mRNA_H-elongata_contig55299.12944.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55299.12944.1
Unique NamemRNA_H-elongata_contig55299.12944.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55299.12944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55299contigH-elongata_contig55299:292..3101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2257
Cds size1623
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55299.12944.1prot_H-elongata_contig55299.12944.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55299 807..2982 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930901.6869032-UTR-H-elongata_contig55299:291..8061622930901.6869032-UTR-H-elongata_contig55299:291..806Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55299 292..806 -
1691679617.671576-UTR-H-elongata_contig55299:291..8061691679617.671576-UTR-H-elongata_contig55299:291..806Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55299 292..806 -
1622930901.7529929-UTR-H-elongata_contig55299:2982..31011622930901.7529929-UTR-H-elongata_contig55299:2982..3101Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55299 2983..3101 -
1691679617.7227178-UTR-H-elongata_contig55299:2982..31011691679617.7227178-UTR-H-elongata_contig55299:2982..3101Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55299 2983..3101 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930901.7086656-CDS-H-elongata_contig55299:806..20041622930901.7086656-CDS-H-elongata_contig55299:806..2004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55299 807..2004 -
1691679617.6824586-CDS-H-elongata_contig55299:806..20041691679617.6824586-CDS-H-elongata_contig55299:806..2004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55299 807..2004 -
1622930901.7264109-CDS-H-elongata_contig55299:2217..23201622930901.7264109-CDS-H-elongata_contig55299:2217..2320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55299 2218..2320 -
1691679617.6926055-CDS-H-elongata_contig55299:2217..23201691679617.6926055-CDS-H-elongata_contig55299:2217..2320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55299 2218..2320 -
1622930901.740885-CDS-H-elongata_contig55299:2660..29821622930901.740885-CDS-H-elongata_contig55299:2660..2982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55299 2661..2982 -
1691679617.7114024-CDS-H-elongata_contig55299:2660..29821691679617.7114024-CDS-H-elongata_contig55299:2660..2982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55299 2661..2982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55299.12944.1

