mRNA_H-elongata_contig55534.12971.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55534.12971.1
Unique NamemRNA_H-elongata_contig55534.12971.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig55534.12971.1 vs. uniprot
Match: D7FWD1_ECTSI (Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWD1_ECTSI)

HSP 1 Score: 404 bits (1039), Expect = 3.170e-127
Identity = 205/243 (84.36%), Postives = 214/243 (88.07%), Query Frame = 1
Query:    4 AQGLLQIFHPEATSLLKSHTISEPIVFWRWITPMAIALVTASAVFHWSMEGDAGPQKMFNRDAKLEDCQARATFLYDIVIGYNVSADGKWCLAIGIFQAAPGVIAGTMQLYSVDKRVSQILNGHTGTFAKIKIPGRVEEAQARDYRVLCFEEKKMDSPAKLYVMEVGRDKDAPGGVFRLSPQQIPTAADTPNDFPVAMQVSPKQDIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFVTTTQ 732
            AQG LQIF+ EA S LKSHTISEPIVFW+W     IALVTASAVFHWSM GD+GPQK+FNRDAKLE CQ         VIGYNVSADGKWCLA+GI+QA+PGVIAGTMQLYSVDKRVSQILNGHTGTFAKIK+PGR EEAQ     VLCFEEKK+DSPAKLYVMEVGRDKDAPGGVFRLSPQQIP AAD PNDFPVAMQVSPK DIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFVTTTQ
Sbjct:   69 AQGQLQIFNLEAKSRLKSHTISEPIVFWKWFDATTIALVTASAVFHWSMGGDSGPQKIFNRDAKLEGCQ---------VIGYNVSADGKWCLAVGIYQASPGVIAGTMQLYSVDKRVSQILNGHTGTFAKIKVPGRAEEAQ-----VLCFEEKKVDSPAKLYVMEVGRDKDAPGGVFRLSPQQIPNAADAPNDFPVAMQVSPKHDIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFVTTTQ 297          
BLAST of mRNA_H-elongata_contig55534.12971.1 vs. uniprot
Match: A0A835YZH1_9STRA (Clathrin heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZH1_9STRA)

HSP 1 Score: 333 bits (855), Expect = 9.590e-102
Identity = 167/241 (69.29%), Postives = 191/241 (79.25%), Query Frame = 1
Query:    4 AQGLLQIFHPEATSLLKSHTISEPIVFWRWITPMAIALVTASAVFHWSMEGDAGPQKMFNRDAKLEDCQARATFLYDIVIGYNVSADGKWCLAIGIFQAAPGVIAGTMQLYSVDKRVSQILNGHTGTFAKIKIPGRVEEAQARDYRVLCFEEKKMDSPAKLYVMEVGRDKDAPGGVFRLSPQQIPTAADTPNDFPVAMQVSPKQDIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFVTT 726
            A G LQIF+ +  + +K+HTIS+PI +WRW+ P  IALV+A+AV+HWSMEG   P K+F+RD KLE  Q         +IGY+VS D KWCL  GI QAAPGVIAGTMQLYSVDKRVSQILNGHTGTFA I  PGR   AQ     VLCFEEKKMDSPAKL++MEVGRDKDAPGGVFR++PQQIP   D PNDFPVAM VSP+ DIIFMITK GYLFMFD+H+GKALYRAKIS +T+FVTT
Sbjct:   81 AAGQLQIFNLDTKARVKAHTISDPIQYWRWLDPSTIALVSATAVYHWSMEGADPPAKVFDRDGKLEGSQ---------IIGYSVSMDRKWCLVTGISQAAPGVIAGTMQLYSVDKRVSQILNGHTGTFAVINRPGRDVPAQ-----VLCFEEKKMDSPAKLFIMEVGRDKDAPGGVFRVAPQQIPLPPDAPNDFPVAMNVSPRHDIIFMITKQGYLFMFDVHTGKALYRAKISNETVFVTT 307          
BLAST of mRNA_H-elongata_contig55534.12971.1 vs. uniprot
Match: A0A7S2V2C2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2C2_9STRA)

HSP 1 Score: 315 bits (806), Expect = 2.190e-96
Identity = 153/240 (63.75%), Postives = 182/240 (75.83%), Query Frame = 1
Query:    4 AQGLLQIFHPEATSLLKSHTISEPIVFWRWITPMAIALVTASAVFHWSMEGDAGPQKMFNRDAKLEDCQARATFLYDIVIGYNVSADGKWCLAIGIFQAAPGVIAGTMQLYSVDKRVSQILNGHTGTFAKIKIPGRVEEAQARDYRVLCFEEKKMDSPAKLYVMEVGRDKDAPGGVFRLSPQQIPTAADTPNDFPVAMQVSPKQDIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFVT 723
            AQG LQIF+ EA S +KSH +++ +VFWRW+    +A+VTA+AVFHWS+EGD+GP K+F+R A L             +I Y VSADGKWCL +GI Q   GVI GTMQLYSVD++VSQ+L GHTGTFA IK+PGR + AQ     VLCFEEKK+DSP KL++MEVGRDKDAPGGVFR  PQQIP   + PNDFPVAMQ   K D++FMI+KMGYLF+FDIHSGKALYRAKIS   IF T
