mRNA_H-elongata_contig5672.13120.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig5672.13120.1 vs. uniprot
Match: A0A6H5L404_9PHAE (GAF domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L404_9PHAE) HSP 1 Score: 420 bits (1080), Expect = 9.860e-142 Identity = 215/301 (71.43%), Postives = 250/301 (83.06%), Query Frame = 1
Query: 295 PTRTQLRTLFYHSAIPMVGFGIMDNFVMITAGDLIDNTLGVKFGLATLTAAACGQVVSDVCGVCFGGTVDALAAKLGLPSPKLSESQRRKKVSRLTATFGAATGVVLGCFIGMGTLLLVDTNAAEREKKRRQVDTLFATILDDGHHLIGAEICSLFFVDEKKGELWTKVATDSGGAIKTGKMITIPITAGIAGKVVSTKTLYNVADASKDRDHFQGVDLAMKTTTRNLLAVPVISRSEGDDNGKVIAVIEMMNKTAGQFDENDEKLVSMLAAHLSIFIRQLEGGT--HHAYETAQPLQPLP 1191
PT+ QLRTLF HSA PMVGFGIMDNFVMI+AGDLIDNTLGVKFGLATLTAAACGQVVSDVCGVCFGGTV+A A ++GLP+P L+ QR + +L AT GAA GVV+GC +GMGTLL +DT AEREKK+R++D+LFATILDDGH+++GA CSLFFVDE +GELWTKVATD+ G IKTGK+ITIPIT GI G+VV TK L NVAD SK+ +++QGVDLAMKTTTRN+LAVPV+SRS+ D+GKVIAVIEMMNK G FDENDEKLV MLAAH+ F+ Q+ G H Y A PL+ LP
Sbjct: 85 PTQAQLRTLFMHSAAPMVGFGIMDNFVMISAGDLIDNTLGVKFGLATLTAAACGQVVSDVCGVCFGGTVEAFATRMGLPAPDLTLRQRGLRACKLAATSGAACGVVVGCILGMGTLLFMDTTHAEREKKQREMDSLFATILDDGHNIVGAAKCSLFFVDEAEGELWTKVATDNDGEIKTGKLITIPITTGIVGEVVRTKRLLNVADTSKNTNYYQGVDLAMKTTTRNMLAVPVMSRSDEKDDGKVIAVIEMMNKPEG-FDENDEKLVGMLAAHVGAFMGQVSEGRAGRHEYGEAVPLRRLP 384
BLAST of mRNA_H-elongata_contig5672.13120.1 vs. uniprot
Match: A0A8J2F6T4_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J2F6T4_9DINO) HSP 1 Score: 252 bits (644), Expect = 5.930e-76 Identity = 138/294 (46.94%), Postives = 190/294 (64.63%), Query Frame = 1
Query: 271 ETADPNGGPTRTQ-LRTLFYHSAIPMVGFGIMDNFVMITAGDLIDNTLGVKFGLATLTAAACGQVVSDVCGVCFGGTVDALAAKLGLPSPKLSESQRRKKVSRLTATFGAATGVVLGCFIGMGTLLLVDTNAAEREKKRRQVDTLFATILDDGHHLIGAEICSLFFVDEKKGELWTKVATDSGGAIKTGKMITIPITAGIAGKVVSTKTLYNVADASKDRDHFQGVDLAMKTTTRNLLAVPVISRSEGDDNGK----VIAVIEMMNKTAGQFDENDEKLVSMLAAHLSIFIRQL 1137
E + P+ P ++ LR LF+ SA+PMVGFG MDN VMI AGDLIDNT+GVKFGLATLTAAACGQV SDV GVCFGG VDA KLGLP P+L+ +QR + + +TFGA GV++GC +GM +LL +D AAER KK +++DT+FAT++ +G +GAE CSLF V++ LWT+ AT +K +I +P A + G+ V K + NV DA + D A T+ +L VPV S ++ + + V+AV++++N G F + D + MLA H+ IF+ Q+