>prot_H-elongata_contig55299.12944.1 ID=prot_H-elongata_contig55299.12944.1|Name=mRNA_H-elongata_contig55299.12944.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=541bp
MSNKEDFAEISFLDRNERTVSWVLNRLKKDTSRKASTFSMFQSVPIYYAA
LTVKHNKEMSAKDRNWKVVETYKNHASAAFLKWLQKEHDFQTPSWLTMEL
MGMTTFQDHEKKLYDPRKDALWKTYQRIGRDFRKTVTPWLNKWLVKAGDQ
GTLLSEQQRDDLMQDLTSFLWGTTQAGASKRMRRSDYEKRISDGEKLEIV
SDFLESGRNDRPGDESGVVDGGSKDGDEAEQKGGVVNGDIGENGASQSDG
GSQPPETDPETMVSVRMAMPDTWVHRDSLVVCIFSKISESPDEDLNLPPS
SGPQTRRRRSAGDSSNNENDDDSSSSSFGSDRQSGEAMNLLGKANEPHGR
GEAKKKAFWGPKKRKRAEEAKEKKKREETRERRLEELTLRVVKHLEKPPK
DEETRQATAAVEDIARAVTKSIELQELSVKQSNEAQAQEAQLKLHEARVN
ARNQEIKWQRDKIELLEKVGASDQVKRAELELVSLYEKPLDDFVIGGRSG
GQGNGGSGSLSTSYELSADADTGKALTGKAGDAVDAITIE*
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mRNA from alignment at H-elongata_contig55299:292..3101-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55299.12944.1 ID=mRNA_H-elongata_contig55299.12944.1|Name=mRNA_H-elongata_contig55299.12944.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2810bp|location=Sequence derived from alignment at H-elongata_contig55299:292..3101- (Himanthalia elongata Himel1 dioecious)
CAGGTTATGTAATGGGAGCTGAGCCTCTACTGAGACCATATCTGCTGAAT
CCCAGACCTGACCCATTGGTTAGAGATAATAATCTCAAGGGGTGATTTTC
AGGGTCAGGTGTGAGGATCATGAGTAATAAAGAGGATTTTGCCGAGATCT
CTTTCCTTGATAGAAACGAGCGCACTGTTTCGTGGGTACTAAATCGCCTT
AAGAAGGACACGAGCAGGAAGGCCAGTACCTTCTCCATGTTCCAAAGCGT
ACCAATTTACTACGCTGCGTTAACAGTAAAACATAACAAGGAGATGAGCG
CCAAGGACCGTAACTGGAAGGTTGTGGAAACGTATAAGAATCATGCATCT
GCGGCTTTCCTCAAATGGCTACAAAAGGAGCATGATTTCCAGACGCCTTC
TTGGCTGACCATGGAGCTCATGGGGATGACTACTTTTCAAGGTCAGCACC
GTCTTGTTTTCACGAAAACCGCCCTAAACGCATCATGCGTACGAACAGTC
GATGTGATCCACTTGCTTGCGAGAGGTGTAGGCGAAAAAGCTAGATGGGG
GAAGTACGTCGTGCCGTGCCCGGCAGGGTGTCTCGTGTTTGGATGACATA
ATACATTGCGTGTACGAGGACAGCAGAACAACAGTCGATTTTGAATTTGA
AATTAATAGTTTTTTTTGTCTTTACAGAGTTCGGAATTCGGTATAGCACG
CAATACAAGCTTACAGTATTTAAAAGTGTAGAAACATGGAACCAACGGGG
AAACGTTGTCCTGATGCATTTGCGTCCGCAGATCACGAGAAAAAGCTGTA
CGACCCAAGAAAAGACGCACTGTGGAAAACATACCAAAGGATCGGTCGAG
ACTTCCGGAAGACCGTGACTCCGTGGCTCAACAAGTGAGTTTGATGCGTA
CAATGCTCCAACATACTGTGTTTTGTTGACTTTTTATTATCAGAACCCAT
AGATGGTTCATCCCCTCCCCTACATCCCGTCTACCCTTAATTGCGATTTC
GTCGCTGGCGGCTCACTCTTTCCGCCTCTAAGATCGCGTACACAAGGCAC
AGAGCACGAACTGTGTTTCACATTGCCGTCGGTTTCCAACCCTGCAGGTG
GTTGGTAAAAGCCGGAGATCAGGGGACTCTCCTTTCCGAGCAACAACGCG
ACGATCTCATGCAGGACTTGACGAGCTTCCTCTGGGGCACGACCCAGGCC
GGCGCTTCTAAGCGAATGAGGAGGTCAGACTACGAAAAAAGAATCTCAGA
CGGGGAAAAACTGGAGATCGTCTCCGACTTCCTTGAAAGTGGAAGAAACG
ACAGGCCCGGTGACGAATCCGGGGTGGTGGACGGTGGAAGCAAAGACGGC
GACGAGGCTGAACAGAAAGGAGGGGTGGTGAATGGAGATATCGGGGAAAA
TGGTGCCAGCCAGAGCGATGGCGGTTCGCAGCCGCCAGAGACTGATCCCG