Sbjct:   76 AQGTLQIFNLEARSKMKSHALTDAVVFWRWVDTKTVAVVTATAVFHWSIEGDSGPVKVFDRHASLSTGNQ--------IINYKVSADGKWCLLVGISQHETGVIVGTMQLYSVDRKVSQVLQGHTGTFATIKVPGRADPAQ-----VLCFEEKKLDSPPKLFIMEVGRDKDAPGGVFRPQPQQIPMPNEAPNDFPVAMQAGTKHDVLFMISKMGYLFLFDIHSGKALYRAKISNDPIFTT 302          
BLAST of mRNA_H-elongata_contig55534.12971.1 vs. uniprot
Match: A0A7S4DKD8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKD8_HETAK)

HSP 1 Score: 291 bits (745), Expect = 1.380e-94
Identity = 145/236 (61.44%), Postives = 176/236 (74.58%), Query Frame = 1
Query:   16 LQIFHPEATSLLKSHTISEPIVFWRWITPMAIALVTASAVFHWSMEGDAGPQKMFNRDAKLEDCQARATFLYDIVIGYNVSADGKWCLAIGIFQAAPGVIAGTMQLYSVDKRVSQILNGHTGTFAKIKIPGRVEEAQARDYRVLCFEEKKMDSPA-KLYVMEVGRDKDAPGGVFRLSPQQIPTAADTPNDFPVAMQVSPKQDIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFV 720
            +Q+F+ E+ S +K+H ++E  VFWRWI+P  I LVT +AV+HW +EGDA P K+F+R A L             +I Y VS DGKWCL IGI Q   G I GTMQLYS +K VSQ+L+GHTGTFA I++PGR + AQ     VLCF EKK DSP  KL+VMEVGRDK+APGGVFRL PQ+IP A + PNDFPVAMQ+  K D++FMITKMGYLF+FD+HSGKALYRAKIS +TIFV
Sbjct:   89 VQMFNLESRSKIKAHAMTETCVFWRWISPTVIGLVTPTAVYHWPLEGDATPAKVFDRHASLAAGSQ--------IINYKVSPDGKWCLLIGISQGEGGTIQGTMQLYSAEKGVSQVLSGHTGTFAMIRVPGREDPAQ-----VLCFTEKKADSPTYKLFVMEVGRDKNAPGGVFRLQPQEIPMAREAPNDFPVAMQLGSKHDVLFMITKMGYLFVFDVHSGKALYRAKISNETIFV 311          
BLAST of mRNA_H-elongata_contig55534.12971.1 vs. uniprot
Match: A0A024GSW4_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GSW4_9STRA)

HSP 1 Score: 258 bits (658), Expect = 3.280e-82
Identity = 129/241 (53.53%), Postives = 169/241 (70.12%), Query Frame = 1
Query:    4 AQGLLQIFHPEATSLLKSHTISEPIVFWRWITPMAIALVTASAVFHWSMEGDAGPQKMFNRDAKLEDCQARATFLYDIVIGYNVSADGKWCLAIGIFQAAPGVIAGTMQLYSVDKRVSQILNGHTGTFAKIKIPGRVEEAQARDYRVLCFEEKKMDSPAKLYVMEVGRDKDAPGGVFRLSPQQIPTAADTPNDFPVAMQVSPKQDIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFVTT 726
            ++  LQIF+ E  + +KS  ++E +VFWRWI+  +IALVTA+AVFHWS+EGD+ P K+F+R A L             +I Y  S D +W L +GI Q   G I G MQLYS++K+VSQ+L GH G+F K+K PGR E     D  +L F   K D P +L++MEVGRDKDAPGGVFRL PQ IP AAD  NDFPV++ V+  +DII+MITKMGYLF+FD H+GK +YRA++S+ T+FVTT
Sbjct:   53 SENQLQIFNMELRAKMKSFLMTEAVVFWRWISVNSIALVTATAVFHWSLEGDSPPVKIFDRHANLGAGTQ--------IISYEASQDNQWMLLVGISQGEGGRIVGNMQLYSMEKKVSQVLQGHAGSFTKMKPPGRAE-----DGHILVFAGIKGDGPQQLFIMEVGRDKDAPGGVFRLPPQNIPFAADAQNDFPVSIVVAMDEDIIYMITKMGYLFLFDAHTGKPVYRARVSQDTVFVTT 280          
BLAST of mRNA_H-elongata_contig55534.12971.1 vs. uniprot
Match: A0A7S1XLU7_9STRA (Clathrin heavy chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLU7_9STRA)

HSP 1 Score: 275 bits (704), Expect = 2.260e-81
Identity = 139/240 (57.92%), Postives = 173/240 (72.08%), Query Frame = 1
Query:    4 AQGLLQIFHPEATSLLKSHTISEPIVFWRWITPMAIALVTASAVFHWSMEGDAGPQKMFNRDAKLEDCQARATFLYDIVIGYNVSADGKWCLAIGIFQAAPGVIAGTMQLYSVDKRVSQILNGHTGTFAKIKIPGRVEEAQARDYRVLCFEEKKMDSPAKLYVMEVGRDKDAPGGVFRLSPQQIPTAADTPNDFPVAMQVSPKQDIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFVT 723
            +Q  LQIF+ E  + +K+H ++E + FWRW+    IA+VT +AV+HWS+EGDA P K+F+R A+L + +         VIGY VSADGKWCL +GI Q A G I GTMQLYS  KRVSQ+L GHTG F  IK+PGR + AQ     VLCFEEKK   PAKL+VMEVGRD   PG  FRL+PQ IP  A+   DFPV+M  S  QDII+MITKMG+L++FD+HSGKA+YRA+IS +TIFVT
Sbjct:   81 SQSQLQIFNLELRTKMKAHAMTEAVKFWRWVNNNTIAIVTPTAVYHWSLEGDASPTKVFDRHAQLAEGKQ--------VIGYEVSADGKWCLLVGISQGAGG-IEGTMQLYSAAKRVSQVLQGHTGCFHTIKVPGREDPAQ-----VLCFEEKKPQQPAKLFVMEVGRDPSLPGEAFRLTPQAIPVPAEAQADFPVSMVASKAQDIIYMITKMGFLYLFDVHSGKAIYRARISTETIFVT 306          
