mRNA_H-elongata_contig55274.12940.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55274.12940.1
Unique NamemRNA_H-elongata_contig55274.12940.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55274.12940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55274contigH-elongata_contig55274:2757..3226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size433
Cds size408
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55274.12940.1prot_H-elongata_contig55274.12940.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55274 2782..3226 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930901.2973235-UTR-H-elongata_contig55274:2756..27811622930901.2973235-UTR-H-elongata_contig55274:2756..2781Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55274 2757..2781 +
1691679617.578545-UTR-H-elongata_contig55274:2756..27811691679617.578545-UTR-H-elongata_contig55274:2756..2781Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig55274 2757..2781 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930901.3204424-CDS-H-elongata_contig55274:2781..30181622930901.3204424-CDS-H-elongata_contig55274:2781..3018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55274 2782..3018 +
1691679617.588141-CDS-H-elongata_contig55274:2781..30181691679617.588141-CDS-H-elongata_contig55274:2781..3018Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55274 2782..3018 +
1622930901.3367577-CDS-H-elongata_contig55274:3055..32261622930901.3367577-CDS-H-elongata_contig55274:3055..3226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55274 3056..3226 +
1691679617.5994618-CDS-H-elongata_contig55274:3055..32261691679617.5994618-CDS-H-elongata_contig55274:3055..3226Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55274 3056..3226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55274.12940.1

>prot_H-elongata_contig55274.12940.1 ID=prot_H-elongata_contig55274.12940.1|Name=mRNA_H-elongata_contig55274.12940.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MYFTGFLNYSVYIAKGVVGRRSVYRVGKSLPSAAREQAWCSPFCYRPLPK
TDAVEGSSPPPRAWAQACSCVFCSYSSLRDARPTDSLESSLTSVAPFICA
RPPVCVSLSTMLTRSSSSFSFSRFNVLYTNNLSPTP
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mRNA from alignment at H-elongata_contig55274:2757..3226+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55274.12940.1 ID=mRNA_H-elongata_contig55274.12940.1|Name=mRNA_H-elongata_contig55274.12940.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=470bp|location=Sequence derived from alignment at H-elongata_contig55274:2757..3226+ (Himanthalia elongata Himel1 dioecious)
AAAAACAGGGAAAGGTAAGTAAGTAATGTATTTTACAGGTTTTCTAAACT
ACTCCGTGTACATCGCGAAAGGCGTGGTGGGGCGTAGAAGCGTGTACAGA
GTCGGAAAATCTCTTCCGTCCGCAGCTCGCGAGCAAGCGTGGTGTTCCCC
ATTTTGCTATCGGCCACTCCCAAAAACAGACGCAGTCGAAGGCTCTTCCC
CGCCCCCGCGCGCCTGGGCACAAGCTTGCTCTTGTGTTTTTTGTAGTTAT
AGTTCATTACGGAGGGTGTTTGTTTTCCTTCGTCTCGACGCCTCGAACCG
ATGCTCGCCCTACTGACTCGCTCGAGTCGTCTCTTACCTCAGTTGCGCCT
TTTATCTGCGCGCGCCCGCCCGTGTGTGTGTCTCTCTCTACCATGTTGAC
TCGATCATCATCTTCTTTTTCTTTTTCACGATTTAATGTACTGTATACTA
ATAATTTGTCTCCAACTCCC
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Coding sequence (CDS) from alignment at H-elongata_contig55274:2757..3226+

>mRNA_H-elongata_contig55274.12940.1 ID=mRNA_H-elongata_contig55274.12940.1|Name=mRNA_H-elongata_contig55274.12940.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig55274:2757..3226+ (Himanthalia elongata Himel1 dioecious)
ATGTATTTTACAGGTTTTCTAAACTACTCCGTGTACATCGCGAAAGGCGT
GGTGGGGCGTAGAAGCGTGTACAGAGTCGGAAAATCTCTTCCGTCCGCAG
CTCGCGAGCAAGCGTGGTGTTCCCCATTTTGCTATCGGCCACTCCCAAAA
ACAGACGCAGTCGAAGGCTCTTCCCCGCCCCCGCGCGCCTGGGCACAAGC
TTGCTCTTGTGTTTTTTGTAGTTATAGTTCATTACGGATGTATTTTACAG
GTTTTCTAAACTACTCCGTGTACATCGCGAAAGGCGTGGTGGGGCGTAGA
AGCGTGTACAGAGTCGGAAAATCTCTTCCGTCCGCAGCTCGCGAGCAAGC
GTGGTGTTCCCCATTTTGCTATCGGCCACTCCCAAAAACAGACGCAGTCG
AAGGCTCTTCCCCGCCCCCGCGCGCCTGGGCACAAGCTTGCTCTTGTGTT
TTTTGTAGTTATAGTTCATTACGGGATGCTCGCCCTACTGACTCGCTCGA
GTCGTCTCTTACCTCAGTTGCGCCTTTTATCTGCGCGCGCCCGCCCGTGT
GTGTGTCTCTCTCTACCATGTTGACTCGATCATCATCTTCTTTTTCTTTT
TCACGATTTAATGTACTGTATACTAATAATTTGTCTCCAACTCCCGATGC
TCGCCCTACTGACTCGCTCGAGTCGTCTCTTACCTCAGTTGCGCCTTTTA
TCTGCGCGCGCCCGCCCGTGTGTGTGTCTCTCTCTACCATGTTGACTCGA
TCATCATCTTCTTTTTCTTTTTCACGATTTAATGTACTGTATACTAATAA
TTTGTCTCCAACTCCC
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