AGACGATGGTGAGCGTGCGTATGGCCATGCCAGACACATGGGTGCACAGG
GATAGCTTGGTGGTTTGCATTTTTAGCAAAATCAGCGAGAGCCCCGACGA
AGATCTGAACTTACCACCCAGCAGTGGCCCCCAAACCAGGAGACGCAGGT
CTGCCGGAGACAGCAGCAACAATGAAAACGACGACGATTCATCTTCATCA
TCTTTCGGGAGTGACAGGCAATCGGGAGAGGCCATGAACCTGTTAGGGAA
AGCAAACGAACCCCATGGCCGGGGCGAGGCTAAAAAGAAGGCCTTCTGGG
GGCCAAAGAAAAGAAAAAGAGCGGAGGAGGCGAAAGAGAAGAAAAAAAGA
GAGGAGACCAGGGAGCGTCGCCTCGAAGAATTAACGCTGAGGGTTGTAAA
GCACCTGGAGAAACCGCCAAAGGACGAAGAAACAAGGCAGGCAACGGCTG
CCGTGGAGGACATAGCGCGTGCGGTCACGAAGTCCATCGAGCTTCAGGAG
TTGTCGGTAAAGCAGTCAAACGAAGCTCAAGCGCAGGAAGCTCAGCTAAA
GTTGCATGAGGCACGCGTCAACGCACGCAATCAGGAAATCAAATGGCAGC
GAGATAAGATTGAGTTGCTGGAGAAAGTGGGGGCATCGGACCAAGTCAAG
CGGGCCGAACTTGAGCTCGTGTCTCTTTATGAGAAACCACTCGACGACTT
TGTTATCGGCGGTCGATCCGGAGGACAGGGCAACGGTGGCAGTGGTAGTT
TATCCACTAGCTATGAATTGTCGGCAGATGCTGACACCGGAAAAGCTCTT
ACCGGGAAGGCGGGGGACGCGGTGGACGCAATTACGATCGAGTAAAAGTC
GGGTGAAATTTAAGCTCGAGGAGCACAATGTGTGGGATATTCTAAAATTC
TAATTTGACTCGATGCGACTCTTCCTTCACGAGTTGTTATCTTTTTTCGC
CGTTCGCGATGTGCGTCTAGACCACACCTCCGGCGCGGGGGAGCGTAGCT
GAACACGGGCATAAATATTGTAGACAGTTTTCGGAATAGCATGAATGTGG
TGTATCTCACCCACGACACACGGTCGATGTCAAGGGGTGGACATTGAATG
CGCCGGAGTAGGTCAAATACCCAAGTATTCCGACTGCCCCTGTACCGATC
TTAGCTTGACGAGCGTGCAGCGGGGCACTCATATCGCCAAATATTTTCGC
CTTTTATGTATCTGTGTGGGATCGTCGAGAGTATTTTGTATTTTGTCCAC
GTTTACGCTTCACACACTGTGCGAAGTGGATAAGACAATGTTATTTTCTG
TATTTGCGTTGCAACCACGATCATAGAGATGATAGATTATCCAAGCGACA
AAGCGGTCTT
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Coding sequence (CDS) from alignment at H-elongata_contig55299:292..3101-

>mRNA_H-elongata_contig55299.12944.1 ID=mRNA_H-elongata_contig55299.12944.1|Name=mRNA_H-elongata_contig55299.12944.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3246bp|location=Sequence derived from alignment at H-elongata_contig55299:292..3101- (Himanthalia elongata Himel1 dioecious)
ATGAGTAATAAAGAGGATTTTGCCGAGATCTCTTTCCTTGATAGAAACGA
GCGCACTGTTTCGTGGGTACTAAATCGCCTTAAGAAGGACACGAGCAGGA
AGGCCAGTACCTTCTCCATGTTCCAAAGCGTACCAATTTACTACGCTGCG
TTAACAGTAAAACATAACAAGGAGATGAGCGCCAAGGACCGTAACTGGAA
GGTTGTGGAAACGTATAAGAATCATGCATCTGCGGCTTTCCTCAAATGGC
TACAAAAGGAGCATGATTTCCAGACGCCTTCTTGGCTGACCATGGAGCTC
ATGGGGATGACTACTTTTCAAGATGAGTAATAAAGAGGATTTTGCCGAGA
TCTCTTTCCTTGATAGAAACGAGCGCACTGTTTCGTGGGTACTAAATCGC
CTTAAGAAGGACACGAGCAGGAAGGCCAGTACCTTCTCCATGTTCCAAAG
CGTACCAATTTACTACGCTGCGTTAACAGTAAAACATAACAAGGAGATGA
GCGCCAAGGACCGTAACTGGAAGGTTGTGGAAACGTATAAGAATCATGCA
TCTGCGGCTTTCCTCAAATGGCTACAAAAGGAGCATGATTTCCAGACGCC
TTCTTGGCTGACCATGGAGCTCATGGGGATGACTACTTTTCAAGATCACG
AGAAAAAGCTGTACGACCCAAGAAAAGACGCACTGTGGAAAACATACCAA
AGGATCGGTCGAGACTTCCGGAAGACCGTGACTCCGTGGCTCAACAAATC