BLAST of mRNA_H-elongata_contig55534.12971.1 vs. uniprot
Match: F0XZJ1_AURAN (Clathrin heavy chain n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZJ1_AURAN)

HSP 1 Score: 275 bits (703), Expect = 3.070e-81
Identity = 139/236 (58.90%), Postives = 170/236 (72.03%), Query Frame = 1
Query:   16 LQIFHPEATSLLKSHTISEPIVFWRWITPMAIALVTASAVFHWSMEGDAGPQKMFNRDAKLEDCQARATFLYDIVIGYNVSADGKWCLAIGIFQAAPGVIAGTMQLYSVDKRVSQILNGHTGTFAKIKIPGRVEEAQARDYRVLCFEEKKMDSPAKLYVMEVGRDKDAPGGVFRLSPQQIPTAADTPNDFPVAMQVSPKQDIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFVT 723
            LQIF+ E  + +KSH ++E +VFWRW +P  IALVT +AVFHWS+EG + P K+ +R A L +           VI Y VS D KWCL +GI QAA GVI G MQLYSV+K+VSQ L GH G F  + +PGR + AQ     VL FEEKK D PAKL+VMEVGRDKDAPGGVFRL+P  IP  AD PNDFPV+M  SPK D+++M+TKMGYL++FD  SGKALYRA+I+  T+FVT
Sbjct:   59 LQIFNLELRAKMKSHNMTETVVFWRWTSPNNIALVTPTAVFHWSIEGTSEPVKVLDRHASLGEGTQ--------VINYQVSPDEKWCLLMGISQAAGGVIQGNMQLYSVEKKVSQTLQGHAGCFHSMAVPGRSDPAQ-----VLIFEEKKADQPAKLFVMEVGRDKDAPGGVFRLAPVAIPVPADAPNDFPVSMVPSPKHDVVYMVTKMGYLYLFDCLSGKALYRARITTDTVFVT 281          
BLAST of mRNA_H-elongata_contig55534.12971.1 vs. uniprot
Match: A0A7S2WTJ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTJ7_9STRA)

HSP 1 Score: 273 bits (697), Expect = 1.970e-80
Identity = 132/237 (55.70%), Postives = 172/237 (72.57%), Query Frame = 1
Query:   16 LQIFHPEATSLLKSHTISEPIVFWRWITPMAIALVTASAVFHWSMEGDAGPQKMFNRDAKLEDCQARATFLYDIVIGYNVSADGKWCLAIGIFQAAPGVIAGTMQLYSVDKRVSQILNGHTGTFAKIKIPGRVEEAQARDYRVLCFEEKKMDSPAKLYVMEVGRDKDAPGGVFRLSPQQIPTAADTPNDFPVAMQVSPKQDIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFVTT 726
            LQIF+ E  + +K+H ++E +VFWRW +P  IALVTA+AV+HWS+EG++ PQK+F+R+  L             +I Y +S DG+WCL +GI   A G I G MQLYSV+KRVSQ+LNGHTG F  I + GR + AQ     VLCFEEKK D P+KL+VMEVGRDKDAPGGVF+L P  IP   D  NDFP+AMQ S  Q +++M++KMGYL++FDI+S K +YRA+I++ TIFVTT
Sbjct:   90 LQIFNLELRARMKTHNMTEAVVFWRWTSPNNIALVTATAVYHWSIEGESPPQKVFDRNPNLSAAVQ--------IINYQISDDGQWCLLMGIKAGAAGAIDGHMQLYSVEKRVSQVLNGHTGVFCTIPVEGRADPAQ-----VLCFEEKKPDQPSKLFVMEVGRDKDAPGGVFKLVPVPIPVPPDAANDFPIAMQASSTQGVLYMVSKMGYLYLFDIYSAKCIYRARITQGTIFVTT 313          
BLAST of mRNA_H-elongata_contig55534.12971.1 vs. uniprot
Match: A0A2D4BEN2_PYTIN (Clathrin heavy chain n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BEN2_PYTIN)

HSP 1 Score: 273 bits (697), Expect = 2.020e-80
Identity = 134/240 (55.83%), Postives = 170/240 (70.83%), Query Frame = 1
Query:    4 AQGLLQIFHPEATSLLKSHTISEPIVFWRWITPMAIALVTASAVFHWSMEGDAGPQKMFNRDAKLEDCQARATFLYDIVIGYNVSADGKWCLAIGIFQAAPGVIAGTMQLYSVDKRVSQILNGHTGTFAKIKIPGRVEEAQARDYRVLCFEEKKMDSPAKLYVMEVGRDKDAPGGVFRLSPQQIPTAADTPNDFPVAMQVSPKQDIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFVT 723
            ++  LQIF+ E  + +KSH ++EP+VFWRWI+   IALVT SAV+HWS++GD+ P KMF+R A L             +I Y  S DGKW L +GI Q   G I G MQLYSV+K+VSQ+LNGH G FA +K PGR + AQ     VL F   K D+P +L++MEVGRDKDAPGGVFRL PQ IP AAD  NDFPV+M VSP   +++MITKMGYLF+FD H+GK +YRA++S+ T+FVT
Sbjct:  515 SENQLQIFNMELRAKMKSHLMTEPVVFWRWISVNTIALVTGSAVYHWSLDGDSAPVKMFDRHASLGAGTQ--------IISYEASPDGKWLLLVGIAQGDGGRIVGNMQLYSVEKKVSQVLNGHAGAFASMKPPGRTDXAQ-----VLVFAGTKGDTPQQLFIMEVGRDKDAPGGVFRLPPQAIPFAADAANDFPVSMLVSPSDXVVYMITKMGYLFLFDAHTGKPIYRARVSQDTVFVT 741          
