mRNA_H-elongata_contig55202.12928.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig55202.12928.1
Unique NamemRNA_H-elongata_contig55202.12928.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig55202.12928.1 vs. uniprot
Match: D8LRI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRI4_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.140e-24
Identity = 95/303 (31.35%), Postives = 102/303 (33.66%), Query Frame = 1 
Query:    1 MDEESEEYVNMKYLRDDETPTPWPINDLARAPVSNLGFYPASEFGVLTKLIQQ---------------------------------------------------------------------------------------------------------------------------VRELMRTQVFIEAQQGRFVVALSLQEAESLRGCLHLAGRGNGL------------------DASWGY------------------------------------------LREAWFAEVRACRRRQQV 360
            MD++ EEYV MKY RDDE P  W I DL+    S LGFYPAS+FGVLTKLIQQ                                                                                                                           VRELMRTQ FIEAQQGRFVVALSLQEAE LRGCLHL+G+  GL                  DASWGY                                          LREAWF +VRACRRRQQV
Sbjct: 4066 MDDDPEEYVQMKYSRDDEVPKGWAIRDLSTPVASKLGFYPASDFGVLTKLIQQPKHIVFPKAMHVSRNHYKQSWSFKTFRRIKNVIVLMDWVPDVTALKPEPPPVGRQVTAEQDQLLKSAFSLLDFDGDGKLGENEFRTLLRALDVDVDNPTTGRASLVAIAKAAGVHSPFVTYQQVRELMRTQAFIEAQQGRFVVALSLQEAEHLRGCLHLSGKCTGLVRERPTTAALRLTDGTCLDASWGYNEPPPYQRKVAEACFRFMDSDARFADRDLDMLLRGVQDNEKYLREAWFVDVRACRRRQQV 4368
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BLAST of mRNA_H-elongata_contig55202.12928.1 vs. uniprot
Match: A0A835ZBK9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBK9_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 5.910e-11
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    7 EESEEYVNMKYLRDDETPTPWPINDLARAPVSNLGFYPASEFGVLTKLIQQVREL 171
            +E +++V  KY RDDETP PWPI+ LA     ++GFY ASEFGVLTKLIQQ + +
Sbjct:    4 QEPDDFVKQKYSRDDETPKPWPISKLADYKPDDMGFYAASEFGVLTKLIQQPKHM 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig55202.12928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRI4_ECTSI1.140e-2431.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZBK9_9STRA5.910e-1158.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig55202contigH-elongata_contig55202:2691..3855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue4.3e-22
Seed eggNOG ortholog2880.D8LRI4
Preferred nameENAH
KEGG koko:K03099,ko:K05746
KEGG Pathwayko01521,ko01522,ko04010,ko04012,ko04013,ko04014,ko04062,ko04068,ko04072,ko04150,ko04151,ko04320,ko04360,ko04510,ko04540,ko04630,ko04650,ko04660,ko04662,ko04664,ko04714,ko04722,ko04810,ko04910,ko04912,ko04915,ko04917,ko04926,ko05034,ko05160,ko05165,ko05200,ko05205,ko05206,ko05210,ko05211,ko05213,ko05214,ko05215,ko05220,ko05221,ko05223,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04010,map04012,map04013,map04014,map04062,map04068,map04072,map04150,map04151,map04320,map04360,map04510,map04540,map04630,map04650,map04660,map04662,map04664,map04714,map04722,map04810,map04910,map04912,map04915,map04917,map04926,map05034,map05160,map05165,map05200,map05205,map05206,map05210,map05211,map05213,map05214,map05215,map05220,map05221,map05223,map05224,map05225,map05226,map05231
EggNOG free text desc.positive regulation of caveolin-mediated endocytosis
EggNOG OGsKOG1029@1,KOG1029@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons3
Model size378
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig55202.12928.1prot_H-elongata_contig55202.12928.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig55202 2691..3855 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930899.9067829-CDS-H-elongata_contig55202:2690..28491622930899.9067829-CDS-H-elongata_contig55202:2690..2849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55202 2691..2849 +
1691679617.0733678-CDS-H-elongata_contig55202:2690..28491691679617.0733678-CDS-H-elongata_contig55202:2690..2849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55202 2691..2849 +
