mRNA_H-elongata_contig54448.12826.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig54448.12826.1
Unique NamemRNA_H-elongata_contig54448.12826.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig54448.12826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig54448contigH-elongata_contig54448:1723..2133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size411
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig54448.12826.1prot_H-elongata_contig54448.12826.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig54448 1791..2126 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930887.4017365-UTR-H-elongata_contig54448:1722..17901622930887.4017365-UTR-H-elongata_contig54448:1722..1790Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54448 1723..1790 +
1691679612.2021563-UTR-H-elongata_contig54448:1722..17901691679612.2021563-UTR-H-elongata_contig54448:1722..1790Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54448 1723..1790 +
1622930887.426433-UTR-H-elongata_contig54448:2126..21331622930887.426433-UTR-H-elongata_contig54448:2126..2133Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54448 2127..2133 +
1691679612.2209532-UTR-H-elongata_contig54448:2126..21331691679612.2209532-UTR-H-elongata_contig54448:2126..2133Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig54448 2127..2133 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930887.413521-CDS-H-elongata_contig54448:1790..21261622930887.413521-CDS-H-elongata_contig54448:1790..2126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54448 1791..2126 +
1691679612.2129006-CDS-H-elongata_contig54448:1790..21261691679612.2129006-CDS-H-elongata_contig54448:1790..2126Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig54448 1791..2126 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig54448.12826.1

>prot_H-elongata_contig54448.12826.1 ID=prot_H-elongata_contig54448.12826.1|Name=mRNA_H-elongata_contig54448.12826.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MMYHQSIKFPLQSATICNAPKRLPCNQNNTTVQTEAATSRYQESSYSIDS
TLLWRTPVPVHQPEPLCQSVLRFTIASSFSWLRICLKYFETKVERAQRAL
PPASLRTSLER*
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mRNA from alignment at H-elongata_contig54448:1723..2133+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig54448.12826.1 ID=mRNA_H-elongata_contig54448.12826.1|Name=mRNA_H-elongata_contig54448.12826.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=411bp|location=Sequence derived from alignment at H-elongata_contig54448:1723..2133+ (Himanthalia elongata Himel1 dioecious)
CACTACCATTCATCCCGTCATTTTTGTTGCCAAGCGTTTCAGCGAAATTA
TAATCGTGGATATTATACATGATGTACCATCAATCAATCAAATTCCCTCT
GCAATCCGCCACCATCTGCAATGCACCGAAGCGTTTGCCTTGTAACCAAA
ACAATACTACTGTACAAACGGAAGCAGCCACGTCCCGTTACCAGGAATCC
TCATACAGCATCGATTCCACCTTACTGTGGAGGACTCCCGTACCAGTACA
TCAACCAGAGCCTCTCTGCCAAAGCGTCCTCCGCTTTACCATAGCTTCCT
CGTTCTCATGGCTACGAATCTGTCTAAAATATTTTGAAACCAAAGTCGAG
AGAGCCCAACGTGCACTTCCTCCCGCTTCTCTACGGACCTCGCTCGAGCG
CTAGGCGGATA
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Coding sequence (CDS) from alignment at H-elongata_contig54448:1723..2133+

>mRNA_H-elongata_contig54448.12826.1 ID=mRNA_H-elongata_contig54448.12826.1|Name=mRNA_H-elongata_contig54448.12826.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig54448:1723..2133+ (Himanthalia elongata Himel1 dioecious)
ATGATGTACCATCAATCAATCAAATTCCCTCTGCAATCCGCCACCATCTG
CAATGCACCGAAGCGTTTGCCTTGTAACCAAAACAATACTACTGTACAAA
CGGAAGCAGCCACGTCCCGTTACCAGGAATCCTCATACAGCATCGATTCC
ACCTTACTGTGGAGGACTCCCGTACCAGTACATCAACCAGAGCCTCTCTG
CCAAAGCGTCCTCCGCTTTACCATAGCTTCCTCGTTCTCATGGCTACGAA
TCTGTCTAAAATATTTTGAAACCAAAGTCGAGAGAGCCCAACGTGCACTT
CCTCCCGCTTCTCTACGGACCTCGCTCGAGCGCTAGATGATGTACCATCA
ATCAATCAAATTCCCTCTGCAATCCGCCACCATCTGCAATGCACCGAAGC
GTTTGCCTTGTAACCAAAACAATACTACTGTACAAACGGAAGCAGCCACG
TCCCGTTACCAGGAATCCTCATACAGCATCGATTCCACCTTACTGTGGAG
GACTCCCGTACCAGTACATCAACCAGAGCCTCTCTGCCAAAGCGTCCTCC
GCTTTACCATAGCTTCCTCGTTCTCATGGCTACGAATCTGTCTAAAATAT
TTTGAAACCAAAGTCGAGAGAGCCCAACGTGCACTTCCTCCCGCTTCTCT
ACGGACCTCGCTCGAGCGCTAG
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