Sbjct: 114 ENSSPSAEPPDSKTLRQLFFASAVPMVGFGFMDNMVMIQAGDLIDNTIGVKFGLATLTAAACGQVFSDVSGVCFGGVVDAFCLKLGLPVPQLTSAQRTLPLVKRWSTFGAVCGVIVGCTLGMTSLLFMDLEAAERAKKNQELDTIFATVVKEGSEALGAERCSLFVVEDSV--LWTRAAT----GLKGEDIIKVPKEASLVGEAVLRKAVINVPDAYTHPKFNREHDKATGFRTKAVLCVPVFSENDEQEESQGGREVVAVVQLVNSKNGYFSDADLRAAGMLARHVGIFLDQV 401
BLAST of mRNA_H-elongata_contig5672.13120.1 vs. uniprot
Match: A0A6U0JIP6_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0JIP6_9STRA) HSP 1 Score: 243 bits (620), Expect = 2.500e-73 Identity = 136/288 (47.22%), Postives = 185/288 (64.24%), Query Frame = 1
Query: 295 PTRTQLRTLFYHSAIPMVGFGIMDNFVMITAGDLIDNTLGVKFGLATLTAAACGQVVSDVCGVCFGGTVDALAAKLGLPSPKLSESQRRKKVSRLTATFGAATGVVLGCFIGMGTLLLVDTNAAEREKKRRQVDTLFATILDDGHHLIGAEICSLFFVDEKKGELWTKVATDSGGAIKTGKMITIPITAGIAGKVVSTKTLYNVADASKDRDHFQGVDLAMKTTTRNLLAVPVISRSEGDDNGKVIAVIEMMNK-----TAGQFDENDEKLVSMLAAHLSIFIRQLEG 1143
PTR QL + SAIPMVGFG MDN VMI AGDLIDN++G+ FGL+TLTAA GQ +SDV G GG VDA +KL +P+ LS++Q K +R+ T G GVV+GC +GM +L +DT+ ERE+K R++ T+F TI DG L+ AE CSL+ D+ K ELWT+VA+ + K G+++ IP G+AG V T N+ DA +D VD TR+++AVP++ +SEG + +VI I+M+NK T G FDEND KL++MLA H+ F + + G
Sbjct: 45 PTRRQLMIVALRSAIPMVGFGFMDNIVMIQAGDLIDNSIGITFGLSTLTAAGFGQCISDVAGFTSGGLVDAAVSKLNMPTHGLSQAQLSLKSARIYHTAGGCVGVVIGCLLGMCSLFFMDTDKKERERKARELKTIFETITRDGSKLVSAERCSLWMHDQDKHELWTQVASGT----KKGEILRIPDNTGVAGAAVQEATTINILDAYEDSRFNPEVDQKTGFRTRSIIAVPIM-QSEGSGS-RVIGCIQMVNKKNSDFTDGVFDENDAKLLTMLAGHVKAFTKLVAG 326
BLAST of mRNA_H-elongata_contig5672.13120.1 vs. uniprot
Match: A0A7R9U7C3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7C3_9STRA) HSP 1 Score: 240 bits (613), Expect = 8.560e-72 Identity = 133/295 (45.08%), Postives = 184/295 (62.37%), Query Frame = 1
Query: 295 PTRTQLRTLFYHSAIPMVGFGIMDNFVMITAGDLIDNTLGVKFGLATLTAAACGQVVSDVCGVCFGGTVDALAAKLGLPSPKLSESQRRKKVSRLTATFGAATGVVLGCFIGMGTLLLVDTNAAEREKKRRQVDTLFATILDDGHHLIGAEICSLFFVDEKKGELWTKVATDSGGAIK------TGKMITIPITAGIAGKVVSTKTLYNVADASKD-RDHFQGVDLAMKTTTRNLLAVPVISRSE-------GDDNGKVIAVIEMMNKTAGQFDENDEKLVSMLAAHLSIFIRQL 1137
