mRNA_H-elongata_contig54500.12834.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig54500.12834.1 vs. uniprot
Match: A0A6H5JCM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM3_9PHAE) HSP 1 Score: 179 bits (453), Expect = 9.900e-50 Identity = 92/122 (75.41%), Postives = 108/122 (88.52%), Query Frame = 1
Query: 7 VMNTLEAGLEDIGVRSVRIDGATSQAERQPIVDRFQRDDTLSVILLAITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRSGT-AKTVLIQYMIGKGTMDDAMMPLIHRKQWTIKSTV 369
VM+ LE GL++IGV SVRIDG+T+Q +RQPIVDRFQ ++SVILL+ITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHR G AKTVLI+Y++G+GTMDD M+ IHRKQ T++STV
Sbjct: 398 VMDALERGLDEIGVCSVRIDGSTAQKKRQPIVDRFQGSSSVSVILLSITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRIGQKAKTVLIRYLVGRGTMDDGMISTIHRKQTTLRSTV 519
BLAST of mRNA_H-elongata_contig54500.12834.1 vs. uniprot
Match: D8LK86_ECTSI (Harp (Smarcal1)-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK86_ECTSI) HSP 1 Score: 176 bits (447), Expect = 7.300e-49 Identity = 91/122 (74.59%), Postives = 108/122 (88.52%), Query Frame = 1
Query: 7 VMNTLEAGLEDIGVRSVRIDGATSQAERQPIVDRFQRDDTLSVILLAITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRSGT-AKTVLIQYMIGKGTMDDAMMPLIHRKQWTIKSTV 369
VM+ LE GL++IGV SVRIDG+T+Q +RQPIVDRFQ ++SVILL+ITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHR G AKTVLI+Y++G+GTMDD ++ IHRKQ T++STV
Sbjct: 800 VMDALERGLDEIGVCSVRIDGSTAQKKRQPIVDRFQGSASVSVILLSITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRIGQKAKTVLIRYLVGRGTMDDGVISTIHRKQTTLRSTV 921
BLAST of mRNA_H-elongata_contig54500.12834.1 vs. uniprot
Match: A0A835Z711_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z711_9STRA) HSP 1 Score: 125 bits (315), Expect = 1.370e-34 Identity = 68/123 (55.28%), Postives = 87/123 (70.73%), Query Frame = 1
Query: 1 QAVMNTLEAGLEDIGVRSVRIDGATSQAERQPIVDRFQRDDTLSVILLAITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRSGTAKTVLIQYMIGKG-TMDDAMMPLIHRKQWTIKST 366
Q V++ +E ++D GV VRIDG T + +RQ +VDRFQ + + +ILL+ITAAGVGITLTA S A FAELYWTPG MAQAEDRIHR G LIQ+++ TMD ++ I KQ T++ST
Sbjct: 15 QEVLDGIERAIKDCGVEMVRIDGNTPKGKRQMLVDRFQTERRVRMILLSITAAGVGITLTAGSIAAFAELYWTPGVMAQAEDRIHRIGQKSQCLIQFLVSDTPTMDQHLLSSISLKQKTLQST 137
BLAST of mRNA_H-elongata_contig54500.12834.1 vs. uniprot
Match: A0A7S0TEQ7_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TEQ7_HEMAN) HSP 1 Score: 119 bits (299), Expect = 7.220e-32 Identity = 60/113 (53.10%), Postives = 80/113 (70.80%), Query Frame = 1
Query: 7 VMNTLEAGLEDIGVRSVRIDGATSQAERQPIVDRFQRDDTLSVILLAITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRSGTAKTVLIQYMIGKGTMDDAMMPLIHRK 345
V++ LEA + V +RIDG ++RQ +VD FQ+D+ + V +L +TAAGVG+TLTA+S VFAEL WTPG M QAEDR+HR G + V + Y+IGKGT+DD + P I RK
