mRNA_H-elongata_contig5576.13007.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig5576.13007.1
Unique NamemRNA_H-elongata_contig5576.13007.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig5576.13007.1 vs. uniprot
Match: D8LGW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGW0_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 1.310e-22
Identity = 54/104 (51.92%), Postives = 70/104 (67.31%), Query Frame = 1 
Query:   13 SSLWMTTTGNPACSVRVIGDDRDFHRDRQGEPLFSPQSFLLAYPPGPYTCLRTTKNRSVAMLSFHLNRLWESAEATDLKDVARHEGRRSLERRTVDAISRAMEA 324
            + L M++T   A SV     + +  R   G PL SPQ FLLA PPGPYTCLRT  +RSVAML FHL+RLW+S++AT     AR +GR+SLE+ TV+ I+R  E+
Sbjct:   66 TELEMSST--TATSVWATCGEPEVRRCPAGGPLSSPQEFLLANPPGPYTCLRTVDHRSVAMLPFHLDRLWQSSQATGFGPAARAQGRQSLEQETVETIARVTES 167
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BLAST of mRNA_H-elongata_contig5576.13007.1 vs. uniprot
Match: A0A6H5LF55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LF55_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.160e-21
Identity = 54/104 (51.92%), Postives = 69/104 (66.35%), Query Frame = 1 
Query:   13 SSLWMTTTGNPACSVRVIGDDRDFHRDRQGEPLFSPQSFLLAYPPGPYTCLRTTKNRSVAMLSFHLNRLWESAEATDLKDVARHEGRRSLERRTVDAISRAMEA 324
            + L M++T   A SV     + +  R   G PL SPQ FLLA PPGPYTCLRT  +RSVAML FHL+RLW S++AT     AR +GR+SLE+ TV+ I+R  E+
Sbjct:   65 ADLEMSST--TATSVWATCGEPEVRRCPAGGPLSSPQEFLLANPPGPYTCLRTVDHRSVAMLPFHLDRLWHSSQATGFGPAARAQGRQSLEQGTVETIARVTES 166
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig5576.13007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGW0_ECTSI1.310e-2251.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LF55_9PHAE1.160e-2151.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig5576contigH-elongata_contig5576:5042..5806 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue7.9e-19
Seed eggNOG ortholog2880.D8LGW0
EggNOG free text desc.Amino-transferase class IV
EggNOG OGs2CZHV@1,2SAEW@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size325
Cds size300
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig5576.13007.1prot_H-elongata_contig5576.13007.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig5576 5066..5806 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930908.8936794-UTR-H-elongata_contig5576:5041..50651622930908.8936794-UTR-H-elongata_contig5576:5041..5065Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5576 5042..5065 +
1691679620.445876-UTR-H-elongata_contig5576:5041..50651691679620.445876-UTR-H-elongata_contig5576:5041..5065Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig5576 5042..5065 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930908.9098656-CDS-H-elongata_contig5576:5065..51891622930908.9098656-CDS-H-elongata_contig5576:5065..5189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5576 5066..5189 +
1691679620.4581144-CDS-H-elongata_contig5576:5065..51891691679620.4581144-CDS-H-elongata_contig5576:5065..5189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5576 5066..5189 +
1622930908.9263089-CDS-H-elongata_contig5576:5630..58061622930908.9263089-CDS-H-elongata_contig5576:5630..5806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5576 5631..5806 +
1691679620.4680846-CDS-H-elongata_contig5576:5630..58061691679620.4680846-CDS-H-elongata_contig5576:5630..5806Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig5576 5631..5806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig5576.13007.1

>prot_H-elongata_contig5576.13007.1 ID=prot_H-elongata_contig5576.13007.1|Name=mRNA_H-elongata_contig5576.13007.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MTTTGNPACSVRVIGDDRDFHRDRQGEPLFSPQSFLLAYPPGPYTCLRTT
KNRSVAMLSFHLNRLWESAEATDLKDVARHEGRRSLERRTVDAISRAMEA
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mRNA from alignment at H-elongata_contig5576:5042..5806+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig5576.13007.1 ID=mRNA_H-elongata_contig5576.13007.1|Name=mRNA_H-elongata_contig5576.13007.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=765bp|location=Sequence derived from alignment at H-elongata_contig5576:5042..5806+ (Himanthalia elongata Himel1 dioecious)
AGACGAATCACCTCTTCTTTGTGGATGACTACCACCGGTAACCCTGCATG
TAGCGTGCGTGTGATAGGCGACGATCGAGATTTCCATCGTGATCGTCAAG
GCGAACCGCTCTTTTCTCCGCAGAGCTTTCTTCTAGCCTATCCCCCAGGC
GAGCGACGATCCAAGTTTTATCTTGTTTCTACTCTTGCCACCGCCCATGT
ACGCGTTTAATGATTGGGGAATCTCTATATTTGCCTTTATGAGTTGCGTA
TAATATTCGAATGTTACACATGAGATTAAGCCATGTGTGTTCCCACAGGG
AACGGAGCTTGCTCTTGGGTACCAATAGTTGAATGAAGTAGCGCAATACT
AGGAACTAAGGGGCGCTGGATATTGATCCAAATGTATCTCCATTGTAACA
CAAAAGTGATCAAGATGCTGATCTCAGAAACGTTTAAGTCGTTAGTCTCG
AAAAGAAGTAAACATAGCACAACAACCTTGCTGCCCTCAATTACGGCTGT
GATCGGCATATATCGCCCCTGATATCTGGTCAACCCTGCACACGCCATGG
ACGAGCTCATATATTTGCCACACTTCATTATTGCGCCAGGACCATACACG
TGCCTTAGGACGACCAAGAATCGCTCAGTAGCGATGCTGTCATTCCATTT
GAACAGACTTTGGGAATCGGCGGAAGCCACTGATTTGAAGGATGTGGCGA
GGCACGAAGGCCGTCGCTCGCTGGAGAGGAGAACCGTCGACGCTATATCC
AGGGCAATGGAGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig5576:5042..5806+

>mRNA_H-elongata_contig5576.13007.1 ID=mRNA_H-elongata_contig5576.13007.1|Name=mRNA_H-elongata_contig5576.13007.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig5576:5042..5806+ (Himanthalia elongata Himel1 dioecious)
ATGACTACCACCGGTAACCCTGCATGTAGCGTGCGTGTGATAGGCGACGA
TCGAGATTTCCATCGTGATCGTCAAGGCGAACCGCTCTTTTCTCCGCAGA
GCTTTCTTCTAGCCTATCCCCCAGATGACTACCACCGGTAACCCTGCATG
TAGCGTGCGTGTGATAGGCGACGATCGAGATTTCCATCGTGATCGTCAAG
GCGAACCGCTCTTTTCTCCGCAGAGCTTTCTTCTAGCCTATCCCCCAGGA
CCATACACGTGCCTTAGGACGACCAAGAATCGCTCAGTAGCGATGCTGTC
ATTCCATTTGAACAGACTTTGGGAATCGGCGGAAGCCACTGATTTGAAGG
ATGTGGCGAGGCACGAAGGCCGTCGCTCGCTGGAGAGGAGAACCGTCGAC
GCTATATCCAGGGCAATGGAGGCGGACCATACACGTGCCTTAGGACGACC
AAGAATCGCTCAGTAGCGATGCTGTCATTCCATTTGAACAGACTTTGGGA
ATCGGCGGAAGCCACTGATTTGAAGGATGTGGCGAGGCACGAAGGCCGTC
GCTCGCTGGAGAGGAGAACCGTCGACGCTATATCCAGGGCAATGGAGGCG
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