BLAST of mRNA_H-elongata_contig55534.12971.1 vs. uniprot
Match: A0A2P4YLB1_9STRA (Clathrin heavy chain (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YLB1_9STRA)

HSP 1 Score: 263 bits (672), Expect = 6.620e-80
Identity = 134/241 (55.60%), Postives = 169/241 (70.12%), Query Frame = 1
Query:    4 AQGLLQIFHPEATSLLKSHTISEPIVFWRWITPMAIALVTASAVFHWSMEGDAGPQKMFNRDAKLEDCQARATFLYDIVIGYNVSADGKWCLAIGIFQAAPGVIAGTMQLYSVDKRVSQILNGHTGTFAKIKIPGRVEEAQARDYRVLCFEEKK-MDSPAKLYVMEVGRDKDAPGGVFRLSPQQIPTAADTPNDFPVAMQVSPKQDIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFVT 723
            A+  LQIF+ E  + +KSH ++E +VFWRWI+   IALVTASAVFHWS+EGD+ P K+F+R A L             +I Y  SAD +W L +GI Q   G IAG MQLYS++K+VSQ+L GH G FA++K PGR ++AQ     VL F   K    P +L++MEVGRD+DAPGGVFRL PQ IP AAD   DFPV+M VSP  DI++MITKMGYLF+FD HSGK +YRA++S+ T FVT
Sbjct:   84 AENQLQIFNMELRAKMKSHLMNEAVVFWRWISVNTIALVTASAVFHWSIEGDSPPTKIFDRHANLSSGTQ--------IISYEASADNQWMLLVGISQGEGGRIAGNMQLYSMEKKVSQVLQGHAGAFAQMKPPGRTDDAQ-----VLVFAGTKGAGEPMQLFIMEVGRDRDAPGGVFRLPPQPIPFAADAQADFPVSMLVSPSDDIVYMITKMGYLFLFDAHSGKPVYRARVSQDTTFVT 311          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55534.12971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWD1_ECTSI3.170e-12784.36Clathrin heavy chain n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A835YZH1_9STRA9.590e-10269.29Clathrin heavy chain n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2V2C2_9STRA2.190e-9663.75Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S4DKD8_HETAK1.380e-9461.44Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A024GSW4_9STRA3.280e-8253.53Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A7S1XLU7_9STRA2.260e-8157.92Clathrin heavy chain n=1 Tax=Phaeomonas parva TaxI... [more]
F0XZJ1_AURAN3.070e-8158.90Clathrin heavy chain n=1 Tax=Aureococcus anophagef... [more]
A0A7S2WTJ7_9STRA1.970e-8055.70Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A2D4BEN2_PYTIN2.020e-8055.83Clathrin heavy chain n=2 Tax=Pythium TaxID=4797 Re... [more]
A0A2P4YLB1_9STRA6.620e-8055.60Clathrin heavy chain (Fragment) n=1 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55534contigH-elongata_contig55534:364..3830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score406.4
Seed ortholog evalue9.6e-111
Seed eggNOG ortholog2880.D7FWD1
Preferred nameCLTC
KEGG koko:K04646
KEGG Pathwayko04142,ko04144,ko04721,ko04961,ko05016,ko05100,map04142,map04144,map04721,map04961,map05016,map05100
GOsGO:0000003,GO:0000041,GO:0000139,GO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000323,GO:0000578,GO:0000910,GO:0000912,GO:0000915,GO:0001505,GO:0001654,GO:0001745,GO:0002020,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003725,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005739,GO:0005764,GO:0005765,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005802,GO:0005819,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0005886,GO:0005905,GO:0005911,GO:0005938,GO:0006109,GO:0006403,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006836,GO:0006886,GO:0006887,GO:0006892,GO:0006895,GO:0006897,GO:0006898,GO:0006907,GO:0006950,GO:0006970,GO:0006996,GO:0007010,GO:0007017,GO:0007028,GO:0007030,GO:0007033,GO:0007034,GO:0007041,GO:0007049,GO