mRNA_H-elongata_contig56343.13081.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56343.13081.1
Unique NamemRNA_H-elongata_contig56343.13081.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig56343.13081.1 vs. uniprot
Match: A0A2H1VB05_SPOFR (SFRICE_041671 (Fragment) n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1VB05_SPOFR)

HSP 1 Score: 49.7 bits (117), Expect = 3.450e-5
Identity = 25/83 (30.12%), Postives = 44/83 (53.01%), Query Frame = 1 
Query:   58 VQGAESPGEAWSKLVQHYHASGLKERLRLTVDFYTMKMELGEHPRKFLLRVDQMVKELERVERRVDPKDVDIVILSGLTPQYD 306
            ++ A+S  EAW  L + Y   GL  RL L    ++ K+        +L ++ ++  +L  +E  +D + V +++LSGLT  YD
Sbjct:   43 IRTAKSAHEAWKILQKAYEGRGLSRRLGLLRSLFSTKLSENSSMEVYLNKIKEISHQLNEIESPLDDEFVAVIMLSGLTDDYD 125
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BLAST of mRNA_H-elongata_contig56343.13081.1 vs. uniprot
Match: UPI00193D6898 (uncharacterized protein LOC113006278 n=1 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193D6898)

HSP 1 Score: 50.8 bits (120), Expect = 5.350e-5
Identity = 30/107 (28.04%), Postives = 54/107 (50.47%), Query Frame = 1 
Query:    4 HQAWVSLITTCKGVAFEIVQGAESPGEAWSKLVQHYHASGLKERLRLTVDFYTMKMELGEHPRKFLLRVDQMVKELERVERRVDPKDVDIVILSGLTPQYDAEVRML 324
             +A   +    K  A+  V+ AE+  EAWS L + Y   GL  RL L      MK++  ++   ++  +  + ++L  ++  +D + V +++LSGLT  Y+  V  L
Sbjct:   58 QKALAKICLMIKPSAYAYVRSAENAKEAWSNLQKAYEDKGLSRRLTLLRTLSGMKLQNFKNMELYVSEIMSISQKLADMDAALDDEFVAVIMLSGLTEDYNPMVMAL 164
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BLAST of mRNA_H-elongata_contig56343.13081.1 vs. uniprot
Match: UPI00103F0D66 (uncharacterized protein LOC114362197 n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103F0D66)

HSP 1 Score: 49.3 bits (116), Expect = 7.680e-5
Identity = 26/83 (31.33%), Postives = 44/83 (53.01%), Query Frame = 1 
Query:   58 VQGAESPGEAWSKLVQHYHASGLKERLRLTVDFYTMKMELGEHPRKFLLRVDQMVKELERVERRVDPKDVDIVILSGLTPQYD 306
            ++ A+S  EAW+ L + Y   GL  RL L    +  K+        +L ++ ++  +L  +E  +D + V ++ILSGLT  YD
Sbjct:   71 IRTAKSAHEAWTILQKTYEGRGLSRRLGLLRSLFNTKLSECSSMEVYLNKIKEISHQLSEIESPLDDELVAVIILSGLTDDYD 153
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56343.13081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2H1VB05_SPOFR3.450e-530.12SFRICE_041671 (Fragment) n=1 Tax=Spodoptera frugip... [more]
UPI00193D68985.350e-528.04uncharacterized protein LOC113006278 n=1 Tax=Solen... [more]
UPI00103F0D667.680e-531.33uncharacterized protein LOC114362197 n=1 Tax=Ostri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56343contigH-elongata_contig56343:323..646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930917.389105-CDS-H-elongata_contig56343:322..6461622930917.389105-CDS-H-elongata_contig56343:322..646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56343 323..646 +
1691679623.9630005-CDS-H-elongata_contig56343:322..6461691679623.9630005-CDS-H-elongata_contig56343:322..646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56343 323..646 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56343.13081.1prot_H-elongata_contig56343.13081.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56343 323..646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56343.13081.1

>prot_H-elongata_contig56343.13081.1 ID=prot_H-elongata_contig56343.13081.1|Name=mRNA_H-elongata_contig56343.13081.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
AHQAWVSLITTCKGVAFEIVQGAESPGEAWSKLVQHYHASGLKERLRLTV
DFYTMKMELGEHPRKFLLRVDQMVKELERVERRVDPKDVDIVILSGLTPQ
YDAEVRML
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mRNA from alignment at H-elongata_contig56343:323..646+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56343.13081.1 ID=mRNA_H-elongata_contig56343.13081.1|Name=mRNA_H-elongata_contig56343.13081.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig56343:323..646+ (Himanthalia elongata Himel1 dioecious)
GCGCATCAAGCTTGGGTATCGCTGATAACCACGTGCAAGGGAGTAGCGTT
CGAAATCGTCCAAGGAGCTGAGTCACCCGGGGAAGCGTGGTCAAAGCTCG
TGCAGCACTACCACGCCAGCGGCCTCAAGGAACGACTCCGCCTCACTGTG
GACTTCTATACGATGAAGATGGAACTCGGCGAGCATCCGCGCAAATTTTT
GCTGCGGGTGGACCAGATGGTCAAGGAACTAGAAAGGGTGGAGCGACGGG
TGGACCCGAAGGACGTGGACATCGTAATTCTGAGCGGCCTCACCCCCCAG
TACGACGCCGAGGTTCGAATGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig56343:323..646+

>mRNA_H-elongata_contig56343.13081.1 ID=mRNA_H-elongata_contig56343.13081.1|Name=mRNA_H-elongata_contig56343.13081.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig56343:323..646+ (Himanthalia elongata Himel1 dioecious)
GCGCATCAAGCTTGGGTATCGCTGATAACCACGTGCAAGGGAGTAGCGTT
CGAAATCGTCCAAGGAGCTGAGTCACCCGGGGAAGCGTGGTCAAAGCTCG
TGCAGCACTACCACGCCAGCGGCCTCAAGGAACGACTCCGCCTCACTGTG
GACTTCTATACGATGAAGATGGAACTCGGCGAGCATCCGCGCAAATTTTT
GCTGCGGGTGGACCAGATGGTCAAGGAACTAGAAAGGGTGGAGCGACGGG
TGGACCCGAAGGACGTGGACATCGTAATTCTGAGCGGCCTCACCCCCCAG
TACGACGCCGAGGTTCGAATGCTGGCGCATCAAGCTTGGGTATCGCTGAT
AACCACGTGCAAGGGAGTAGCGTTCGAAATCGTCCAAGGAGCTGAGTCAC
CCGGGGAAGCGTGGTCAAAGCTCGTGCAGCACTACCACGCCAGCGGCCTC
AAGGAACGACTCCGCCTCACTGTGGACTTCTATACGATGAAGATGGAACT
CGGCGAGCATCCGCGCAAATTTTTGCTGCGGGTGGACCAGATGGTCAAGG
AACTAGAAAGGGTGGAGCGACGGGTGGACCCGAAGGACGTGGACATCGTA
ATTCTGAGCGGCCTCACCCCCCAGTACGACGCCGAGGTTCGAATGCTG
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