mRNA_H-elongata_contig5663.13108.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5663.13108.1
Unique NamemRNA_H-elongata_contig5663.13108.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5663.13108.1 vs. uniprot
Match: A0A6H5JI45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI45_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.560e-7
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    7 DAPRGQLAERTGKMRALGALDIMQVIGTFSDSESIDEAREARELSPRIR 153
            +A  G LA R+GKMRALG LD+MQV+GTFSDSES  +  +  E SPR R
Sbjct: 1828 EARDGLLATRSGKMRALGTLDLMQVVGTFSDSESPSDDIDIEETSPRAR 1876
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5663.13108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JI45_9PHAE1.560e-761.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5663contigH-elongata_contig5663:9839..10506 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size304
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930920.7692761-CDS-H-elongata_contig5663:9839..100641622930920.7692761-CDS-H-elongata_contig5663:9839..10064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5663 9840..10064 -
1691679625.3648365-CDS-H-elongata_contig5663:9839..100641691679625.3648365-CDS-H-elongata_contig5663:9839..10064Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5663 9840..10064 -
1622930920.783773-CDS-H-elongata_contig5663:10428..105061622930920.783773-CDS-H-elongata_contig5663:10428..10506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5663 10429..10506 -
1691679625.3731318-CDS-H-elongata_contig5663:10428..105061691679625.3731318-CDS-H-elongata_contig5663:10428..10506Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5663 10429..10506 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5663.13108.1prot_H-elongata_contig5663.13108.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5663 9840..10506 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5663.13108.1

>prot_H-elongata_contig5663.13108.1 ID=prot_H-elongata_contig5663.13108.1|Name=mRNA_H-elongata_contig5663.13108.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
GRDAPRGQLAERTGKMRALGALDIMQVIGTFSDSESIDEAREARELSPRI
RRTMSPRAQALIAEGRPTSPIHVVVPYTDAQTRSRIPNIQAVRASAPVTP
E
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mRNA from alignment at H-elongata_contig5663:9839..10506-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5663.13108.1 ID=mRNA_H-elongata_contig5663.13108.1|Name=mRNA_H-elongata_contig5663.13108.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=668bp|location=Sequence derived from alignment at H-elongata_contig5663:9839..10506- (Himanthalia elongata Himel1 dioecious)
GGGAGGGATGCGCCAAGAGGACAGTTGGCGGAGAGGACGGGAAAGATGAG
GGCCTTGGGTGCCCTGGACATTATGCAGGTGACTAGAAAATATACTGGGT
TGGGTTATAGGGTCATAGGGTAATGATGATCCGTCAGTTTATGCAGCACG
TGGACCGGTTTTAAGTATTGAGCCTCGCATCGACACAACACGCCGGAATT
TATTATATAGTGCAATACTGTATAGTATAGGGAGATAGATCATTTATGCT
GTTATTCCGGTACACATTTGTACCGCACCGCACCGCTGTATTTTCGGAAA
AACTCAAGCGGCGTTGTTGGGATGTATGACCAAATAATCTTATGTTTGTG
TTTGCTTTTATCTGTTGATTGCGACCGTCGTCTTGTTAACTCGACTTTTC
CGTGTGGCGGCGTTTTTCCTTTTATGTCCATCTTATTTCCAGGTCATCGG
AACTTTTTCCGATTCCGAAAGTATAGACGAGGCGAGAGAGGCAAGAGAGC
TGTCACCGCGAATAAGACGGACAATGTCACCGCGGGCGCAAGCCCTAATA
GCCGAGGGCCGGCCCACCTCCCCGATCCACGTGGTTGTACCATATACGGA
CGCTCAGACCCGGTCACGCATACCCAACATCCAAGCAGTGCGGGCTAGCG
CTCCAGTGACGCCAGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig5663:9839..10506-

>mRNA_H-elongata_contig5663.13108.1 ID=mRNA_H-elongata_contig5663.13108.1|Name=mRNA_H-elongata_contig5663.13108.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig5663:9839..10506- (Himanthalia elongata Himel1 dioecious)
GGGAGGGATGCGCCAAGAGGACAGTTGGCGGAGAGGACGGGAAAGATGAG
GGCCTTGGGTGCCCTGGACATTATGCAGGGGAGGGATGCGCCAAGAGGAC
AGTTGGCGGAGAGGACGGGAAAGATGAGGGCCTTGGGTGCCCTGGACATT
ATGCAGGTCATCGGAACTTTTTCCGATTCCGAAAGTATAGACGAGGCGAG
AGAGGCAAGAGAGCTGTCACCGCGAATAAGACGGACAATGTCACCGCGGG
CGCAAGCCCTAATAGCCGAGGGCCGGCCCACCTCCCCGATCCACGTGGTT
GTACCATATACGGACGCTCAGACCCGGTCACGCATACCCAACATCCAAGC
AGTGCGGGCTAGCGCTCCAGTGACGCCAGAGGTCATCGGAACTTTTTCCG
ATTCCGAAAGTATAGACGAGGCGAGAGAGGCAAGAGAGCTGTCACCGCGA
ATAAGACGGACAATGTCACCGCGGGCGCAAGCCCTAATAGCCGAGGGCCG
GCCCACCTCCCCGATCCACGTGGTTGTACCATATACGGACGCTCAGACCC
GGTCACGCATACCCAACATCCAAGCAGTGCGGGCTAGCGCTCCAGTGACG
CCAGAG
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