mRNA_H-elongata_contig56319.13077.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig56319.13077.1 vs. uniprot
Match: D8LTJ2_ECTSI (Rab7L, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTJ2_ECTSI) HSP 1 Score: 208 bits (529), Expect = 1.680e-64 Identity = 100/111 (90.09%), Postives = 106/111 (95.50%), Query Frame = 1
Query: 1 VGKTSIMKRYVASDFSERRRPTIGADFMTKEIIAGDQPMLLQQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVSCAVSFEQVAMWREELLVRLDVDPHDFPIVVIGNKV 333
VGKTS+MKRY A DF++ RRPTIGADFMTKE++ GDQPMLLQ IWDTAGQERFHGGSLGSGFFRGANAALLVYDV+CAVSFEQVAMWREELLVRLDVDPHDFPIVVIGNKV
Sbjct: 164 VGKTSLMKRYAAGDFTDYRRPTIGADFMTKEVVEGDQPMLLQ-IWDTAGQERFHGGSLGSGFFRGANAALLVYDVACAVSFEQVAMWREELLVRLDVDPHDFPIVVIGNKV 273
BLAST of mRNA_H-elongata_contig56319.13077.1 vs. uniprot
Match: A0A7S2RVV0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVV0_9STRA) HSP 1 Score: 140 bits (353), Expect = 5.010e-39 Identity = 68/111 (61.26%), Postives = 85/111 (76.58%), Query Frame = 1
Query: 1 VGKTSIMKRYVASDFSERRRPTIGADFMTKEIIAGDQPMLLQQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVSCAVSFEQVAMWREELLVRLDVDPHDFPIVVIGNKV 333
VGKTS+M+R+ + FSE RR T GADF +K + Q ++LQ IWDTAGQERFH G+LG F+RGA+AALLVYD + A SF+QV WR E+L R+DV P DFP+VV+GNKV
Sbjct: 17 VGKTSLMRRFCKNSFSEARRATTGADFSSKRMSFAGQEVMLQ-IWDTAGQERFHHGTLGGAFYRGADAALLVYDATSASSFKQVENWRSEVLSRIDVAPGDFPLVVVGNKV 126
BLAST of mRNA_H-elongata_contig56319.13077.1 vs. uniprot
Match: F0Y7J9_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7J9_AURAN) HSP 1 Score: 130 bits (327), Expect = 8.040e-36 Identity = 63/111 (56.76%), Postives = 82/111 (73.87%), Query Frame = 1
Query: 1 VGKTSIMKRYVASDFSERRRPTIGADFMTKEIIAGDQPMLLQQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVSCAVSFEQVAMWREELLVRLDVDPHDFPIVVIGNKV 333
VGKTS++ ++V F+ RR T GADF +K + GD+ + L IWDTAGQERFH G+LG F+RGA+AALLVYD + +FEQ+ MWR ELL R+D P +FP+VV+GNKV
Sbjct: 21 VGKTSLLMQFVHGKFTPARRVTTGADFASKVLHLGDREVRLV-IWDTAGQERFHHGTLGGAFYRGADAALLVYDTTDIRTFEQIEMWRRELLQRIDGPPEEFPVVVVGNKV 130
BLAST of mRNA_H-elongata_contig56319.13077.1 vs. uniprot
Match: A0A0W0EL55_CANGB (GTP-binding protein YPT7 n=2 Tax=Candida glabrata TaxID=5478 RepID=A0A0W0EL55_CANGB) HSP 1 Score: 125 bits (313), Expect = 8.860e-34 Identity = 58/112 (51.79%), Postives = 80/112 (71.43%), Query Frame = 1
Query: 1 VGKTSIMKRYVASDFSERRRPTIGADFMTKEIIAGDQPMLLQQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVSCAVSFEQVAMWREELLVRLDVD-PHDFPIVVIGNKV 333
VGKTS+M RYV +S++ + TIGADF+TKE++ D ++ Q+WDTAGQERF SLG F+RGA+ +LVYDV+ A SFE + W++E LV ++ P FP V++GNKV