ACGAGAAAAAGCTGTACGACCCAAGAAAAGACGCACTGTGGAAAACATAC
CAAAGGATCGGTCGAGACTTCCGGAAGACCGTGACTCCGTGGCTCAACAA
GTGGTTGGTAAAAGCCGGAGATCAGGGGACTCTCCTTTCCGAGCAACAAC
GCGACGATCTCATGCAGGACTTGACGAGCTTCCTCTGGGGCACGACCCAG
GCCGGCGCTTCTAAGCGAATGAGGAGGTCAGACTACGAAAAAAGAATCTC
AGACGGGGAAAAACTGGAGATCGTCTCCGACTTCCTTGAAAGTGGAAGAA
ACGACAGGCCCGGTGACGAATCCGGGGTGGTGGACGGTGGAAGCAAAGAC
GGCGACGAGGCTGAACAGAAAGGAGGGGTGGTGAATGGAGATATCGGGGA
AAATGGTGCCAGCCAGAGCGATGGCGGTTCGCAGCCGCCAGAGACTGATC
CCGAGACGATGGTGAGCGTGCGTATGGCCATGCCAGACACATGGGTGCAC
AGGGATAGCTTGGTGGTTTGCATTTTTAGCAAAATCAGCGAGAGCCCCGA
CGAAGATCTGAACTTACCACCCAGCAGTGGCCCCCAAACCAGGAGACGCA
GGTCTGCCGGAGACAGCAGCAACAATGAAAACGACGACGATTCATCTTCA
TCATCTTTCGGGAGTGACAGGCAATCGGGAGAGGCCATGAACCTGTTAGG
GAAAGCAAACGAACCCCATGGCCGGGGCGAGGCTAAAAAGAAGGCCTTCT
GGGGGCCAAAGAAAAGAAAAAGAGCGGAGGAGGCGAAAGAGAAGAAAAAA
AGAGAGGAGACCAGGGAGCGTCGCCTCGAAGAATTAACGCTGAGGGTTGT
AAAGCACCTGGAGAAACCGCCAAAGGACGAAGAAACAAGGCAGGCAACGG
CTGCCGTGGAGGACATAGCGCGTGCGGTCACGAAGTCCATCGAGCTTCAG
GAGTTGTCGGTAAAGCAGTCAAACGAAGCTCAAGCGCAGGAAGCTCAGCT
AAAGTTGCATGAGGCACGCGTCAACGCACGCAATCAGGAAATCAAATGGC
AGCGAGATAAGATTGAGTTGCTGGAGAAAGTGGGGGCATCGGACCAAGTC
AAGCGGGCCGAACTTGAGCTCGTGTCTCTTTATGAGAAACCACTCGACGA
CTTTGTTATCGGCGGTCGATCCGGAGGACAGGGCAACGGTGGCAGTGGTA
GTTTATCCACTAGCTATGAATTGTCGGCAGATGCTGACACCGGAAAAGCT
CTTACCGGGAAGGCGGGGGACGCGGTGGACGCAATTACGATCGAGTAAGT
GGTTGGTAAAAGCCGGAGATCAGGGGACTCTCCTTTCCGAGCAACAACGC
GACGATCTCATGCAGGACTTGACGAGCTTCCTCTGGGGCACGACCCAGGC
CGGCGCTTCTAAGCGAATGAGGAGGTCAGACTACGAAAAAAGAATCTCAG
ACGGGGAAAAACTGGAGATCGTCTCCGACTTCCTTGAAAGTGGAAGAAAC
GACAGGCCCGGTGACGAATCCGGGGTGGTGGACGGTGGAAGCAAAGACGG
CGACGAGGCTGAACAGAAAGGAGGGGTGGTGAATGGAGATATCGGGGAAA
ATGGTGCCAGCCAGAGCGATGGCGGTTCGCAGCCGCCAGAGACTGATCCC
GAGACGATGGTGAGCGTGCGTATGGCCATGCCAGACACATGGGTGCACAG
GGATAGCTTGGTGGTTTGCATTTTTAGCAAAATCAGCGAGAGCCCCGACG
AAGATCTGAACTTACCACCCAGCAGTGGCCCCCAAACCAGGAGACGCAGG
TCTGCCGGAGACAGCAGCAACAATGAAAACGACGACGATTCATCTTCATC
ATCTTTCGGGAGTGACAGGCAATCGGGAGAGGCCATGAACCTGTTAGGGA
AAGCAAACGAACCCCATGGCCGGGGCGAGGCTAAAAAGAAGGCCTTCTGG
GGGCCAAAGAAAAGAAAAAGAGCGGAGGAGGCGAAAGAGAAGAAAAAAAG
AGAGGAGACCAGGGAGCGTCGCCTCGAAGAATTAACGCTGAGGGTTGTAA
AGCACCTGGAGAAACCGCCAAAGGACGAAGAAACAAGGCAGGCAACGGCT
GCCGTGGAGGACATAGCGCGTGCGGTCACGAAGTCCATCGAGCTTCAGGA
GTTGTCGGTAAAGCAGTCAAACGAAGCTCAAGCGCAGGAAGCTCAGCTAA
AGTTGCATGAGGCACGCGTCAACGCACGCAATCAGGAAATCAAATGGCAG
CGAGATAAGATTGAGTTGCTGGAGAAAGTGGGGGCATCGGACCAAGTCAA
GCGGGCCGAACTTGAGCTCGTGTCTCTTTATGAGAAACCACTCGACGACT
TTGTTATCGGCGGTCGATCCGGAGGACAGGGCAACGGTGGCAGTGGTAGT
TTATCCACTAGCTATGAATTGTCGGCAGATGCTGACACCGGAAAAGCTCT
TACCGGGAAGGCGGGGGACGCGGTGGACGCAATTACGATCGAGTAA
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