P + QLR LF+ +A+PMVGFG MDN VMI AGD ID+T+GV+FGLAT+TAAA GQ+ SDV GV FGG V+A KLGLP P ++++QRR +S+ A G+ GVV GC +GM L +D +AAE K++R+++ +F T++ + H ++ AE SLF D K+GELW+K + + G + T +I I + G+ L N+ D SKD R H VDL TRNLL PV S E G D +VIAV+E++NK G F +DE++V MLA H+ I + ++
Sbjct: 62 PNKKQLRDLFFAAAVPMVGFGFMDNTVMILAGDAIDSTIGVRFGLATMTAAAFGQICSDVSGVAFGGLVEAAFVKLGLPVPNMTQAQRRMPISKSAAMAGSIIGVVCGCLLGMVNLFALDLDAAEMAKRQRELNKIFRTVIAEAHQVLDAERASLFIYDRKRGELWSKASALANGQDESNAEEGTTNLIRISAQHSLLGEAARHARLINIEDCSKDARFHEFEVDLRAGFHTRNLLLCPVFSGVEAPDAATGGKDGKRVIAVLEVVNKEKGCFTPDDERVVRMLARHVEIVLTEI 356
BLAST of mRNA_H-elongata_contig5672.13120.1 vs. uniprot
Match: A0A7S4N214_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N214_9STRA) HSP 1 Score: 237 bits (604), Expect = 3.500e-70 Identity = 131/288 (45.49%), Postives = 184/288 (63.89%), Query Frame = 1
Query: 295 PTRTQLRTLFYHSAIPMVGFGIMDNFVMITAGDLIDNTLGVKFGLATLTAAACGQVVSDVCGVCFGGTVDALAAKLGLPSPKLSESQRRKKVSRLTATFGAATGVVLGCFIGMGTLLLVDTNAAEREKKRRQVDTLFATILDDGHHLIGAEICSLFFVDEKKGELWTKVATDSGGAIKTGKMITIPITAGIAGKVVSTKTLYNVADASKDRDHFQGVDLAMKTTTRNLLAVPVISRSEGDDNGKVIAVIEMMNK-----TAGQFDENDEKLVSMLAAHLSIFIRQLEG 1143
PTR +L + HSAIPMVGFG MDN VMI AG++ID T+GV FGL+TLTAA GQ VSDV G GG VDA K+ LPS LS++Q R + +R+ T G GVV GC +GM +L +DT+ AE+ KK +++ ++F ++ DGH LI AE C+L+ D +K ELW+KVAT +K ++ IP + G+AG V ++ + N+ DA +D + +D TR++LAVPV ++ GKVI I+M+NK T FD ND K++ ML++H+S FI+ + G
Sbjct: 107 PTRRELLIVALHSAIPMVGFGFMDNLVMIQAGEMIDLTIGVTFGLSTLTAAGFGQCVSDVAGFTTGGLVDAAVTKMNLPSHGLSQAQLRLRSARVYHTVGGCIGVVTGCLLGMCSLFFMDTDRAEKLKKAKELTSIFEAVMTDGHKLIKAERCTLWMFDREKDELWSKVAT----GMKGDNILRIPASTGVAGAAVKSEDIVNIHDAYEDDRFNKEIDQQTGYRTRSILAVPV-----KNEEGKVIGAIQMVNKKNEDGTDAVFDINDAKMMMMLSSHVSTFIKIVTG 385
BLAST of mRNA_H-elongata_contig5672.13120.1 vs. uniprot
Match: A0A813G1M1_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G1M1_POLGL) HSP 1 Score: 229 bits (584), Expect = 4.660e-68 Identity = 126/287 (43.90%), Postives = 179/287 (62.37%), Query Frame = 1
Query: 295 PTRTQLRTLFYHSAIPMVGFGIMDNFVMITAGDLIDNTLGVKFGLATLTAAACGQVVSDVCGVCFGGTVDALAAKLGLPSPKLSESQRRKKVSRLTATFGAATGVVLGCFIGMGTLLLVDTNAAEREKKRRQVDTLFATILDDGHHLIGAEICSLFFVDEKKGELWTKVATDSGGAIKTGKMITIPITA-GIAGKVVSTKTLYNVADASKDRDHFQGVDLAMKTTTRNLLAVPVISRSEGDDNGKVIAVIEMMNKT-----AGQFDENDEKLVSMLAAHLSIFIRQL 1137
