mRNA_H-elongata_contig56835.13134.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56835.13134.1
Unique NamemRNA_H-elongata_contig56835.13134.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56835.13134.1 vs. uniprot
Match: A0A6H5JH51_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH51_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 3.270e-13
Identity = 45/94 (47.87%), Postives = 62/94 (65.96%), Query Frame = 1 
Query:    4 DLRLLDDAISLLTPSEAQVRVVEVDTFTESERSIARGNIPLDDKNSNYALRQKTIILKRAAPSD-------ASPEQPVASEKTKIMTEKIPPSA 264
            DL+LLD+AISLL P EA VRVVEVDTFTESERSI +G+  +   + +++LRQ T I KRA+PS        A+ +    +E++ +  E + P A
Sbjct:   41 DLKLLDEAISLLNPPEAHVRVVEVDTFTESERSIVKGSARIG--HGDFSLRQMTAIFKRASPSGLGIAELTATNDDESKAEESDVAPEDLTPEA 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56835.13134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JH51_9PHAE3.270e-1347.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56835contigH-elongata_contig56835:922..2086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size536
Cds size396
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56835.13134.1prot_H-elongata_contig56835.13134.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56835 1061..2086 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930923.5487845-UTR-H-elongata_contig56835:921..10601622930923.5487845-UTR-H-elongata_contig56835:921..1060Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56835 922..1060 -
1691679626.5168877-UTR-H-elongata_contig56835:921..10601691679626.5168877-UTR-H-elongata_contig56835:921..1060Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56835 922..1060 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930923.5653121-CDS-H-elongata_contig56835:1060..11221622930923.5653121-CDS-H-elongata_contig56835:1060..1122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56835 1061..1122 -
1691679626.527378-CDS-H-elongata_contig56835:1060..11221691679626.527378-CDS-H-elongata_contig56835:1060..1122Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56835 1061..1122 -
1622930923.577905-CDS-H-elongata_contig56835:1166..14131622930923.577905-CDS-H-elongata_contig56835:1166..1413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56835 1167..1413 -
1691679626.5385344-CDS-H-elongata_contig56835:1166..14131691679626.5385344-CDS-H-elongata_contig56835:1166..1413Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56835 1167..1413 -
1622930923.5892882-CDS-H-elongata_contig56835:1999..20861622930923.5892882-CDS-H-elongata_contig56835:1999..2086Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56835 2000..2086 -
1691679626.5481098-CDS-H-elongata_contig56835:1999..20861691679626.5481098-CDS-H-elongata_contig56835:1999..2086Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56835 2000..2086 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56835.13134.1

>prot_H-elongata_contig56835.13134.1 ID=prot_H-elongata_contig56835.13134.1|Name=mRNA_H-elongata_contig56835.13134.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
