mRNA_H-elongata_contig55562.12976.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55562.12976.1
Unique NamemRNA_H-elongata_contig55562.12976.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55562.12976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55562contigH-elongata_contig55562:1257..1637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size381
Cds size351
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930905.8144355-UTR-H-elongata_contig55562:1256..12861622930905.8144355-UTR-H-elongata_contig55562:1256..1286Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55562 1257..1286 +
1691679619.2849486-UTR-H-elongata_contig55562:1256..12861691679619.2849486-UTR-H-elongata_contig55562:1256..1286Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55562 1257..1286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930905.826994-CDS-H-elongata_contig55562:1286..16371622930905.826994-CDS-H-elongata_contig55562:1286..1637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55562 1287..1637 +
1691679619.2927718-CDS-H-elongata_contig55562:1286..16371691679619.2927718-CDS-H-elongata_contig55562:1286..1637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55562 1287..1637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55562.12976.1prot_H-elongata_contig55562.12976.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55562 1287..1637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55562.12976.1

>prot_H-elongata_contig55562.12976.1 ID=prot_H-elongata_contig55562.12976.1|Name=mRNA_H-elongata_contig55562.12976.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=117bp
MIDDEDSEIAKEQVKKGLEEFTMENGKLIIEYIAKAESVAINVRYYDIEV
SDQEVSLRTLNGLPSSYAPEKRNFSLREDFTSSDLEDGQTRVEDLKKRLD
RVDGNYALAAGFKARSS
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mRNA from alignment at H-elongata_contig55562:1257..1637+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55562.12976.1 ID=mRNA_H-elongata_contig55562.12976.1|Name=mRNA_H-elongata_contig55562.12976.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=381bp|location=Sequence derived from alignment at H-elongata_contig55562:1257..1637+ (Himanthalia elongata Himel1 dioecious)
CCCTCCGAGGCATGGACATTCCTCAATAGTATGATTGATGATGAAGACAG
CGAAATAGCGAAAGAGCAGGTGAAGAAAGGTCTCGAAGAATTTACAATGG
AAAATGGCAAATTAATAATCGAATACATTGCCAAGGCAGAATCCGTAGCC
ATAAATGTAAGGTATTATGACATTGAAGTTTCCGACCAAGAGGTTAGCCT
TAGAACTCTAAATGGTCTTCCCTCTTCTTACGCCCCTGAGAAGCGAAATT
TTTCCCTTAGGGAAGATTTTACCTCAAGCGACCTAGAGGATGGCCAAACC
CGAGTGGAGGATTTAAAGAAGCGTTTGGATAGAGTCGACGGTAACTATGC
CCTGGCCGCTGGGTTCAAAGCTAGAAGTAGT
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Coding sequence (CDS) from alignment at H-elongata_contig55562:1257..1637+

>mRNA_H-elongata_contig55562.12976.1 ID=mRNA_H-elongata_contig55562.12976.1|Name=mRNA_H-elongata_contig55562.12976.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at H-elongata_contig55562:1257..1637+ (Himanthalia elongata Himel1 dioecious)
ATGATTGATGATGAAGACAGCGAAATAGCGAAAGAGCAGGTGAAGAAAGG
TCTCGAAGAATTTACAATGGAAAATGGCAAATTAATAATCGAATACATTG
CCAAGGCAGAATCCGTAGCCATAAATGTAAGGTATTATGACATTGAAGTT
TCCGACCAAGAGGTTAGCCTTAGAACTCTAAATGGTCTTCCCTCTTCTTA
CGCCCCTGAGAAGCGAAATTTTTCCCTTAGGGAAGATTTTACCTCAAGCG
ACCTAGAGGATGGCCAAACCCGAGTGGAGGATTTAAAGAAGCGTTTGGAT
AGAGTCGACGGTAACTATGCCCTGGCCGCTGGGTTCAAAGCTAGAAGTAG
TATGATTGATGATGAAGACAGCGAAATAGCGAAAGAGCAGGTGAAGAAAG
GTCTCGAAGAATTTACAATGGAAAATGGCAAATTAATAATCGAATACATT
GCCAAGGCAGAATCCGTAGCCATAAATGTAAGGTATTATGACATTGAAGT
TTCCGACCAAGAGGTTAGCCTTAGAACTCTAAATGGTCTTCCCTCTTCTT
ACGCCCCTGAGAAGCGAAATTTTTCCCTTAGGGAAGATTTTACCTCAAGC
GACCTAGAGGATGGCCAAACCCGAGTGGAGGATTTAAAGAAGCGTTTGGA
TAGAGTCGACGGTAACTATGCCCTGGCCGCTGGGTTCAAAGCTAGAAGTA
GT
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