PTR QLR LF +A+P V FGI+D V++ AGD IDNT+GVKFGL TL AAACGQV+SD CGV FGGT++A+A KLGL P L+++Q+R ++ AT G GV++GC IGM LL++D AAER KK + + T+ T+++ G ++ +L+ VDE+K ELW+ + + G +I +P+T+ IAG V N+ D +KD +GV A R++L PV+ GKV+AVI++MNK + F + D KL+ MLA H ++F+ QL
Sbjct: 42 PTRLQLRRLFVTAAVPFVAFGIVDQTVLLYAGDAIDNTMGVKFGLPTLAAAACGQVLSDTCGVTFGGTIEAMALKLGLQLPGLTDAQKRMGITTRIATLGGVCGVIVGCLIGMLNLLVIDLGAAERAKKEKALSTIMKTVMESGKSVLECSRATLWAVDEEKQELWSSIREHQEKNV--GNIIRVPLTSTSIAGWVAQNNEGVNIPDVTKDPRWSKGVKFADGFELRSMLCAPVVLE------GKVVAVIQLMNKNDKDGNSCAFLKEDVKLIGMLAHHTALFMEQL 320
BLAST of mRNA_H-elongata_contig5672.13120.1 vs. uniprot
Match: A0A7S1UHG3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHG3_9STRA) HSP 1 Score: 227 bits (578), Expect = 7.590e-67 Identity = 124/311 (39.87%), Postives = 183/311 (58.84%), Query Frame = 1
Query: 295 PTRTQLRTLFYHSAIPMVGFGIMDNFVMITAGDLIDNTLGVKFGLATLTAAACGQVVSDVCGVCFGGTVDALAAKLGLPSPKLSESQRRKKVSRLTATFGAATGVVLGCFIGMGTLLLVDTNAAEREKKRRQVDTLFATILDDGHHLIGAEICSLFFVDEKKGELWTKVAT-------DSGGAIKTGKMITIPITAGIAGKVVSTKTLYNVADA-SKDRDHFQGVDLAMKTTTRNLLAVPV------------------ISRSEGD----DNGKVIAVIEMMNKTAGQFDENDEKLVSMLAAHLSIFIRQL 1137
PT QLR LF ++A PMVGFG MDN VMI AGD ID+T+GV+FGLAT+TAAA GQ+ SDV GV FGG V+A K+GLP P ++ +QRR K+ + A G+ GV++GC +GM L +D +A E K++R+++ +F T++ + H ++ AE SLF D K+GELW+ A D A T + + + G+ + N+ D + DR H VDL TRNL+ PV +S +EG+ +N +VIAV+E+ NK G F +DE+++ M+A H+ +F++++
Sbjct: 19 PTNKQLRALFLNAAAPMVGFGFMDNTVMILAGDYIDSTIGVRFGLATMTAAALGQICSDVSGVAFGGVVEAAFLKMGLPVPNMTSAQRRMKICKAYAMGGSIVGVIIGCVLGMLNLFALDLDAVEMAKRQRELNRIFRTVIAEAHEVLEAERASLFIYDRKRGELWSHAAHLEEGAEGDDDDADNTANVFRVSAGHSLLGEAALKGEIINIKDTEADDRFHDFEVDLRDGFVTRNLIICPVFAACEEQEAEEGAKAEGGVSNTEGNGGKKENRRVIAVLEVANKKEGSFTRDDERVIRMIARHVEVFLKEI 329
BLAST of mRNA_H-elongata_contig5672.13120.1 vs. uniprot
Match: A0A448ZFC4_9STRA (GAF domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZFC4_9STRA) HSP 1 Score: 224 bits (571), Expect = 2.630e-65 Identity = 127/301 (42.19%), Postives = 178/301 (59.14%), Query Frame = 1
