prot_H-elongata_contig54534.12837.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig54534.12837.1
Unique Nameprot_H-elongata_contig54534.12837.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length100
Homology
[Close]
BLAST of mRNA_H-elongata_contig54534.12837.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.010e-6
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0 
Query:    2 WWKRWESSYPLLARAARVVFGAPA 25
            WWKRW SSYPLLARAARVVFGAPA
Sbjct:   40 WWKRWMSSYPLLARAARVVFGAPA 63
[Close]
BLAST of mRNA_H-elongata_contig54534.12837.1 vs. uniprot
Match: A0A6H5KGU9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU9_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 5.320e-6
Identity = 22/24 (91.67%), Postives = 22/24 (91.67%), Query Frame = 0 
Query:    2 WWKRWESSYPLLARAARVVFGAPA 25
            WWKRW SSYPLLARA RVVFGAPA
Sbjct:   40 WWKRWMSSYPLLARATRVVFGAPA 63
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54534.12837.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5L6_9PHAE1.010e-695.83Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KGU9_9PHAE5.320e-691.67Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54534contigH-elongata_contig54534:2096..2395 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54534.12837.1mRNA_H-elongata_contig54534.12837.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig54534 2096..2395 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig54534.12837.1 ID=prot_H-elongata_contig54534.12837.1|Name=mRNA_H-elongata_contig54534.12837.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MWWKRWESSYPLLARAARVVFGAPARFQRCWAHDDVIEKIHRCQVRGHEL
FSARQPGPHFRGHCRASSRRGRRCTKQDSRAVLQPAAVAARASRCIRPSG
back to top