mRNA_H-elongata_contig56372.13085.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56372.13085.1
Unique NamemRNA_H-elongata_contig56372.13085.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56372.13085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56372contigH-elongata_contig56372:1275..1936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size492
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56372.13085.1prot_H-elongata_contig56372.13085.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56372 1427..1890 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930917.8624792-UTR-H-elongata_contig56372:1274..14261622930917.8624792-UTR-H-elongata_contig56372:1274..1426Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56372 1275..1426 -
1691679624.15509-UTR-H-elongata_contig56372:1274..14261691679624.15509-UTR-H-elongata_contig56372:1274..1426Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56372 1275..1426 -
1622930917.9070947-UTR-H-elongata_contig56372:1890..19361622930917.9070947-UTR-H-elongata_contig56372:1890..1936Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56372 1891..1936 -
1691679624.190779-UTR-H-elongata_contig56372:1890..19361691679624.190779-UTR-H-elongata_contig56372:1890..1936Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig56372 1891..1936 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930917.878586-CDS-H-elongata_contig56372:1426..16111622930917.878586-CDS-H-elongata_contig56372:1426..1611Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56372 1427..1611 -
1691679624.1687813-CDS-H-elongata_contig56372:1426..16111691679624.1687813-CDS-H-elongata_contig56372:1426..1611Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56372 1427..1611 -
1622930917.8918388-CDS-H-elongata_contig56372:1781..18901622930917.8918388-CDS-H-elongata_contig56372:1781..1890Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56372 1782..1890 -
1691679624.1809266-CDS-H-elongata_contig56372:1781..18901691679624.1809266-CDS-H-elongata_contig56372:1781..1890Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56372 1782..1890 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56372.13085.1

>prot_H-elongata_contig56372.13085.1 ID=prot_H-elongata_contig56372.13085.1|Name=mRNA_H-elongata_contig56372.13085.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
MKGFQGGLVLTLVHSKVYGLAPSWSSSQSIAHRHWRGPYVLPRRATRRTS
GEIGTPGDKSSSSTSSAESDLGNASDPSALGNVQKVYLFACDYLGFI*
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mRNA from alignment at H-elongata_contig56372:1275..1936-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56372.13085.1 ID=mRNA_H-elongata_contig56372.13085.1|Name=mRNA_H-elongata_contig56372.13085.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=662bp|location=Sequence derived from alignment at H-elongata_contig56372:1275..1936- (Himanthalia elongata Himel1 dioecious)
GCTATCATATGTATCACTGCAGCCAATCTACGTCTTCACCCGCAGGATGA
AAGGGTTTCAAGGCGGTTTGGTATTAACGCTTGTACACTCGAAGGTGTAC
GGACTAGCACCCTCTTGGTCATCGTCACAATCGATAGCACATAGACATTG
GCGAGGTGAAGTCTCGCTGGCTCCAACGTTTCCGCACAGAGCACTTTTAC
GTCCCCTCACTGACGGTTCAAGTTACTACTACATGTTACGTACCCCATAT
ATCTTATTTAGATTGCCAGATCAGCATGGTGTCGATTAAACTGACCTTAC
ATCAATGTCACCCTTTGTTTTACAGGTCCGTATGTTTTGCCTCGTCGAGC
AACTCGTAGAACGTCGGGGGAAATCGGAACCCCTGGAGATAAATCTTCAA
GTTCAACCAGTTCAGCGGAATCAGACCTTGGAAACGCTTCCGACCCCAGT
GCTCTTGGCAACGTTCAGAAGGTTTATTTATTCGCTTGCGATTATTTAGG
GTTCATTTGACAGACTCTATGCCATTGGGGTGATGTCTCACAGCATGCAC
CTTTGACCTGGAACTCATTAGCTGAAAGACGGCAGATAAGTGCAACAGGG
CATGTTGAGCGCGGCCCGCGGTAGGTTTGATATCAACATGTGAAAATACT
GAAACCCTGGGA
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Coding sequence (CDS) from alignment at H-elongata_contig56372:1275..1936-

>mRNA_H-elongata_contig56372.13085.1 ID=mRNA_H-elongata_contig56372.13085.1|Name=mRNA_H-elongata_contig56372.13085.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig56372:1275..1936- (Himanthalia elongata Himel1 dioecious)
ATGAAAGGGTTTCAAGGCGGTTTGGTATTAACGCTTGTACACTCGAAGGT
GTACGGACTAGCACCCTCTTGGTCATCGTCACAATCGATAGCACATAGAC
ATTGGCGAGATGAAAGGGTTTCAAGGCGGTTTGGTATTAACGCTTGTACA
CTCGAAGGTGTACGGACTAGCACCCTCTTGGTCATCGTCACAATCGATAG
CACATAGACATTGGCGAGGTCCGTATGTTTTGCCTCGTCGAGCAACTCGT
AGAACGTCGGGGGAAATCGGAACCCCTGGAGATAAATCTTCAAGTTCAAC
CAGTTCAGCGGAATCAGACCTTGGAAACGCTTCCGACCCCAGTGCTCTTG
GCAACGTTCAGAAGGTTTATTTATTCGCTTGCGATTATTTAGGGTTCATT
TGAGTCCGTATGTTTTGCCTCGTCGAGCAACTCGTAGAACGTCGGGGGAA
ATCGGAACCCCTGGAGATAAATCTTCAAGTTCAACCAGTTCAGCGGAATC
AGACCTTGGAAACGCTTCCGACCCCAGTGCTCTTGGCAACGTTCAGAAGG
TTTATTTATTCGCTTGCGATTATTTAGGGTTCATTTGA
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