Sbjct: 42 VLDGLEAAVRKAKVGLIRIDGGVDASQRQGLVDSFQKDEGVRVAVLGLTAAGVGLTLTASSTVVFAELNWTPGVMVQAEDRVHRIGQRECVNVHYLIGKGTLDDVIWPGIVRK 154
BLAST of mRNA_H-elongata_contig54500.12834.1 vs. uniprot
Match: A0A0C2C8X4_9BILA (Helicase protein n=1 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2C8X4_9BILA) HSP 1 Score: 115 bits (289), Expect = 2.410e-30 Identity = 56/115 (48.70%), Postives = 80/115 (69.57%), Query Frame = 1
Query: 1 QAVMNTLEAGLEDIGVRSVRIDGATSQAERQPIVDRFQRDDTLSVILLAITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRSGTAKTVLIQYMIGKGTMDDAMMPLIHRK 345
Q V++T++ ++ ++SVRIDG TS +R + FQ D + V +L++TAAGVGITLTAAS VFAEL+W PG++ QAEDR HR G +V +QY+I + T DD + PL+ +K
Sbjct: 51 QIVLDTVQVEVQKRNLKSVRIDGQTSSKDRGNLCQAFQEDPDVEVAILSMTAAGVGITLTAASVVVFAELHWNPGTLLQAEDRAHRVGQKDSVFVQYLIARNTADDFIWPLVQKK 165
BLAST of mRNA_H-elongata_contig54500.12834.1 vs. uniprot
Match: A0A7S2APM7_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2APM7_9DINO) HSP 1 Score: 114 bits (284), Expect = 2.500e-30 Identity = 55/112 (49.11%), Postives = 75/112 (66.96%), Query Frame = 1
Query: 10 MNTLEAGLEDIGVRSVRIDGATSQAERQPIVDRFQRDDTLSVILLAITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRSGTAKTVLIQYMIGKGTMDDAMMPLIHRK 345
M+ +E L + G S+RIDG T A+R +V +FQ ++ + V +L+ITAAG G+TLTAA VF ELYW PG M QAEDR HR G +V +QY++ GT+DDA+ + RK
Sbjct: 1 MDAVERKLRERGTPSIRIDGKTHHAQRPGLVAKFQEEECVRVAVLSITAAGTGLTLTAAQTVVFGELYWVPGQMHQAEDRAHRIGQHDSVAVQYLVAAGTLDDALFKALERK 112
BLAST of mRNA_H-elongata_contig54500.12834.1 vs. uniprot
Match: A0A182ESM8_ONCOC (Helicase C-terminal domain-containing protein n=1 Tax=Onchocerca ochengi TaxID=42157 RepID=A0A182ESM8_ONCOC) HSP 1 Score: 118 bits (296), Expect = 3.970e-30 Identity = 58/121 (47.93%), Postives = 81/121 (66.94%), Query Frame = 1
Query: 1 QAVMNTLEAGLEDIGVRSVRIDGATSQAERQPIVDRFQRDDTLSVILLAITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRSGTAKTVLIQYMIGKGTMDDAMMPLIHRKQWTIKS 363
Q V++ + + G+RS+RIDGAT R FQ +D + V +L+ITAAG+G+TLTAAS +FAEL+W PG++ QAEDR HR G +V +QY+I KGT DD + PLI +K ++S
Sbjct: 136 QVVLDMISMDIAKKGLRSIRIDGATVSRSRDEQCRLFQENDDVMVAILSITAAGIGVTLTAASVVIFAELHWNPGTLKQAEDRAHRLGQKDSVFVQYLIAKGTADDVLWPLIQKKLDVLQS 256
BLAST of mRNA_H-elongata_contig54500.12834.1 vs. uniprot
Match: A0A1S3JIJ9_LINUN (DNA annealing helicase and endonuclease ZRANB3-like isoform X1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JIJ9_LINUN) HSP 1 Score: 122 bits (307), Expect = 5.430e-30 Identity = 61/123 (49.59%), Postives = 83/123 (67.48%), Query Frame = 1
Query: 1 QAVMNTLEAGLEDIGVRSVRIDGATSQAERQPIVDRFQRDDTLSVILLAITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRSGTAKTVLIQYMIGKGTMDDAMMPLIHRKQWTIKSTV 369
