mRNA_H-elongata_contig56730.13122.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56730.13122.1
Unique NamemRNA_H-elongata_contig56730.13122.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56730.13122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56730contigH-elongata_contig56730:80..743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size655
Cds size393
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56730.13122.1prot_H-elongata_contig56730.13122.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56730 310..711 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930922.3471205-UTR-H-elongata_contig56730:79..3091622930922.3471205-UTR-H-elongata_contig56730:79..309Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56730 80..309 -
1691679626.0293467-UTR-H-elongata_contig56730:79..3091691679626.0293467-UTR-H-elongata_contig56730:79..309Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56730 80..309 -
1622930922.400917-UTR-H-elongata_contig56730:711..7431622930922.400917-UTR-H-elongata_contig56730:711..743Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56730 712..743 -
1691679626.05968-UTR-H-elongata_contig56730:711..7431691679626.05968-UTR-H-elongata_contig56730:711..743Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56730 712..743 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930922.3664348-CDS-H-elongata_contig56730:309..5501622930922.3664348-CDS-H-elongata_contig56730:309..550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56730 310..550 -
1691679626.0379918-CDS-H-elongata_contig56730:309..5501691679626.0379918-CDS-H-elongata_contig56730:309..550Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56730 310..550 -
1622930922.3845809-CDS-H-elongata_contig56730:559..7111622930922.3845809-CDS-H-elongata_contig56730:559..711Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56730 560..711 -
1691679626.0474606-CDS-H-elongata_contig56730:559..7111691679626.0474606-CDS-H-elongata_contig56730:559..711Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56730 560..711 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56730.13122.1

>prot_H-elongata_contig56730.13122.1 ID=prot_H-elongata_contig56730.13122.1|Name=mRNA_H-elongata_contig56730.13122.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
MLHIRLNIRLHIRLHIRLHIRLYIRLLHIMLHIKLHTRLHTRLHTIFHIR
LLPIRLLTLRAVERENHELGQPRAVATRQHIYYSISMASPAICGYSWVAL
SGDARPRLPLRPRSHREERGLEIAKGMCRL*
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mRNA from alignment at H-elongata_contig56730:80..743-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56730.13122.1 ID=mRNA_H-elongata_contig56730.13122.1|Name=mRNA_H-elongata_contig56730.13122.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=664bp|location=Sequence derived from alignment at H-elongata_contig56730:80..743- (Himanthalia elongata Himel1 dioecious)
TGTATGTTAGATTGCATACTATATTTCGTATTATGCTGCATATTAGATTG
AATATTAGATTACATATTAGATTGCATATTAGATTGCATATTAGATTGTA
TATTAGATTATTGCATATTATGCTGCATATTAAATTGCATACTAGATTGC
ATACTAGATTGCATACTATATTTCATATTAGATTGCCTATTAGATTGCCT
ATTAGATTGCTCACCCTTAGAGCGGTAGAACGTGAAAATCACGAGCTCGG
TCAGCCTCGCGCGGTAGCTACTCGGCAGCATATCTATTATAGTATATCAA
TGGCCAGTCCCGCCATTTGTGGTTATTCATGGGTCGCCCTCAGCGGTGAC
GCCCGACCACGCTTACCTTTGCGCCCACGCTCGCACCGCGAGGAAAGGGG
ACTCGAAATCGCGAAAGGAATGTGTAGGCTCTGAGTTTAACTGCCGGTAG
CACCGTGCGATAGCCGCTAGTCGTCACTCGGCCATACCTAGCCATGGTAG
CACTGTGCCGTACAAATGTTGCAGCTCTACTATTTTTAAGGGAATGTTTT
GCTTCTCTACTATTTTTTCTCGATGGAGTGAACCATGACTGACCCGCATA
ACCCTGACTGACCCGCATTGCACGAAAATCCCATGGGCGCTTGTTCGCCA
AGACGCCTTCAGTC
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Coding sequence (CDS) from alignment at H-elongata_contig56730:80..743-

>mRNA_H-elongata_contig56730.13122.1 ID=mRNA_H-elongata_contig56730.13122.1|Name=mRNA_H-elongata_contig56730.13122.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig56730:80..743- (Himanthalia elongata Himel1 dioecious)
ATGCTGCATATTAGATTGAATATTAGATTACATATTAGATTGCATATTAG
ATTGCATATTAGATTGTATATTAGATTATTGCATATTATGCTGCATATTA
AATTGCATACTAGATTGCATACTAGATTGCATACTATATTTCATATTAGA
TTATGCTGCATATTAGATTGAATATTAGATTACATATTAGATTGCATATT
AGATTGCATATTAGATTGTATATTAGATTATTGCATATTATGCTGCATAT
TAAATTGCATACTAGATTGCATACTAGATTGCATACTATATTTCATATTA
GATTATTGCCTATTAGATTGCTCACCCTTAGAGCGGTAGAACGTGAAAAT
CACGAGCTCGGTCAGCCTCGCGCGGTAGCTACTCGGCAGCATATCTATTA
TAGTATATCAATGGCCAGTCCCGCCATTTGTGGTTATTCATGGGTCGCCC
TCAGCGGTGACGCCCGACCACGCTTACCTTTGCGCCCACGCTCGCACCGC
GAGGAAAGGGGACTCGAAATCGCGAAAGGAATGTGTAGGCTCTGAATTGC
CTATTAGATTGCTCACCCTTAGAGCGGTAGAACGTGAAAATCACGAGCTC
GGTCAGCCTCGCGCGGTAGCTACTCGGCAGCATATCTATTATAGTATATC
AATGGCCAGTCCCGCCATTTGTGGTTATTCATGGGTCGCCCTCAGCGGTG
ACGCCCGACCACGCTTACCTTTGCGCCCACGCTCGCACCGCGAGGAAAGG
GGACTCGAAATCGCGAAAGGAATGTGTAGGCTCTGA
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