:0007051,GO:0007052,GO:0007154,GO:0007163,GO:0007165,GO:0007166,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007315,GO:0007316,GO:0007346,GO:0007349,GO:0007350,GO:0007351,GO:0007389,GO:0007423,GO:0007424,GO:0007568,GO:0007591,GO:0007594,GO:0008022,GO:0008092,GO:0008103,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008298,GO:0008340,GO:0008358,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009267,GO:0009506,GO:0009507,GO:0009536,GO:0009605,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009798,GO:0009880,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009898,GO:0009948,GO:0009952,GO:0009966,GO:0009967,GO:0009987,GO:0009991,GO:0009994,GO:0010008,GO:0010118,GO:0010256,GO:0010259,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010623,GO:0010646,GO:0010647,GO:0010827,GO:0010828,GO:0012501,GO:0012505,GO:0012506,GO:0015031,GO:0015629,GO:0015630,GO:0015682,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016055,GO:0016079,GO:0016192,GO:0016197,GO:0016324,GO:0016325,GO:0016482,GO:0017156,GO:0019094,GO:0019222,GO:0019538,GO:0019882,GO:0019884,GO:0019886,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0022608,GO:0022609,GO:0022610,GO:0023051,GO:0023052,GO:0023056,GO:0023061,GO:0030001,GO:0030029,GO:0030036,GO:0030054,GO:0030100,GO:0030117,GO:0030118,GO:0030120,GO:0030125,GO:0030135,GO:0030136,GO:0030139,GO:0030141,GO:0030154,GO:0030163,GO:0030198,GO:0030276,GO:0030315,GO:0030424,GO:0030435,GO:0030479,GO:0030506,GO:0030587,GO:0030659,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0030951,GO:0030952,GO:0031032,GO:0031072,GO:0031090,GO:0031152,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031523,GO:0031623,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0031984,GO:0032051,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032588,GO:0032799,GO:0032801,GO:0032802,GO:0032879,GO:0032880,GO:0032881,GO:0032885,GO:0032886,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033218,GO:0033227,GO:0033267,GO:0033363,GO:0033554,GO:0033572,GO:0034381,GO:0034383,GO:0034613,GO:0034622,GO:0034762,GO:0034764,GO:0035002,GO:0035150,GO:0035151,GO:0035152,GO:0035159,GO:0035282,GO:0035567,GO:0036019,GO:0036020,GO:0040008,GO:0042044,GO:0042045,GO:0042147,GO:0042277,GO:0042303,GO:0042383,GO:0042594,GO:0042802,GO:0042886,GO:0042995,GO:0043005,GO:0043062,GO:0043112,GO:0043170,GO:0043195,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043255,GO:0043679,GO:0043933,GO:0043934,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044430,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044448,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044764,GO:0044837,GO:0045055,GO:0045056,GO:0045176,GO:0045177,GO:0045184,GO:0045202,GO:0045334,GO:0045451,GO:0045747,GO:0045807,GO:0045912,GO:0046324,GO:0046326,GO:0046666,GO:0046667,GO:0046903,GO:0046907,GO:0048002,GO:0048193,GO:0048232,GO:0048259,GO:0048260,GO:0048268,GO:0048285,GO:0048468,GO:0048469,GO:0048471,GO:0048475,GO:0048477,GO:0048489,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048592,GO:0048599,GO:0048609,GO:0048646,GO:0048731,GO:0048749,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050750,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051179,GO:0051225,GO:0051234,GO:0051236,GO:0051239,GO:0051301,GO:0051