Q ++N L+ L D+ ++ +RIDG ER +VD FQ+D V LL+ITAAGVG+TLTAAS VFAELYWTPG++ Q EDR HR G V + Y++ KGTMD+ M +I+RK + +T+
Sbjct: 358 QDMLNGLQETLHDLDIKFIRIDGNVPPKERGMLVDTFQKDANTRVALLSITAAGVGLTLTAASLVVFAELYWTPGTLEQCEDRAHRIGQQNRVNVHYLVAKGTMDEWMWSMINRKTTVVTATL 480
BLAST of mRNA_H-elongata_contig54500.12834.1 vs. uniprot
Match: A0A0B2VFF8_TOXCA (Putative SMARCAL1-like protein n=2 Tax=Toxocara canis TaxID=6265 RepID=A0A0B2VFF8_TOXCA) HSP 1 Score: 119 bits (298), Expect = 7.280e-30 Identity = 57/115 (49.57%), Postives = 79/115 (68.70%), Query Frame = 1
Query: 1 QAVMNTLEAGLEDIGVRSVRIDGATSQAERQPIVDRFQRDDTLSVILLAITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRSGTAKTVLIQYMIGKGTMDDAMMPLIHRK 345
Q V++T+ + G+RS+RIDG T+ R+ FQ DD + V +L++TAAGVG+TLTAA+ VFAEL+W PG++ QAEDR HR G +V +QY++ GT DD + PLI RK
Sbjct: 203 QVVLDTISMHITKTGLRSIRIDGTTAPKSREEQCRLFQEDDDVVVAVLSMTAAGVGVTLTAATVVVFAELHWNPGTLKQAEDRAHRVGQTDSVFVQYLLANGTADDVLWPLIQRK 317
BLAST of mRNA_H-elongata_contig54500.12834.1 vs. uniprot
Match: A0A3P7YI71_9BILA (Helicase C-terminal domain-containing protein n=2 Tax=Brugia timori TaxID=42155 RepID=A0A3P7YI71_9BILA) HSP 1 Score: 113 bits (282), Expect = 1.500e-29 Identity = 55/101 (54.46%), Postives = 72/101 (71.29%), Query Frame = 1
Query: 43 GVRSVRIDGATSQAERQPIVDRFQRDDTLSVILLAITAAGVGITLTAASCAVFAELYWTPGSMAQAEDRIHRSGTAKTVLIQYMIGKGTMDDAMMPLIHRK 345
G+RS+RIDG T+ R FQ +D + V +L+ITAAG+G+TLTAAS VFAEL+W PG++ QAEDR HR G +V +QY+I KGT DD + PLI +K
Sbjct: 7 GLRSIRIDGTTASRLRDEQCRLFQENDDVMVAVLSITAAGIGVTLTAASVVVFAELHWNPGTLKQAEDRAHRLGQKDSVFVQYLIAKGTADDILWPLIQKK 107 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54500.12834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig54500.12834.1 >prot_H-elongata_contig54500.12834.1 ID=prot_H-elongata_contig54500.12834.1|Name=mRNA_H-elongata_contig54500.12834.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp MNTLEAGLEDIGVRSVRIDGATSQAERQPIVDRFQRDDTLSVILLAITAAback to top mRNA from alignment at H-elongata_contig54500:1536..2643+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig54500.12834.1 ID=mRNA_H-elongata_contig54500.12834.1|Name=mRNA_H-elongata_contig54500.12834.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1108bp|location=Sequence derived from alignment at H-elongata_contig54500:1536..2643+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig54500:1536..2643+ >mRNA_H-elongata_contig54500.12834.1 ID=mRNA_H-elongata_contig54500.12834.1|Name=mRNA_H-elongata_contig54500.12834.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig54500:1536..2643+ (Himanthalia elongata Himel1 dioecious)back to top |