DDLRLLDDAISLLTPSEAQVRVVEVDTFTESERSIARGNIPLDDKNSNYA
LRQKTIILKRAAPSDASPEQPVASEKTKIMTEKIPPSATTGNPAAFGADP
KIGEPTKDAAADSAAGVDRERSGGGVRERMS*
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mRNA from alignment at H-elongata_contig56835:922..2086-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56835.13134.1 ID=mRNA_H-elongata_contig56835.13134.1|Name=mRNA_H-elongata_contig56835.13134.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1165bp|location=Sequence derived from alignment at H-elongata_contig56835:922..2086- (Himanthalia elongata Himel1 dioecious)
GACGATCTCCGCTTGCTGGATGATGCCATCTCACTTCTAACCCCATCGGA
GGCGCAAGTACGCGTAGTTGAGGTCGACACCTTCACGGTGAGCGGGGGAA
GACTTCCTGTCGGGAAGGGAGTCTAGGTTGTTTCCGAGGCTCTCCCAGGG
AAAGGAGATGCGTTTTTAAATGGCGTTTTTTTTAACTAGAGTACCCGTTT
TTCTTATGATGAGTGCGTTTTGGTGTAATGTTATATATCAAAGGAAAATG
ACACTCTCGTACTACCTTGACTGAAACCTCGTACTGCCTTGTATTTTGTT
GTGATTAGACCGTGTACTGCGCGCGTCGCAAGGGCAGAACTTGCGGCCAT
GTCTAGATTGAAGGCTTATGTTATAACATGATTAGTGAACCAGCCCCCTA
AGTGCAGGCGGTCGTGTTTTGGTACAATACTGGTGTTCGGGGAGGGTGCG
TACTGATCGATCGATCGAGGCGCGGAGGGTAACCGCCCACTCGCTCCACA
AATGAAGTCCACCGTGCAAAAGCACGATGACGAAGCAACAAGATCTGACG
CCTCACCTGAGTCGCACGGAAGTACGGAAATTGAGCACAGGAGTTACTAT
ACCGTGTGAGTACCCCCATAATTGACCTCACGTCGAACTCCGAACACACT
TGCACTTGAAACTATAACATCAGGAAAGCGAGCGATCGATCGCGAGGGGC
AACATCCCTTTGGATGATAAAAATAGTAACTACGCCCTACGACAGAAGAC
CATCATCCTCAAGCGAGCAGCACCGTCGGACGCCTCTCCCGAACAACCCG
TCGCCTCAGAGAAGACAAAAATCATGACCGAAAAAATCCCTCCCTCAGCG
ACGACCGGTAACCCCGCTGCATTTGGCGCTGACCCAAAGATCGGAGAGCC
CACGAAAGATGCCGCTGCAGGCGATAGTGATATCGCCGAGCTGCATTTGG
TGGCAGCTGCGCAGACTCCGCCGCCGGCGTCGACCGAGAGCGCTCGGGAG
GCGGGGTACGGGAGCGGATGTCGTGATATCCCCGAGATTATCCTCTTCTG
GGCGAGGAACCGGCGTAGCGGCGGGAACCTAGTCGTCTGTCCCGAGAACT
CCATGGACCAGCTCATCGAAGCGTACCTCGTGTGCGAGGTGGTGGAGCAT
AGCGAGTCTGTCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig56835:922..2086-

>mRNA_H-elongata_contig56835.13134.1 ID=mRNA_H-elongata_contig56835.13134.1|Name=mRNA_H-elongata_contig56835.13134.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig56835:922..2086- (Himanthalia elongata Himel1 dioecious)
GACGATCTCCGCTTGCTGGATGATGCCATCTCACTTCTAACCCCATCGGA
GGCGCAAGTACGCGTAGTTGAGGTCGACACCTTCACGGACGATCTCCGCT
TGCTGGATGATGCCATCTCACTTCTAACCCCATCGGAGGCGCAAGTACGC
GTAGTTGAGGTCGACACCTTCACGGAAAGCGAGCGATCGATCGCGAGGGG
CAACATCCCTTTGGATGATAAAAATAGTAACTACGCCCTACGACAGAAGA
CCATCATCCTCAAGCGAGCAGCACCGTCGGACGCCTCTCCCGAACAACCC
GTCGCCTCAGAGAAGACAAAAATCATGACCGAAAAAATCCCTCCCTCAGC
GACGACCGGTAACCCCGCTGCATTTGGCGCTGACCCAAAGATCGGAGAGC
CCACGAAAGATGCCGCTGCAGGAAAGCGAGCGATCGATCGCGAGGGGCAA
CATCCCTTTGGATGATAAAAATAGTAACTACGCCCTACGACAGAAGACCA
TCATCCTCAAGCGAGCAGCACCGTCGGACGCCTCTCCCGAACAACCCGTC
GCCTCAGAGAAGACAAAAATCATGACCGAAAAAATCCCTCCCTCAGCGAC
GACCGGTAACCCCGCTGCATTTGGCGCTGACCCAAAGATCGGAGAGCCCA
CGAAAGATGCCGCTGCAGACTCCGCCGCCGGCGTCGACCGAGAGCGCTCG
GGAGGCGGGGTACGGGAGCGGATGTCGTGAACTCCGCCGCCGGCGTCGAC
CGAGAGCGCTCGGGAGGCGGGGTACGGGAGCGGATGTCGTGA
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