493,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051703,GO:0051704,GO:0051716,GO:0051726,GO:0055044,GO:0060071,GO:0060236,GO:0060255,GO:0060341,GO:0060541,GO:0060627,GO:0060810,GO:0060811,GO:0061024,GO:0061640,GO:0061645,GO:0062012,GO:0062014,GO:0065003,GO:0065007,GO:0065008,GO:0070325,GO:0070507,GO:0070633,GO:0070727,GO:0070925,GO:0071439,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072512,GO:0072583,GO:0072686,GO:0080090,GO:0090066,GO:0090175,GO:0090224,GO:0090307,GO:0090596,GO:0090702,GO:0097006,GO:0097159,GO:0097443,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0097718,GO:0098552,GO:0098562,GO:0098588,GO:0098590,GO:0098630,GO:0098657,GO:0098743,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098852,GO:0098916,GO:0099003,GO:0099080,GO:0099081,GO:0099120,GO:0099503,GO:0099504,GO:0099512,GO:0099513,GO:0099536,GO:0099537,GO:0099568,GO:0099643,GO:0120025,GO:0120038,GO:0140014,GO:0150034,GO:0198738,GO:1900125,GO:1900126,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902850,GO:1903047,GO:1903076,GO:1903077,GO:1903827,GO:1903828,GO:1904375,GO:1904376,GO:1905114,GO:1905330,GO:1905475,GO:1905476,GO:1990381,GO:1990498,GO:1990763,GO:2000026,GO:2000027,GO:2000369,GO:2000370
EggNOG free text desc.clathrin light chain binding
EggNOG OGsKOG0985@1,KOG0985@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons5
Model size732
Cds size732
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55534.12971.1prot_H-elongata_contig55534.12971.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55534 364..3830 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930905.0167406-CDS-H-elongata_contig55534:363..4951622930905.0167406-CDS-H-elongata_contig55534:363..495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55534 364..495 -
1691679618.9671528-CDS-H-elongata_contig55534:363..4951691679618.9671528-CDS-H-elongata_contig55534:363..495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55534 364..495 -
1622930905.0305934-CDS-H-elongata_contig55534:1389..15481622930905.0305934-CDS-H-elongata_contig55534:1389..1548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55534 1390..1548 -
1691679618.9804277-CDS-H-elongata_contig55534:1389..15481691679618.9804277-CDS-H-elongata_contig55534:1389..1548Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55534 1390..1548 -
1622930905.0457072-CDS-H-elongata_contig55534:1958..20611622930905.0457072-CDS-H-elongata_contig55534:1958..2061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55534 1959..2061 -
1691679618.9883316-CDS-H-elongata_contig55534:1958..20611691679618.9883316-CDS-H-elongata_contig55534:1958..2061Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55534 1959..2061 -
1622930905.0575883-CDS-H-elongata_contig55534:2718..28191622930905.0575883-CDS-H-elongata_contig55534:2718..2819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55534 2719..2819 -
1691679619.0004382-CDS-H-elongata_contig55534:2718..28191691679619.0004382-CDS-H-elongata_contig55534:2718..2819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55534 2719..2819 -
1622930905.0738366-CDS-H-elongata_contig55534:3593..38301622930905.0738366-CDS-H-elongata_contig55534:3593..3830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55534 3594..3830 -