Query: 295 PTRTQLRTLFYHSAIPMVGFGIMDNFVMITAGDLIDNTLGVKFGLATLTAAACGQVVSDVCGVCFGGTVDALAAKLGLPSPKLSESQRRKKVSRLTATFGAATGVVLGCFIGMGTLLLVDTNAAEREKKRRQVDTLFATILDDGHHLIGAEICSLFFVDEKKGELWTKVATDSGGAIKTGKMITIPITAGIAGKVVSTKTLYNVADASKDRDHFQGVDLAMKTTTRNLLAVPVISRSEGDDNGKVIAVIEMMNK-------------------TAGQFDENDEKLVSMLAAHLSIFIRQLE 1140
PTR QL L SAIPMVGFGIMDN VMITAG ID+T+GV G++T+ AA GQ SDV G+ GG VDA ++L L LS Q +V+R+ T GA GVV GC +GM L +DT+ A+R ++ +++ ++F ++++DGH L+GAE +LF +DE ELW++VAT G +I +P T G G V+ + NV DA D + +D++ T ++L VP+ S S GKV+ I+M+NK T F ENDEK+VS+LA+H++ FIR +E
Sbjct: 93 PTREQLSILAIRSAIPMVGFGIMDNVVMITAGGAIDSTIGVSLGISTMAAAGLGQCCSDVAGITSGGIVDAAVSRLNLRHHGLSPQQLDTRVARVCGTIGACVGVVTGCLLGMTVLFCMDTDKADRARRAKELKSIFESVMNDGHKLVGAERATLFLIDEDSNELWSQVATGMEGE----NIIKVPSTKGCVGTSVTNNIVCNVPDAYASEDFNKEIDVSTGYRTVSILVVPIRSES-----GKVLGAIQMINKKQQPQEGFDGDIADNSNDATIIPFSENDEKVVSVLASHVASFIRVVE 384
BLAST of mRNA_H-elongata_contig5672.13120.1 vs. uniprot
Match: A0A7S4RW45_9DINO (Hypothetical protein n=5 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RW45_9DINO) HSP 1 Score: 223 bits (568), Expect = 4.830e-65 Identity = 120/285 (42.11%), Postives = 180/285 (63.16%), Query Frame = 1
Query: 295 PTRTQLRTLFYHSAIPMVGFGIMDNFVMITAGDLIDNTLGVKFGLATLTAAACGQVVSDVCGVCFGGTVDALAAKLGLPSPKLSESQRRKKVSRLTATFGAATGVVLGCFIGMGTLLLVDTNAAEREKKRRQVDTLFATILDDGHHLIGAEICSLFFVDEKKGELWTKVATDSGGAIKTGKMITIPITAGIAGKVVSTKTLYNVADASKDRDHFQGVDLAMKTTTRNLLAVPVISRSEGDDNGKVIAVIEMMNKTAGQ----FDENDEKLVSMLAAHLSIFIRQL 1137
PTR QL LF +SA+P V FGI+D V+I AGD IDNT+GV GL TL AAA GQV+SD CGV FGGT++A+ KLGLP P L+++Q+R V++ +T G GV++GC IGM LLL+D A+ER KK ++++T+ T++ DG + E +L+ VD++ GELW+ VAT G ++ + IAG V + NVAD +KD ++ + + +++L PV+ +G+ +AVI+++NK G+ F+ +DEK++ M H++IF+ QL
Sbjct: 98 PTRQQLSRLFVNSAVPFVAFGIVDQSVLIWAGDAIDNTVGVCLGLPTLAAAAMGQVLSDTCGVTFGGTIEAVCLKLGLPLPGLTDAQQRLGVTKRVSTLGGVIGVIVGCIIGMSNLLLIDLQASERAKKAKELETIMKTVMADGRSSMSCERATLWIVDKEAGELWSSVATGVDGILRVNYTKDV----SIAGWVAQHSEMANVADVTKD-PRWRRDNGSSDFVPKSMLVGPVVR------DGEAVAVIQLLNKREGERITTFNADDEKVLQMFCGHIAIFMEQL 371
BLAST of mRNA_H-elongata_contig5672.13120.1 vs. uniprot