Sbjct: 19 VGKTSLMHRYVNDKYSQQYKATIGADFLTKEVVLDDDKVVTMQVWDTAGQERFQ--SLGVAFYRGADCCVLVYDVTNAKSFENIKSWKDEFLVHANISSPESFPFVILGNKV 128
BLAST of mRNA_H-elongata_contig56319.13077.1 vs. uniprot
Match: A0A1E4TPK7_PACTA (Uncharacterized protein n=1 Tax=Pachysolen tannophilus NRRL Y-2460 TaxID=669874 RepID=A0A1E4TPK7_PACTA) HSP 1 Score: 124 bits (310), Expect = 2.320e-33 Identity = 62/112 (55.36%), Postives = 84/112 (75.00%), Query Frame = 1
Query: 1 VGKTSIMKRYVASDFSERRRPTIGADFMTKEIIAGDQPMLLQQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVSCAVSFEQVAMWREELLVRLDV-DPHDFPIVVIGNKV 333
VGKTS+M+++V FS + + TIGADF+TKE+I D+ + +Q IWDTAGQERF SLG F+RGA+ +LVYDV+ SFE V+ WR+E LV+ ++ DP +FP VVIGNK+
Sbjct: 19 VGKTSLMQQFVNGKFSHQYKATIGADFLTKELIIDDKNVTMQ-IWDTAGQERFQ--SLGVAFYRGADCCVLVYDVTNTKSFESVSSWRDEFLVQANIKDPENFPFVVIGNKI 127
BLAST of mRNA_H-elongata_contig56319.13077.1 vs. uniprot
Match: R7QSY4_CHOCR (GTP-binding protein yptV5 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSY4_CHOCR) HSP 1 Score: 123 bits (309), Expect = 3.370e-33 Identity = 63/112 (56.25%), Postives = 84/112 (75.00%), Query Frame = 1
Query: 1 VGKTSIMKRYVASDFSERRRPTIGADFMTKEIIAGDQPMLLQQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVSCAVSFEQVAMWREELLVRLDV-DPHDFPIVVIGNKV 333
VGKTS+M RYV ++FS++ + TIGADF TK++I D+P+ LQ IWDTAGQER+ SLGS F+RGA+A +LVYD++ A SF+ + WR+E L+ DP FP VV+GNKV
Sbjct: 19 VGKTSLMDRYVCNEFSQQYKATIGADFYTKDVIIDDKPVGLQ-IWDTAGQERYQ--SLGSAFYRGADACVLVYDMTDARSFDALDSWRDEFLISAAPRDPDSFPFVVMGNKV 127
BLAST of mRNA_H-elongata_contig56319.13077.1 vs. uniprot
Match: G8ZY45_TORDC (Uncharacterized protein n=6 Tax=Saccharomycetaceae TaxID=4893 RepID=G8ZY45_TORDC) HSP 1 Score: 123 bits (309), Expect = 3.560e-33 Identity = 58/112 (51.79%), Postives = 78/112 (69.64%), Query Frame = 1
Query: 1 VGKTSIMKRYVASDFSERRRPTIGADFMTKEIIAGDQPMLLQQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVSCAVSFEQVAMWREELLVRLDVD-PHDFPIVVIGNKV 333
VGKTS+M RYV +S++ + TIGADF+TKE++ D + Q+WDTAGQERF SLG F+RGA+ +LVYDV+ SFE + WR+E LV +V P FP V++GNK+
Sbjct: 19 VGKTSLMHRYVNDKYSQQYKATIGADFLTKEVVLDDDKVATMQVWDTAGQERFQ--SLGVAFYRGADCCVLVYDVTNVKSFENIKSWRDEFLVHANVSSPETFPFVILGNKI 128
BLAST of mRNA_H-elongata_contig56319.13077.1 vs. uniprot
Match: A0A0C2XM57_AMAMK (Uncharacterized protein n=4 Tax=Agaricales TaxID=5338 RepID=A0A0C2XM57_AMAMK) HSP 1 Score: 123 bits (308), Expect = 4.650e-33 Identity = 60/112 (53.57%), Postives = 82/112 (73.21%), Query Frame = 1
Query: 1 VGKTSIMKRYVASDFSERRRPTIGADFMTKEIIAGDQPMLLQQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVSCAVSFEQVAMWREELLVRLDV-DPHDFPIVVIGNKV 333