1691679619.017721-CDS-H-elongata_contig55534:3593..38301691679619.017721-CDS-H-elongata_contig55534:3593..3830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55534 3594..3830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55534.12971.1

>prot_H-elongata_contig55534.12971.1 ID=prot_H-elongata_contig55534.12971.1|Name=mRNA_H-elongata_contig55534.12971.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=244bp
TAQGLLQIFHPEATSLLKSHTISEPIVFWRWITPMAIALVTASAVFHWSM
EGDAGPQKMFNRDAKLEDCQARATFLYDIVIGYNVSADGKWCLAIGIFQA
APGVIAGTMQLYSVDKRVSQILNGHTGTFAKIKIPGRVEEAQARDYRVLC
FEEKKMDSPAKLYVMEVGRDKDAPGGVFRLSPQQIPTAADTPNDFPVAMQ
VSPKQDIIFMITKMGYLFMFDIHSGKALYRAKISEQTIFVTTTQ
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mRNA from alignment at H-elongata_contig55534:364..3830-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55534.12971.1 ID=mRNA_H-elongata_contig55534.12971.1|Name=mRNA_H-elongata_contig55534.12971.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3467bp|location=Sequence derived from alignment at H-elongata_contig55534:364..3830- (Himanthalia elongata Himel1 dioecious)
ACAGCCCAAGGACTGCTGCAGATCTTCCACCCGGAGGCGACGAGCCTGCT GAAGAGCCACACCATCTCGGAGCCGATCGTGTTCTGGCGCTGGATTACCC CGATGGCGATCGCTTTGGTTACCGCCTCCGCGGTGTTCCATTGGTCCATG GAAGGCGACGCAGGCCCGCAGAAGATGTTCAACCGTGACGCTAAGCTCGA GGATTGCCAGGCACGCGCGACGTTTTTGTATGATATTGTATGAATGTTTT TATGGTCGCACTTTTAGCAGAAGGATCACTCGGATTTGGTTTCTTTTTGC TCGTGGTCAGCTGAACAGGAGAAATAATTTTCCCTGTTCCCCTAGTGAAA AATGTGTGCGGGGTGTGTGAATGTGTGTGTGGGAAAAGGCAGATATATAA ATGTATTTTTTTACTCTGGTTTTAAAGTGTAGCAGAAAAGACTGGTTTGT ACGAGATTTAGAGGTGTGAAAGGGAGGGAATACGTTTTGAAGAAAAACAT AAGGATTGGAGCTATCGCATACATCGTTTACTTGAAAAACGTAAGGATTG GAGAGTTAGAATGAGCCCAAAGTCTTTTATAAATAAAAACATAAACTCAT TCGAACCCTCCGAACATCCACAACTTCTTACCACTATGAGAGGTAGACAG ACCCCAGGGGACGAACAATTGTTAGGTTCGAGTGTTAAACATTACTGCTA ATGAGCACAAGATTGTCACGTCACATTTGATTGGTTTGTCTTTTTGGTTG TGTAAGCTGCAGGATGAAGATATATATTGAAATGTTTCGCCATAACGTAT AATTTGGCTTCTTCTATAATTTGATTATATTATGTGATGGGTGAAATTAT CTTTATTTGAATTTATTACAATTTTACGCCTTTTGGAACTAAATTTCAAG TTTTATACTCAATTAAGTGGGTAAAAAACAGATCGAGGTTCCATAGGGGT TATTTTTTTTTCCTGAAAAAGTAAATTAAATGTGCTATTTATATATATAA CTGTTTTTTAGGTGATCGGCTACAACGTGAGCGCTGATGGGAAATGGTGC CTCGCCATCGGCATCTTCCAGGCGGCTCCGGGAGTCATAGCGGGTACCAT GCAGCTGTACAGGTGTGTAACGTGTTGCCCATATCTGGTTCAAAACTAAT ACGTATATGGTATAAATCTTTTAACCCTTCGTGAACTGTGTTTCAAGTTT TATATTGATTTTAGTGTGTAAAAAGCAGATGGGAGTTCCATAGAGGTTGA AAAGGCGGTGTACCCCATGCCGGGGTTGTTCGAAGTCAGAGGGGGAACAA ACCCCACGAGACACCACACTGTCTGAAAATGTGTGTGTGTGTGTGTGTGT CTGTGTGTGTGTTTTTTTTACCATATTTCGCGAATATATTCTATGGTATA ATTTCAATGAAATTTTATTTTCGGAGGAAAAAAGGAAAGAAAAAGTAAGC AATGGTTTAATAACCCGAAGGGATGAGTATCTAGGTGTGAGGTCAATCGC TTTTTGTGCGCGGTTTCCCTATTGATATTAAATAGGAAGTTATTTTAATA AAAACCCTCACCCTCCCAAACAGCATTTTCTTTCTTTTACTTTTTTACTT TTTCTTATTTTTTCTTGTTTTTTTCTCCTTTATTTTTCCCTTTCTTGATT TTTCAACTCATTTGCGCTACCTCCGTATATTATCTTCTACGCTTTTCTGA TTTAATACTTATATATCTTTATATATTTACATCTATCTATATATATATAT GGTTGTATGCTTCTCGCAGTGTTGACAAGAGGGTGTCGCAGATCCTGAAC GGACACACGGGAACGTTCGCCAAGATCAAGATCCCCGGACGAGTGGAAGA GGCACAGGCGAGGGACTATCGCGTCAATCGGCACTCGAACGTTTTCGGTT GCGCCGCAAAACGCCCTTCGGAAGAAATCGGGATTTAGGTTTCACTTCGC TCGTGACAGCAGTGTCCCAAATCCCAACCCAAGCAGATGGGGTGTCAAGT CACACCAGAATTTTAATTTATGAAATCATGGATGTCAATAAATATATATA TATATATATTTGAAATCAGTTTTGGCGATAAAAAAAGTTAATTCAAACCT GTCACTTAATTTTTTTTCTCCTTTTTTCTTTTTCATCGGCTTTGTTTTCC