1622930899.9200072-CDS-H-elongata_contig55202:3140..32831622930899.9200072-CDS-H-elongata_contig55202:3140..3283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55202 3141..3283 +
1691679617.0893157-CDS-H-elongata_contig55202:3140..32831691679617.0893157-CDS-H-elongata_contig55202:3140..3283Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55202 3141..3283 +
1622930899.940331-CDS-H-elongata_contig55202:3779..38551622930899.940331-CDS-H-elongata_contig55202:3779..3855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55202 3780..3855 +
1691679617.1014473-CDS-H-elongata_contig55202:3779..38551691679617.1014473-CDS-H-elongata_contig55202:3779..3855Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig55202 3780..3855 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig55202.12928.1

>prot_H-elongata_contig55202.12928.1 ID=prot_H-elongata_contig55202.12928.1|Name=mRNA_H-elongata_contig55202.12928.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
MDEESEEYVNMKYLRDDETPTPWPINDLARAPVSNLGFYPASEFGVLTKL
IQQVRELMRTQVFIEAQQGRFVVALSLQEAESLRGCLHLAGRGNGLDASW
GYLREAWFAEVRACRRRQQVGRPRL*
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mRNA from alignment at H-elongata_contig55202:2691..3855+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig55202.12928.1 ID=mRNA_H-elongata_contig55202.12928.1|Name=mRNA_H-elongata_contig55202.12928.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1165bp|location=Sequence derived from alignment at H-elongata_contig55202:2691..3855+ (Himanthalia elongata Himel1 dioecious)
ATGGACGAGGAGTCGGAAGAGTATGTGAACATGAAGTACTTGAGGGACGA
CGAAACTCCGACGCCGTGGCCCATCAACGACCTCGCTCGAGCGCCGGTGT
CGAACCTCGGCTTCTACCCTGCCAGCGAGTTCGGCGTGCTGACGAAGCTC
ATCCAGCAGGTTGATGCACTTTTAATATACACACACACATATATATACAC
GTCAATTCCGCGACTCGGGCTAAAATGGCAGCGTTACCCACATCTACCGG
GTGGCCCCCTGTGATGATATCGCTGTGCTTGCCTACGAGAACGTGCGTTC
GTTCCTCGGGAAGCGCTATACCACGTCTTGCACTGGACTGAACTAGACTG
TTTCGTGCTGTACCGGTATGTGTCTAGATGTATGTGGCTGTGTTTGTATC
CCTCGTCGACCGTGCGCTGTCTACGTCCAATCGCGTGTGTGGCTCTCTAG
GTGCGCGAGCTGATGCGCACCCAGGTGTTCATCGAGGCGCAGCAGGGACG
GTTTGTGGTAGCGCTGTCCTTGCAGGAGGCGGAGAGCCTAAGGGGCTGCT
TGCACCTGGCGGGGCGGGGCAATGGGTTGGATGCGTCCTGGGGGTGAGGC
GCGGCACATCGCTCCGATGCACGATTATTAGTCAGGATCAAGCCTCAGGG
GTTTGGTAGAGTAATTCGGCATGTGCAGGATAACGACAATTAAGAGCTCT
CGCCCTCGCGATAGTCTGGCGCGTCAATGGTAGCGTCTCTGCCTCTGCGC
GGTGGCGGATTGCAATCTTGGATGGTGTTATGCTTTCTGTTAACAGTAGC
CGTCCATTTTTTCCAAGCATTGGATGTGGTGGGAGTGGTAAATTTTGTTT
ATCTTATTTTTTCTCTACTCCGAAGTTGTGTATCCATAGTGTAACGCGAT
CTTCTTTCGCCTGACAAAAAGGCGTGAGTACAGTCTCTGAGTGCATCGGC
AAGTGGCTCAAGAGCTGGCGAGCCCGCTCGTCCCACTCGGACACTTTTAA
AAACCGAGTTGTTTGAAGGTCGACACAGGCACCGTTGAGCCCTTTGCCGT
TTCTATATCTCTCGCCTGTACAATGTGGAACGCCTCAAGGTACCTTCGTG
AAGCATGGTTCGCGGAGGTGAGAGCCTGCCGCAGGAGGCAGCAGGTCGGT
CGGCCAAGGCTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig55202:2691..3855+

>mRNA_H-elongata_contig55202.12928.1 ID=mRNA_H-elongata_contig55202.12928.1|Name=mRNA_H-elongata_contig55202.12928.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig55202:2691..3855+ (Himanthalia elongata Himel1 dioecious)
ATGGACGAGGAGTCGGAAGAGTATGTGAACATGAAGTACTTGAGGGACGA
CGAAACTCCGACGCCGTGGCCCATCAACGACCTCGCTCGAGCGCCGGTGT
CGAACCTCGGCTTCTACCCTGCCAGCGAGTTCGGCGTGCTGACGAAGCTC
ATCCAGCAGATGGACGAGGAGTCGGAAGAGTATGTGAACATGAAGTACTT
GAGGGACGACGAAACTCCGACGCCGTGGCCCATCAACGACCTCGCTCGAG
CGCCGGTGTCGAACCTCGGCTTCTACCCTGCCAGCGAGTTCGGCGTGCTG
ACGAAGCTCATCCAGCAGGTGCGCGAGCTGATGCGCACCCAGGTGTTCAT
CGAGGCGCAGCAGGGACGGTTTGTGGTAGCGCTGTCCTTGCAGGAGGCGG
AGAGCCTAAGGGGCTGCTTGCACCTGGCGGGGCGGGGCAATGGGTTGGAT
GCGTCCTGGGGGTGCGCGAGCTGATGCGCACCCAGGTGTTCATCGAGGCG
CAGCAGGGACGGTTTGTGGTAGCGCTGTCCTTGCAGGAGGCGGAGAGCCT
AAGGGGCTGCTTGCACCTGGCGGGGCGGGGCAATGGGTTGGATGCGTCCT
GGGGGTACCTTCGTGAAGCATGGTTCGCGGAGGTGAGAGCCTGCCGCAGG
AGGCAGCAGGTCGGTCGGCCAAGGCTTTGAGTACCTTCGTGAAGCATGGT
TCGCGGAGGTGAGAGCCTGCCGCAGGAGGCAGCAGGTCGGTCGGCCAAGG
CTTTGA
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