mRNA_H-elongata_contig56019.13035.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig56019.13035.1
Unique NamemRNA_H-elongata_contig56019.13035.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig56019.13035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig56019contigH-elongata_contig56019:2960..3473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size456
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930912.0342615-CDS-H-elongata_contig56019:2959..32491622930912.0342615-CDS-H-elongata_contig56019:2959..3249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56019 2960..3249 -
1691679621.7145472-CDS-H-elongata_contig56019:2959..32491691679621.7145472-CDS-H-elongata_contig56019:2959..3249Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56019 2960..3249 -
1622930912.0573578-CDS-H-elongata_contig56019:3307..34731622930912.0573578-CDS-H-elongata_contig56019:3307..3473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56019 3308..3473 -
1691679621.7264543-CDS-H-elongata_contig56019:3307..34731691679621.7264543-CDS-H-elongata_contig56019:3307..3473Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig56019 3308..3473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig56019.13035.1prot_H-elongata_contig56019.13035.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig56019 2960..3473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig56019.13035.1

>prot_H-elongata_contig56019.13035.1 ID=prot_H-elongata_contig56019.13035.1|Name=mRNA_H-elongata_contig56019.13035.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
TSVSSSSNPSASTGGRGRLRRPLAIVNCKPVVLPPEPVDRVLVGGATPRG
AAGHRLGAASAPVVPAVCFDRARRLRPRPSFVFAVVASARSRTRNHRHHH
QRRGSYYCFWCSRYGDWWRAQRLPRWCPHRHSVQPRQQHCCCPRRAAPVR
CH
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mRNA from alignment at H-elongata_contig56019:2960..3473-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig56019.13035.1 ID=mRNA_H-elongata_contig56019.13035.1|Name=mRNA_H-elongata_contig56019.13035.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=514bp|location=Sequence derived from alignment at H-elongata_contig56019:2960..3473- (Himanthalia elongata Himel1 dioecious)
ACTTCAGTATCTAGCTCATCCAATCCCAGCGCAAGCACCGGCGGACGTGG
TCGCCTTCGACGCCCACTAGCCATCGTCAATTGTAAACCCGTCGTCCTAC
CCCCCGAGCCTGTCGATCGCGTGTTAGTCGGCGGTGCCACGCCTCGGGGT
GCTGCAGGACACCGATGTTTCAACTGGACGGGGCTTCCGCGGGTCCGGTC
ACGCAATATGCATGGCAGCAGCAGTAGGTGCTGCTTCTGCTCCTGTTGTT
CCTGCAGTTTGCTTCGACCGCGCTCGAAGACTCCGCCCCCGTCCAAGCTT
CGTCTTTGCGGTCGTCGCCTCAGCTCGCTCCCGTACAAGGAACCATCGTC
ACCACCACCAGCGCCGTGGAAGCTACTACTGCTTTTGGTGCTCCCGCTAC
GGTGACTGGTGGCGCGCGCAACGTTTACCGCGCTGGTGCCCCCACCGCCA
CTCAGTGCAGCCACGCCAGCAGCATTGTTGTTGCCCTCGACGTGCTGCCC
CTGTCCGTTGCCAT
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Coding sequence (CDS) from alignment at H-elongata_contig56019:2960..3473-

>mRNA_H-elongata_contig56019.13035.1 ID=mRNA_H-elongata_contig56019.13035.1|Name=mRNA_H-elongata_contig56019.13035.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig56019:2960..3473- (Himanthalia elongata Himel1 dioecious)
ACTTCAGTATCTAGCTCATCCAATCCCAGCGCAAGCACCGGCGGACGTGG
TCGCCTTCGACGCCCACTAGCCATCGTCAATTGTAAACCCGTCGTCCTAC
CCCCCGAGCCTGTCGATCGCGTGTTAGTCGGCGGTGCCACGCCTCGGGGT
GCTGCAGGACACCGATACTTCAGTATCTAGCTCATCCAATCCCAGCGCAA
GCACCGGCGGACGTGGTCGCCTTCGACGCCCACTAGCCATCGTCAATTGT
AAACCCGTCGTCCTACCCCCCGAGCCTGTCGATCGCGTGTTAGTCGGCGG
TGCCACGCCTCGGGGTGCTGCAGGACACCGATTAGGTGCTGCTTCTGCTC
CTGTTGTTCCTGCAGTTTGCTTCGACCGCGCTCGAAGACTCCGCCCCCGT
CCAAGCTTCGTCTTTGCGGTCGTCGCCTCAGCTCGCTCCCGTACAAGGAA
CCATCGTCACCACCACCAGCGCCGTGGAAGCTACTACTGCTTTTGGTGCT
CCCGCTACGGTGACTGGTGGCGCGCGCAACGTTTACCGCGCTGGTGCCCC
CACCGCCACTCAGTGCAGCCACGCCAGCAGCATTGTTGTTGCCCTCGACG
TGCTGCCCCTGTCCGTTGCCATTAGGTGCTGCTTCTGCTCCTGTTGTTCC
TGCAGTTTGCTTCGACCGCGCTCGAAGACTCCGCCCCCGTCCAAGCTTCG
TCTTTGCGGTCGTCGCCTCAGCTCGCTCCCGTACAAGGAACCATCGTCAC
CACCACCAGCGCCGTGGAAGCTACTACTGCTTTTGGTGCTCCCGCTACGG
TGACTGGTGGCGCGCGCAACGTTTACCGCGCTGGTGCCCCCACCGCCACT
CAGTGCAGCCACGCCAGCAGCATTGTTGTTGCCCTCGACGTGCTGCCCCT
GTCCGTTGCCAT
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