GTTTATTTTTTAATAATAAATTTGTACAAAATATATATATTTTTATCGAT TTTGTTTTTATGAAATATTTTGTGAATCTTTTCTGTTAGCGATTAAAAAC AATCTATTTATTTATTTATTTATGTATATTAGGTGTTGTGCTTTGAGGAA AAAAAAATGGATTCTCCCGCGAAGCTGTACGTGATGGAGGTCGGGAGAGA CAAGGACGCCCCCGGAGGCGTTTTCCGGCTCTCCCCACAGCAGATCCCCA CCGCGGCGGACACACCGAATGACTTCCCCGTCGCGATGCAGGTAAAAAAG TAAAATAAAATAAACACATCTAAACGGTTTTTGGCTGTTCAGCATTATCA ACCCGGGGCGAACTTGGGACTCAAGCGGCGAAGAAGTGATAAGAATTCGT CCCTGGCGATGGTTTTCTCGCCCCCCCCCCCCCCCCCCCCCCCCGCTGGG TTTGTTAATAACGCCTTTTATAAANNNNNNNNNNAGATATCCTTATGAAG AGAAGCGTACTTTTATGCCTCCTCTTTATTTTGTATATATTTATCTGCAA GCGCCCAAATATTTTTTCTTGGTGGAAGAAATCATTTAGATTATGTATAC ATATTTTCCCCTGCTTCTCCACGCTGGAGATATTTTGCCGTTTTTTTTAA TGATTAATTGGAAATAGTCAACAAAAGCGAGCTGGAACAGCAATATATCC ATTCAGTCATGATCGCATCGTATAATCGTTTGGGATTCGAGACTATGATA GTACGAAGTAATATTTAAATGGATTGGACCTGTTTTTTCTAATGCTGCGG TATGGAAGTATAATGGCATAGCGTGGAATAGTGTAAGGAAAAAAAAGGAG TGTACCTGGTGTATATGTTTGGAGGGTTTGAAAGAGTTTAGATGTATTTA TAAAGACTTTATACTGGATATATACTTTACAGTGTATGATATATGTAAGG TTGTCAATGTACACATTCGAACGTGACGATAGTTGATCCCCTGGACTGCA ACCCTTTCACAGTGCTTAAGAAGGTGGTAATATATTTTGTAATAAATATA CATACTGCAGTCTTATCAATCTAACTTTGTTTTTAATTTTGTTGAAATAT TGGAAACTTTATTTACGATCTATAATAGTTTTATGTCATGGCCTTTTAAT AATCACCCCCCCCCCCCAAATAAATAAATAATCAGGTAAGCCCCAAGCAG GACATTATCTTTATGATCACCAAGATGGGGTACCTGTTCATGTTCGACAT ACACTCGGGCAAGGCACTCTACCGAGCCAAGATCAGCGAGCAGACAATCT TTGTCACCACTACCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig55534:364..3830-

>mRNA_H-elongata_contig55534.12971.1 ID=mRNA_H-elongata_contig55534.12971.1|Name=mRNA_H-elongata_contig55534.12971.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1464bp|location=Sequence derived from alignment at H-elongata_contig55534:364..3830- (Himanthalia elongata Himel1 dioecious)
ACAGCCCAAGGACTGCTGCAGATCTTCCACCCGGAGGCGACGAGCCTGCT
GAAGAGCCACACCATCTCGGAGCCGATCGTGTTCTGGCGCTGGATTACCC
CGATGGCGATCGCTTTGGTTACCGCCTCCGCGGTGTTCCATTGGTCCATG
GAAGGCGACGCAGGCCCGCAGAAGATGTTCAACCGTGACGCTAAGCTCGA
GGATTGCCAGGCACGCGCGACGTTTTTGTATGATATTACAGCCCAAGGAC
TGCTGCAGATCTTCCACCCGGAGGCGACGAGCCTGCTGAAGAGCCACACC
ATCTCGGAGCCGATCGTGTTCTGGCGCTGGATTACCCCGATGGCGATCGC
TTTGGTTACCGCCTCCGCGGTGTTCCATTGGTCCATGGAAGGCGACGCAG
GCCCGCAGAAGATGTTCAACCGTGACGCTAAGCTCGAGGATTGCCAGGCA
CGCGCGACGTTTTTGTATGATATTGTGATCGGCTACAACGTGAGCGCTGA
TGGGAAATGGTGCCTCGCCATCGGCATCTTCCAGGCGGCTCCGGGAGTCA
TAGCGGGTACCATGCAGCTGTACAGGTGATCGGCTACAACGTGAGCGCTG
ATGGGAAATGGTGCCTCGCCATCGGCATCTTCCAGGCGGCTCCGGGAGTC
ATAGCGGGTACCATGCAGCTGTACAGTGTTGACAAGAGGGTGTCGCAGAT
CCTGAACGGACACACGGGAACGTTCGCCAAGATCAAGATCCCCGGACGAG
TGGAAGAGGCACAGGCGAGGGACTATCGCTGTTGACAAGAGGGTGTCGCA
GATCCTGAACGGACACACGGGAACGTTCGCCAAGATCAAGATCCCCGGAC
GAGTGGAAGAGGCACAGGCGAGGGACTATCGCGTGTTGTGCTTTGAGGAA
AAAAAAATGGATTCTCCCGCGAAGCTGTACGTGATGGAGGTCGGGAGAGA
CAAGGACGCCCCCGGAGGCGTTTTCCGGCTCTCCCCACAGCAGATCCCCA
CCGCGGCGGACACACCGAATGACTTCCCCGTCGCGATGCAGGTGTTGTGC
TTTGAGGAAAAAAAAATGGATTCTCCCGCGAAGCTGTACGTGATGGAGGT
CGGGAGAGACAAGGACGCCCCCGGAGGCGTTTTCCGGCTCTCCCCACAGC
AGATCCCCACCGCGGCGGACACACCGAATGACTTCCCCGTCGCGATGCAG
GTAAGCCCCAAGCAGGACATTATCTTTATGATCACCAAGATGGGGTACCT
GTTCATGTTCGACATACACTCGGGCAAGGCACTCTACCGAGCCAAGATCA
GCGAGCAGACAATCTTTGTCACCACTACCCAGGTAAGCCCCAAGCAGGAC
ATTATCTTTATGATCACCAAGATGGGGTACCTGTTCATGTTCGACATACA
CTCGGGCAAGGCACTCTACCGAGCCAAGATCAGCGAGCAGACAATCTTTG
TCACCACTACCCAG
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