VGKTS+M +YV FS + + TIGADF+TKE+I D+P+ +Q +WDTAGQERF SLG F+RGA+ +LVYDV+ + SFE + WR+E L++ DP +FP VV+GNK+
Sbjct: 16 VGKTSLMNQYVNKRFSNQYKATIGADFLTKEVIVDDRPVTMQ-LWDTAGQERFQ--SLGVAFYRGADCCVLVYDVNSSKSFETLDSWRDEFLIQASPHDPENFPFVVLGNKI 124
BLAST of mRNA_H-elongata_contig56319.13077.1 vs. uniprot
Match: A0A6A6YDE9_9PEZI (Ras-related protein-like protein n=2 Tax=Mytilinidiaceae TaxID=281242 RepID=A0A6A6YDE9_9PEZI) HSP 1 Score: 123 bits (308), Expect = 4.770e-33 Identity = 61/112 (54.46%), Postives = 79/112 (70.54%), Query Frame = 1
Query: 1 VGKTSIMKRYVASDFSERRRPTIGADFMTKEIIAGDQPMLLQQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVSCAVSFEQVAMWREELLVRLD-VDPHDFPIVVIGNKV 333
VGKTS+M +YV FS + TIGADF+TKE++ D ++ Q+WDTAGQERF SLG F+RGA+ +LVYDV+ + SFE + WR+E LV+ +DP FP VVIGNKV
Sbjct: 19 VGKTSLMNQYVNKKFSASYKATIGADFLTKEVVMDDDRVVTLQLWDTAGQERFQ--SLGVAFYRGADCCVLVYDVNNSKSFETLESWRDEFLVQASPMDPESFPFVVIGNKV 128
BLAST of mRNA_H-elongata_contig56319.13077.1 vs. uniprot
Match: W0TG78_KLUMD (GTP-binding protein YPT7 n=4 Tax=Kluyveromyces TaxID=4910 RepID=W0TG78_KLUMD) HSP 1 Score: 123 bits (308), Expect = 4.900e-33 Identity = 59/112 (52.68%), Postives = 78/112 (69.64%), Query Frame = 1
Query: 1 VGKTSIMKRYVASDFSERRRPTIGADFMTKEIIAGDQPMLLQQIWDTAGQERFHGGSLGSGFFRGANAALLVYDVSCAVSFEQVAMWREELLVRLDVD-PHDFPIVVIGNKV 333
VGKTS+M RYV +S++ + TIGADF+TKE+I D + Q+WDTAGQERF SLG F+RGA+ +LVYDV+ A SF+ + WR+E LV +V P FP V++ NKV
Sbjct: 18 VGKTSLMHRYVNDKYSQQYKATIGADFLTKEVIVNDDKVATMQVWDTAGQERFQ--SLGVAFYRGADCCVLVYDVTNAKSFDNIKSWRDEFLVHANVSSPETFPFVILANKV 127 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56319.13077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig56319.13077.1 >prot_H-elongata_contig56319.13077.1 ID=prot_H-elongata_contig56319.13077.1|Name=mRNA_H-elongata_contig56319.13077.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp MKRYVASDFSERRRPTIGADFMTKEIIAGDQPMLLQQIWDTAGQERFHGGback to top mRNA from alignment at H-elongata_contig56319:2731..3729+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig56319.13077.1 ID=mRNA_H-elongata_contig56319.13077.1|Name=mRNA_H-elongata_contig56319.13077.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=999bp|location=Sequence derived from alignment at H-elongata_contig56319:2731..3729+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig56319:2731..3729+ >mRNA_H-elongata_contig56319.13077.1 ID=mRNA_H-elongata_contig56319.13077.1|Name=mRNA_H-elongata_contig56319.13077.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig56319:2731..3729+ (Himanthalia elongata Himel1 dioecious)back to top |