCCGTATGCTGATTCGTCTCTGGT
TGTGGGCGCAGAGGTCCGCGAATTTGAGGTTGGCGATTATGTCTTAGTGG
CTCGGGTGAAGAAACCGGGACGTGTGCGTAAGCTCGTACAGACGTGGATT
GGACCGTGGCGTGTTGTGCCTGGAGGATCAGAGCATGTTCATGTAGTGGA
GGATATTGTCACGGGGGAAACACAGGAAGTGCACGTGGTGCGGATGCGTC
CGTATGCTGATTCGTCTCTGGTTGTGGGCGCAGAGGTCCGCGAA
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