Match: A0A7S2WKW4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WKW4_9STRA) HSP 1 Score: 221 bits (562), Expect = 1.460e-64 Identity = 130/286 (45.45%), Postives = 173/286 (60.49%), Query Frame = 1
Query: 295 PTRTQLRTLFYHSAIPMVGFGIMDNFVMITAGDLIDNTLGVKFGLATLTAAACGQVVSDVCGVCFGGTVDALAAKLGLPSPKLSESQRRKKVSRLTATFGAATGVVLGCFIGMGTLLLVDTNAAEREKKRRQVDTLFATILDDGHHLIGAEICSLFFVDEKKGELWTKVATDSGGAIKTGKMITIPITAGIAGKVVSTKTLYNVADASKDRDHFQGVDLAMKTTTRNLLAVPVISRSEGDDNGKVIAVIEMMNK-----TAGQFDENDEKLVSMLAAHLSIFIRQL 1137
PT QLR + SAIPMVGFG MDN VMI AG+ ID T+GV FGL+TLTAA GQ VSDV G GG VDA +KL LP LS +Q + SR+ T G GVV GC +GM +LL +DTN AER KK +++ ++F T++D GH LI AE CSL+ +D++ +LW+ VAT I I + G G S + N++DA D +D TTR++L VPV DD+G+VI V++M+NK T F+ +D ++V MLA H++ FI+ L
Sbjct: 65 PTDRQLRIVALRSAIPMVGFGFMDNLVMIQAGEFIDLTIGVTFGLSTLTAAGFGQCVSDVAGFTSGGVVDASVSKLKLPHHNLSLAQLGLRRSRIYLTAGGCVGVVFGCLLGMTSLLFMDTNKAERMKKAKEMKSIFNTVMDAGHKLILAERCSLWVLDKETNDLWSNVATGIAE-------IRIKQSQGFVGSCASMGQVINISDAYNDSRFNPAIDKESGFTTRSVLCVPV-----KDDDGEVIGVVQMINKKNEDGTNAVFESSDIRVVEMLALHVNCFIKIL 338 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5672.13120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig5672.13120.1 >prot_H-elongata_contig5672.13120.1 ID=prot_H-elongata_contig5672.13120.1|Name=mRNA_H-elongata_contig5672.13120.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=399bp MRALIMRKNISAFTWMIRRTYCRCAGHSLARGSSKFERLSSKTSDTLFDAback to top mRNA from alignment at H-elongata_contig5672:6543..11193- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig5672.13120.1 ID=mRNA_H-elongata_contig5672.13120.1|Name=mRNA_H-elongata_contig5672.13120.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4651bp|location=Sequence derived from alignment at H-elongata_contig5672:6543..11193- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig5672:6543..11193- >mRNA_H-elongata_contig5672.13120.1 ID=mRNA_H-elongata_contig5672.13120.1|Name=mRNA_H-elongata_contig5672.13120.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2394bp|location=Sequence derived from alignment at H-elongata_contig5672:6543..11193- (Himanthalia elongata Himel1 dioecious)back to top |